prot_L-digitata_M_contig10013.1.1 (polypeptide) Laminaria digitata LdigPH10_18mv male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-digitata_M_contig10013.1.1
Unique Nameprot_L-digitata_M_contig10013.1.1
Typepolypeptide
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Sequence length116
Homology
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BLAST of mRNA_L-digitata_M_contig10013.1.1 vs. uniprot
Match: D7FWV2_ECTSI (VWFA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWV2_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 1.410e-12
Identity = 38/66 (57.58%), Postives = 50/66 (75.76%), Query Frame = 0 
Query:   51 LARKLTCAVLSVVFMGGFLVILIQVSLTLTAVPDWSADSKQAMIDLEQENILKLASDKAGYVDEIF 116
            LARKLTC+ +S+V     L++ IQV+LTLTAV DW AD+++AMI LEQ N+LKL + KA +V E F
Sbjct:   23 LARKLTCSEISIVAAATVLILAIQVALTLTAVDDWGADTREAMIQLEQANLLKLVAAKAEFVSEHF 88
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BLAST of mRNA_L-digitata_M_contig10013.1.1 vs. uniprot
Match: A0A6H5KL16_9PHAE (VWFA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KL16_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 3.530e-7
Identity = 27/51 (52.94%), Postives = 39/51 (76.47%), Query Frame = 0 
Query:   66 GGFLVILIQVSLTLTAVPDWSADSKQAMIDLEQENILKLASDKAGYVDEIF 116
            G  +++LIQV LTLTAV DW  D+++AM+++E+ N+LKLA  KA +V E F
Sbjct:   34 GTVIILLIQVVLTLTAVDDWGGDTREAMVEVEEANLLKLAEAKAEFVSEQF 84
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10013.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FWV2_ECTSI1.410e-1257.58VWFA domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KL16_9PHAE3.530e-752.94VWFA domain-containing protein n=2 Tax=Ectocarpus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..39
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 18..40

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig10013contigL-digitata_M_contig10013:1214..1561 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig10013.1.1mRNA_L-digitata_M_contig10013.1.1Laminaria digitata LdigPH10_18mv malemRNAL-digitata_M_contig10013 1214..1652 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-digitata_M_contig10013.1.1 ID=prot_L-digitata_M_contig10013.1.1|Name=mRNA_L-digitata_M_contig10013.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=116bp
MPSSSSTSAGAAVRGSASAATGWGSRPSRAGSTASSAYDEEEANLRPPQV
LARKLTCAVLSVVFMGGFLVILIQVSLTLTAVPDWSADSKQAMIDLEQEN
ILKLASDKAGYVDEIF
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