prot_L-digitata_M_contig9990.2.1 (polypeptide) Laminaria digitata LdigPH10_18mv male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-digitata_M_contig9990.2.1
Unique Nameprot_L-digitata_M_contig9990.2.1
Typepolypeptide
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Sequence length170
Homology
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BLAST of mRNA_L-digitata_M_contig9990.2.1 vs. uniprot
Match: D7G824_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G824_ECTSI)

HSP 1 Score: 160 bits (404), Expect = 2.960e-42
Identity = 97/150 (64.67%), Postives = 102/150 (68.00%), Query Frame = 0 
Query:    1 AEAAAAEAAGGLGLENLRPHLSELRSAAFQLELCLALHARGCLRLSSRARAQAAVGFRAGLLVEALGRRYDVTATLVGCSPASMEAEENRSPAGXXXXXXXXAQDPGGHAPRGARVDKTSXXXXXXXXXXHERRAWTDTPNAELLVALSR 150
            A  A AEAAGGLGLENLRPHLSELR+AAFQLELCLALHARGCLRLSSRARA+AA+GFRAGLLVE LGRRYDVTA LVGC PAS EA+E R            A  PGG          +             RRAW  TPNAELL ALSR
Sbjct: 3027 ATGAEAEAAGGLGLENLRPHLSELRAAAFQLELCLALHARGCLRLSSRARAEAAMGFRAGLLVETLGRRYDVTAALVGCPPASPEADEPR----LSDSQESEALSPGGXXXXXXXXXXSDRDEG--------RRAWVGTPNAELLDALSR 3164
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BLAST of mRNA_L-digitata_M_contig9990.2.1 vs. uniprot
Match: A0A6H5K928_9PHAE (PDZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K928_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 1.800e-36
Identity = 76/88 (86.36%), Postives = 80/88 (90.91%), Query Frame = 0 
Query:    1 AEAAAAEAAGGLGLENLRPHLSELRSAAFQLELCLALHARGCLRLSSRARAQAAVGFRAGLLVEALGRRYDVTATLVGCSPASMEAEE 88
            A AA AEAAGGLGLENLRPHLSELR+AAFQLELCLALH RGCLRLSSRARA+AA+GFRAGLLVE LGRRYDVT  LVGC PAS EA+E
Sbjct: 3061 APAAEAEAAGGLGLENLRPHLSELRAAAFQLELCLALHERGCLRLSSRARAEAAMGFRAGLLVETLGRRYDVTVALVGCPPASPEADE 3148
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig9990.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G824_ECTSI2.960e-4264.67PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K928_9PHAE1.800e-3686.36PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 82..142

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig9990contigL-digitata_M_contig9990:848..2728 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig9990.2.1mRNA_L-digitata_M_contig9990.2.1Laminaria digitata LdigPH10_18mv malemRNAL-digitata_M_contig9990 848..2729 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-digitata_M_contig9990.2.1 ID=prot_L-digitata_M_contig9990.2.1|Name=mRNA_L-digitata_M_contig9990.2.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=170bp
AEAAAAEAAGGLGLENLRPHLSELRSAAFQLELCLALHARGCLRLSSRAR
AQAAVGFRAGLLVEALGRRYDVTATLVGCSPASMEAEENRSPAGGGGGGG
GGAQDPGGHAPRGARVDKTSPEGGGGGGGGHERRAWTDTPNAELLVALSR
LPRPEFETLGLEPWESSLEG
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