mRNA_L-digitata_M_contig10013.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig10013.1.1
Unique NamemRNA_L-digitata_M_contig10013.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig10013.1.1 vs. uniprot
Match: D7FWV2_ECTSI (VWFA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWV2_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 3.910e-12
Identity = 38/66 (57.58%), Postives = 50/66 (75.76%), Query Frame = 2 
Query:  242 LARKLTCAVLSVVFMGGFLVILIQVSLTLTAVPDWSADSKQAMIDLEQENILKLASDKAGYVDEIF 439
            LARKLTC+ +S+V     L++ IQV+LTLTAV DW AD+++AMI LEQ N+LKL + KA +V E F
Sbjct:   23 LARKLTCSEISIVAAATVLILAIQVALTLTAVDDWGADTREAMIQLEQANLLKLVAAKAEFVSEHF 88
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BLAST of mRNA_L-digitata_M_contig10013.1.1 vs. uniprot
Match: A0A6H5KL16_9PHAE (VWFA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KL16_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 9.030e-7
Identity = 27/51 (52.94%), Postives = 39/51 (76.47%), Query Frame = 2 
Query:  287 GGFLVILIQVSLTLTAVPDWSADSKQAMIDLEQENILKLASDKAGYVDEIF 439
            G  +++LIQV LTLTAV DW  D+++AM+++E+ N+LKLA  KA +V E F
Sbjct:   34 GTVIILLIQVVLTLTAVDDWGGDTREAMVEVEEANLLKLAEAKAEFVSEQF 84
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig10013.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FWV2_ECTSI3.910e-1257.58VWFA domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KL16_9PHAE9.030e-752.94VWFA domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig10013contigL-digitata_M_contig10013:1214..1652 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FWV2
PFAMsAlpha_kinase,VWA_2,dCache_1
Model size440
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal anchor
Exons1
Evalue2.31e-13
EggNOG OGs2DNG0@1|root,2S673@2759|Eukaryota
Descriptionvon Willebrand factor (vWF) type A domain
Cds size348
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406603.7813191-CDS-L-digitata_M_contig10013:1213..15611682406603.7813191-CDS-L-digitata_M_contig10013:1213..1561Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig10013 1214..1561 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682406603.7937381-UTR-L-digitata_M_contig10013:1561..16521682406603.7937381-UTR-L-digitata_M_contig10013:1561..1652Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig10013 1562..1652 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig10013.1.1prot_L-digitata_M_contig10013.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig10013 1214..1561 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig10013.1.1

>prot_L-digitata_M_contig10013.1.1 ID=prot_L-digitata_M_contig10013.1.1|Name=mRNA_L-digitata_M_contig10013.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=116bp
MPSSSSTSAGAAVRGSASAATGWGSRPSRAGSTASSAYDEEEANLRPPQV
LARKLTCAVLSVVFMGGFLVILIQVSLTLTAVPDWSADSKQAMIDLEQEN
ILKLASDKAGYVDEIF
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mRNA from alignment at L-digitata_M_contig10013:1214..1652-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig10013.1.1 ID=mRNA_L-digitata_M_contig10013.1.1|Name=mRNA_L-digitata_M_contig10013.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=439bp|location=Sequence derived from alignment at L-digitata_M_contig10013:1214..1652- (Laminaria digitata LdigPH10_18mv male)
GCTGAGTCCGGCGGCCGAGAGCGTGTGAGCTTGAGCTACTGCTACTTGAG
CTACTACTCTACCTACCTTGTTCACCCCCCATCACATCTTTATGCCATCG
TCATCATCAACTAGCGCTGGTGCTGCTGTACGTGGGTCGGCCTCCGCCGC
GACGGGGTGGGGCTCGCGGCCATCAAGAGCCGGTTCTACAGCATCCTCAG
CATACGACGAAGAAGAAGCTAACCTTCGTCCGCCACAGGTGCTCGCTCGG
AAGCTCACATGCGCAGTCCTCAGCGTGGTGTTCATGGGGGGCTTCCTGGT
CATCCTGATCCAAGTTAGCCTGACGCTGACCGCAGTGCCGGACTGGAGCG
CGGACTCAAAGCAAGCCATGATCGACCTCGAACAGGAGAACATCTTGAAG
CTGGCTTCGGATAAGGCCGGGTACGTCGATGAAATTTTC
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Coding sequence (CDS) from alignment at L-digitata_M_contig10013:1214..1652-

>mRNA_L-digitata_M_contig10013.1.1 ID=mRNA_L-digitata_M_contig10013.1.1|Name=mRNA_L-digitata_M_contig10013.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=348bp|location=Sequence derived from alignment at L-digitata_M_contig10013:1214..1652- (Laminaria digitata LdigPH10_18mv male)
ATGCCATCGTCATCATCAACTAGCGCTGGTGCTGCTGTACGTGGGTCGGC
CTCCGCCGCGACGGGGTGGGGCTCGCGGCCATCAAGAGCCGGTTCTACAG
CATCCTCAGCATACGACGAAGAAGAAGCTAACCTTCGTCCGCCACAGGTG
CTCGCTCGGAAGCTCACATGCGCAGTCCTCAGCGTGGTGTTCATGGGGGG
CTTCCTGGTCATCCTGATCCAAGTTAGCCTGACGCTGACCGCAGTGCCGG
ACTGGAGCGCGGACTCAAAGCAAGCCATGATCGACCTCGAACAGGAGAAC
ATCTTGAAGCTGGCTTCGGATAAGGCCGGGTACGTCGATGAAATTTTC
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