mRNA_L-digitata_M_contig9990.2.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig9990.2.1
Unique NamemRNA_L-digitata_M_contig9990.2.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig9990.2.1 vs. uniprot
Match: D7G824_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G824_ECTSI)

HSP 1 Score: 160 bits (404), Expect = 2.960e-42
Identity = 97/150 (64.67%), Postives = 102/150 (68.00%), Query Frame = 1 
Query:    1 AEAAAAEAAGGLGLENLRPHLSELRSAAFQLELCLALHARGCLRLSSRARAQAAVGFRAGLLVEALGRRYDVTATLVGCSPASMEAEENRSPAGXXXXXXXXAQDPGGHAPRGARVDKTSXXXXXXXXXXHERRAWTDTPNAELLVALSR 450
            A  A AEAAGGLGLENLRPHLSELR+AAFQLELCLALHARGCLRLSSRARA+AA+GFRAGLLVE LGRRYDVTA LVGC PAS EA+E R            A  PGG          +             RRAW  TPNAELL ALSR
Sbjct: 3027 ATGAEAEAAGGLGLENLRPHLSELRAAAFQLELCLALHARGCLRLSSRARAEAAMGFRAGLLVETLGRRYDVTAALVGCPPASPEADEPR----LSDSQESEALSPGGXXXXXXXXXXSDRDEG--------RRAWVGTPNAELLDALSR 3164
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BLAST of mRNA_L-digitata_M_contig9990.2.1 vs. uniprot
Match: A0A6H5K928_9PHAE (PDZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K928_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 1.800e-36
Identity = 76/88 (86.36%), Postives = 80/88 (90.91%), Query Frame = 1 
Query:    1 AEAAAAEAAGGLGLENLRPHLSELRSAAFQLELCLALHARGCLRLSSRARAQAAVGFRAGLLVEALGRRYDVTATLVGCSPASMEAEE 264
            A AA AEAAGGLGLENLRPHLSELR+AAFQLELCLALH RGCLRLSSRARA+AA+GFRAGLLVE LGRRYDVT  LVGC PAS EA+E
Sbjct: 3061 APAAEAEAAGGLGLENLRPHLSELRAAAFQLELCLALHERGCLRLSSRARAEAAMGFRAGLLVETLGRRYDVTVALVGCPPASPEADE 3148
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig9990.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G824_ECTSI2.960e-4264.67PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K928_9PHAE1.800e-3686.36PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig9990contigL-digitata_M_contig9990:848..2729 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G824
PFAMsC2,Rav1p_C
Model size511
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue4.85e-43
EggNOG OGsKOG1064@1|root,KOG1064@2759|Eukaryota
Descriptionvacuolar proton-transporting V-type ATPase complex assembly
Cds size510
COG categoryU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408659.0796978-CDS-L-digitata_M_contig9990:847..10531682408659.0796978-CDS-L-digitata_M_contig9990:847..1053Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig9990 848..1053 +
1682408659.0912921-CDS-L-digitata_M_contig9990:1593..18361682408659.0912921-CDS-L-digitata_M_contig9990:1593..1836Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig9990 1594..1836 +
1682408659.1020238-CDS-L-digitata_M_contig9990:2667..27281682408659.1020238-CDS-L-digitata_M_contig9990:2667..2728Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig9990 2668..2728 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig9990.2.1prot_L-digitata_M_contig9990.2.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig9990 848..2728 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig9990.2.1

>prot_L-digitata_M_contig9990.2.1 ID=prot_L-digitata_M_contig9990.2.1|Name=mRNA_L-digitata_M_contig9990.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=170bp
AEAAAAEAAGGLGLENLRPHLSELRSAAFQLELCLALHARGCLRLSSRAR
AQAAVGFRAGLLVEALGRRYDVTATLVGCSPASMEAEENRSPAGGGGGGG
GGAQDPGGHAPRGARVDKTSPEGGGGGGGGHERRAWTDTPNAELLVALSR
LPRPEFETLGLEPWESSLEG
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mRNA from alignment at L-digitata_M_contig9990:848..2729+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig9990.2.1 ID=mRNA_L-digitata_M_contig9990.2.1|Name=mRNA_L-digitata_M_contig9990.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=1882bp|location=Sequence derived from alignment at L-digitata_M_contig9990:848..2729+ (Laminaria digitata LdigPH10_18mv male)
GCGGAGGCGGCCGCGGCGGAGGCGGCTGGTGGGTTGGGGCTGGAGAACTT
GAGGCCGCATCTGTCGGAGCTGAGGTCGGCCGCCTTCCAGCTGGAGCTGT
GCCTGGCGCTGCACGCGCGGGGGTGCTTGAGGCTTAGCTCCCGCGCGAGG
GCGCAGGCGGCGGTGGGGTTCCGGGCGGGGTTGTTGGTGGAGGCCTTGGG
GAGGAGGTGCGTTTTTTTATTTAGCGTTACGTTCATTTGTTTTTTGTTTT
CATTTGTTTTACCGTTGATATACTTGGTATACGTTGAAGGAAATGCTGCT
TACAGCAGTATACACCAAACAGTGTTGCATACGACCAGGTGCGTTTTTGT
ACCGTGGACTCTTCAAATGCAATGCTGCTTACGGTGTACACCAGGCAATG
TTGCATATGATCAGGTGTTTTTTTGTTCACCGTTTACCCTCGGAACGAGA
TGCTGATTACAGTATACTGGTATATACGCCAGACAATCTTGCATTTGATA
CCAGGTGCGTTTTTTTACTGTTGACACTTGGAACGAAATACTGTTACTGC
TTGTACAGCAAAGTTGCATCCCGGGTGCATTTTTCGACCGTTGGCACGTC
GAACGCAATTCATCTATAGTATGATACGATGCGAGATTTTTACCAAGCGC
ACGTCACCAAGCCACGCCCTAACACGACGATTACACGAAACTCTGCTTTG
CGGTGCTGTGCTGTGCTGTGCTGTGCTGTGCTGTGCGTCTTCGCAGGTAC
GACGTTACAGCAACCTTAGTGGGTTGCTCTCCAGCATCTATGGAGGCGGA
AGAAAACCGGAGCCCTGCCGGCGGCGGCGGCGGCGGCGGCGGCGGCGCTC
AAGACCCGGGAGGCCATGCGCCGCGGGGCGCGAGGGTAGACAAAACCTCT
CCGGAGGGGGGCGGCGGCGGCGGTGGAGGGCATGAACGTCGGGCCTGGAC
GGACACGCCGAATGCGGAGTTGCTCGTCGCCCTCTCACGGTGGGTGTGGA
GGAGCAAAATGAGGACGAGAAGGAGGAGGGGGGACAAAAGACTCCGCTTT
TTGTTTTTTGCGTGTTGTGTGGTAGCGTCCGCTTTTATAGGTTCGATGTC
TTGCACACGATCTGGCAGATGGACTCGATAGTGTCTGGCATAAGAAGAGG
GTCTTTGAGGAAGATGGATGAGTTTTTGAACGTGATCAGGTATGACTAGA
GCTCCCGAAGAGTATGAGACGATCCAACAGCTCAGGTGTAAGGGCCGACT
CAAGGGAGTCATCCAGAAAACGACCTGATGTCTCACAGAGGCGTAAGTCT
CTGAAGGGCATTTCTTTAGGGTATTGTTGGGGGCTGGCGACCTTGCAGGC
ACAGCGCTTTGCCGCGTGTTTTCGGGTGGTTGCCTTCGATGTAGGCGCGC
GTCGTGTATCTATGGGTGGATGGATGCGGGCGATTGTAGGTCCTACCGAC
CTCGTTTTTTTTGTGTCCCGTTTACGTGCTCCATGCCAACACTACGAGTA
CTGCTCTCGAATTGACGAACGGAGGTTTTTGGGGGCTCAGTCCCCACCCC
ACCCCACCGCCACGTTGCCGTCGCCCTCCGCCGCATGCATACTGCATGTC
CCCCCTTTCGTTATTTACAGTGCTATTTTCCCGTCCTAACGGTTCTCAAC
GGTTGTATTTTCCCGTCGCAACGGTTCTCACCGGTTCCATTTTCACGTCT
TCGTGATTAGTGCTATTTTCCCGTCCTCACGGTTCTCAACCGTTCTATTT
TCCGCGCTTCGTTCCTTTTTCCCTCATGCTTGTGTTTTAAATAACACCTG
GCGTAATTTTCTGTTTTCAGCCTGCCGCGCCCCGAGTTCGAGACCCTCGG
GCTCGAACCGTGGGAGTCCAGCCTCGAGGGAC
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Coding sequence (CDS) from alignment at L-digitata_M_contig9990:848..2729+

>mRNA_L-digitata_M_contig9990.2.1 ID=mRNA_L-digitata_M_contig9990.2.1|Name=mRNA_L-digitata_M_contig9990.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=510bp|location=Sequence derived from alignment at L-digitata_M_contig9990:848..2729+ (Laminaria digitata LdigPH10_18mv male)
GCGGAGGCGGCCGCGGCGGAGGCGGCTGGTGGGTTGGGGCTGGAGAACTT
GAGGCCGCATCTGTCGGAGCTGAGGTCGGCCGCCTTCCAGCTGGAGCTGT
GCCTGGCGCTGCACGCGCGGGGGTGCTTGAGGCTTAGCTCCCGCGCGAGG
GCGCAGGCGGCGGTGGGGTTCCGGGCGGGGTTGTTGGTGGAGGCCTTGGG
GAGGAGGTACGACGTTACAGCAACCTTAGTGGGTTGCTCTCCAGCATCTA
TGGAGGCGGAAGAAAACCGGAGCCCTGCCGGCGGCGGCGGCGGCGGCGGC
GGCGGCGCTCAAGACCCGGGAGGCCATGCGCCGCGGGGCGCGAGGGTAGA
CAAAACCTCTCCGGAGGGGGGCGGCGGCGGCGGTGGAGGGCATGAACGTC
GGGCCTGGACGGACACGCCGAATGCGGAGTTGCTCGTCGCCCTCTCACGC
CTGCCGCGCCCCGAGTTCGAGACCCTCGGGCTCGAACCGTGGGAGTCCAG
CCTCGAGGGA
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