mRNA_L-digitata_M_contig1002.3.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig1002.3.1
Unique NamemRNA_L-digitata_M_contig1002.3.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig1002.3.1 vs. uniprot
Match: D8LP55_ECTSI (EsV-1-16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP55_ECTSI)

HSP 1 Score: 201 bits (512), Expect = 5.850e-63
Identity = 96/152 (63.16%), Postives = 114/152 (75.00%), Query Frame = 1 
Query:    1 MRCAFLPIWDGKGDKHVAYIGPSQNLKPETRRHLSPIDKQQILQRQCSRCNCCGERIRLYPSANCDADHIVGVCRGGKTTLENIQLLCVQDHRAKSAREAQGASRMIDVGLEPGDTSVYIFASGTIQFPVDKRTPLEAIQNGRGLSLLTFKE 456
            M+  FLP++ G G K VAYIGPS NL+P  R+HL+   K  IL+RQ SRCN CG+RIR+YP A+CDADHI+GVCRGGKT  EN+ LLC+  HR K+  EA G  R +DV LEPGDTSVYIF  G + +PVDKRTPLEAI NG  LSLLTF +
Sbjct:    1 MKHLFLPVFSGTGSKPVAYIGPSLNLRPVARKHLTRPQKWAILERQRSRCNSCGDRIRIYPYADCDADHIIGVCRGGKTVPENMNLLCLPCHRRKTCLEAGGLPRTVDVALEPGDTSVYIFTEGVLAYPVDKRTPLEAITNGCALSLLTFNK 152
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BLAST of mRNA_L-digitata_M_contig1002.3.1 vs. uniprot
Match: D7G322_ECTSI (EsV-1-16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G322_ECTSI)

HSP 1 Score: 196 bits (498), Expect = 6.240e-61
Identity = 89/159 (55.97%), Postives = 115/159 (72.33%), Query Frame = 1 
Query:    1 MRCAFLPIWDGKGDKHVAYIGPSQNLKPETRRHLSPIDKQQILQRQCSRCNCCGERIRLYPSANCDADHIVGVCRGGKTTLENIQLLCVQDHRAKSAREAQGASRMIDVGLEPGDTSVYIFASGTIQFPVDKRTPLEAIQNGRGLSLLTFKESRQDVYR 477
            MRC FLP++ G G   VAY+GPS NL+P  R+HL+   KQ +LQ Q SRCN CG+ I L P ANCDADH++GVCRGG+T  EN Q+LCV+ HR K+  EA G+ R ++V LEPGD++VYIF  GT+  P DKRTPLEAI +G  LS++T+K   + V +
Sbjct:    1 MRCTFLPVFGGVGQAPVAYVGPSHNLRPRARKHLTRSQKQAVLQTQRSRCNSCGDLIHLQPYANCDADHVIGVCRGGETVEENTQMLCVRCHRQKTCLEAGGSPRTVEVALEPGDSNVYIFTGGTMDLPCDKRTPLEAIGDGCALSIITYKRVNRKVVK 159
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BLAST of mRNA_L-digitata_M_contig1002.3.1 vs. uniprot
Match: Q8QNP5_ESV1K (EsV-1-16 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNP5_ESV1K)

HSP 1 Score: 187 bits (476), Expect = 1.700e-57
Identity = 91/151 (60.26%), Postives = 109/151 (72.19%), Query Frame = 1 
Query:    1 MRCAFLPIWDGKGDKHVAYIGPSQNLKPETRRHLSPIDKQQILQRQCSRCNCCGERIRLYPSANCDADHIVGVCRGGKTTLENIQLLCVQDHRAKSAREAQGASRMIDVGLEPGDTSVYIFASGTIQFPVDKRTPLEAIQNGRGLSLLTFK 453
            M   FLP++ G   K VAYIGPS NL+P  R+HL+   K  IL+RQ SRCN  G+RI +YP ANCDADHI+ VCRGGKT  EN+ LLC+  HR K+  EA G  R ++V LEPGDTSVYIF  G + FPVDKRTPLEAI +G  LSLL++K
Sbjct:    1 MTHLFLPVFSGTASKPVAYIGPSHNLRPVARKHLTRPQKWAILERQRSRCNSYGDRIHIYPYANCDADHIISVCRGGKTLPENMNLLCLPCHRRKTCLEAGGLPRTVNVALEPGDTSVYIFTEGVLAFPVDKRTPLEAIGDGCALSLLSYK 151
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig1002.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LP55_ECTSI5.850e-6363.16EsV-1-16 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
D7G322_ECTSI6.240e-6155.97EsV-1-16 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
Q8QNP5_ESV1K1.700e-5760.26EsV-1-16 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig1002contigL-digitata_M_contig1002:3233..3787 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1121351.AUAP01000001_gene574
PFAMsHNH
Model size555
Max annot lvl206351|Neisseriales
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.31e-06
EggNOG OGsCOG1403@1|root,COG1403@2|Bacteria,1PUQ3@1224|Proteobacteria,2VU38@28216|Betaproteobacteria,2KRNU@206351|Neisseriales
Ec32 ortholog descriptionEsV-1-16 HNH nuclease
Ec32 orthologEc-06_006570.1
DescriptionHNH endonuclease
Cds size555
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406604.6670904-CDS-L-digitata_M_contig1002:3232..37871682406604.6670904-CDS-L-digitata_M_contig1002:3232..3787Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig1002 3233..3787 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig1002.3.1prot_L-digitata_M_contig1002.3.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig1002 3233..3787 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig1002.3.1

>prot_L-digitata_M_contig1002.3.1 ID=prot_L-digitata_M_contig1002.3.1|Name=mRNA_L-digitata_M_contig1002.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=185bp
MRCAFLPIWDGKGDKHVAYIGPSQNLKPETRRHLSPIDKQQILQRQCSRC
NCCGERIRLYPSANCDADHIVGVCRGGKTTLENIQLLCVQDHRAKSAREA
QGASRMIDVGLEPGDTSVYIFASGTIQFPVDKRTPLEAIQNGRGLSLLTF
KESRQDVYRGRLRRDGFWENVGKVCLQAANGVLV*
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mRNA from alignment at L-digitata_M_contig1002:3233..3787-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig1002.3.1 ID=mRNA_L-digitata_M_contig1002.3.1|Name=mRNA_L-digitata_M_contig1002.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=555bp|location=Sequence derived from alignment at L-digitata_M_contig1002:3233..3787- (Laminaria digitata LdigPH10_18mv male)
ATGAGATGTGCGTTTCTCCCCATATGGGACGGGAAGGGTGATAAACACGT
GGCCTACATAGGCCCGTCGCAAAACCTCAAGCCTGAGACGCGCAGGCACC
TGTCGCCGATTGACAAGCAGCAAATCTTGCAACGCCAATGTTCGCGCTGC
AATTGTTGCGGCGAGCGGATACGCCTGTACCCCTCCGCCAACTGCGACGC
TGACCACATCGTAGGGGTTTGCAGAGGTGGCAAAACGACGCTCGAGAATA
TACAGTTGCTCTGCGTGCAAGATCACAGGGCAAAGTCTGCACGCGAGGCA
CAGGGTGCTTCACGAATGATTGATGTCGGGTTGGAACCAGGCGACACCAG
CGTGTACATATTCGCCTCAGGAACAATACAGTTTCCGGTGGACAAAAGGA
CGCCGCTTGAGGCAATTCAGAACGGGCGCGGGTTGTCGCTTCTCACGTTC
AAAGAGAGTAGACAGGACGTTTATAGAGGACGCCTACGCCGAGATGGATT
TTGGGAAAATGTTGGAAAAGTTTGTTTACAGGCTGCGAATGGCGTGCTAG
TTTAA
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Coding sequence (CDS) from alignment at L-digitata_M_contig1002:3233..3787-

>mRNA_L-digitata_M_contig1002.3.1 ID=mRNA_L-digitata_M_contig1002.3.1|Name=mRNA_L-digitata_M_contig1002.3.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=555bp|location=Sequence derived from alignment at L-digitata_M_contig1002:3233..3787- (Laminaria digitata LdigPH10_18mv male)
ATGAGATGTGCGTTTCTCCCCATATGGGACGGGAAGGGTGATAAACACGT
GGCCTACATAGGCCCGTCGCAAAACCTCAAGCCTGAGACGCGCAGGCACC
TGTCGCCGATTGACAAGCAGCAAATCTTGCAACGCCAATGTTCGCGCTGC
AATTGTTGCGGCGAGCGGATACGCCTGTACCCCTCCGCCAACTGCGACGC
TGACCACATCGTAGGGGTTTGCAGAGGTGGCAAAACGACGCTCGAGAATA
TACAGTTGCTCTGCGTGCAAGATCACAGGGCAAAGTCTGCACGCGAGGCA
CAGGGTGCTTCACGAATGATTGATGTCGGGTTGGAACCAGGCGACACCAG
CGTGTACATATTCGCCTCAGGAACAATACAGTTTCCGGTGGACAAAAGGA
CGCCGCTTGAGGCAATTCAGAACGGGCGCGGGTTGTCGCTTCTCACGTTC
AAAGAGAGTAGACAGGACGTTTATAGAGGACGCCTACGCCGAGATGGATT
TTGGGAAAATGTTGGAAAAGTTTGTTTACAGGCTGCGAATGGCGTGCTAG
TTTAA
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