mRNA_L-digitata_M_contig98443.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-digitata_M_contig98443.1.1
Unique NamemRNA_L-digitata_M_contig98443.1.1
TypemRNA
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Homology
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BLAST of mRNA_L-digitata_M_contig98443.1.1 vs. uniprot
Match: A0A661P1N5_9DELT (Uncharacterized protein n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A661P1N5_9DELT)

HSP 1 Score: 51.2 bits (121), Expect = 2.290e-5
Identity = 23/67 (34.33%), Postives = 40/67 (59.70%), Query Frame = 1 
Query:   73 GFLDIQVDHDGARIFVDGAIIGLSPYKQKKQVEAGKHQVQVELLGFNRWAGEVEVKRDETTIVPVAL 273
            G+L I    DGAR++VDG ++G +P+K+  ++  GKH+++    GF  +  E  ++R   T + V L
Sbjct:   38 GWLVIDSPVDGARVYVDGRLVGKTPFKRPLKLRPGKHRLKATKAGFGTFKTEFRIRRGRRTEISVDL 104
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BLAST of mRNA_L-digitata_M_contig98443.1.1 vs. uniprot
Match: A0A7V6B6G4_9DELT (PEGA domain-containing protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7V6B6G4_9DELT)

HSP 1 Score: 50.8 bits (120), Expect = 3.640e-5
Identity = 29/91 (31.87%), Postives = 52/91 (57.14%), Query Frame = 1 
Query:    1 KRTFVMPDDKPLALDFKLKKLENVGFLDIQVDHDGARIFVDGAIIGLSPYKQKKQVEAGKHQVQVELLGFNRWAGEVEVKRDETTIVPVAL 273
            K   V P + P+ L+F L +    G L   V+   ARI++DG ++ ++PY+   +V+AG HQV +E   + +++  V V+ ++T  V  +L
Sbjct:  251 KEVVVRPKE-PMKLNFSLSR--ESGGLAFNVNVAKARIYIDGKVVAITPYRDVVRVQAGAHQVVIEKERYTKFSETVTVEPNQTIEVKASL 338
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig98443.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A661P1N5_9DELT2.290e-534.33Uncharacterized protein n=2 Tax=Proteobacteria Tax... [more]
A0A7V6B6G4_9DELT3.640e-531.87PEGA domain-containing protein n=1 Tax=Deltaproteo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig98443contigL-digitata_M_contig98443:671..967 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog323259.Mhun_2301
PFAMsPEGA
Model size297
Max annot lvl2157|Archaea
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000118
EggNOG OGsarCOG03264@1|root,arCOG03264@2157|Archaea
Cds size282
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408641.5420258-CDS-L-digitata_M_contig98443:670..9521682408641.5420258-CDS-L-digitata_M_contig98443:670..952Laminaria digitata LdigPH10_18mv maleCDSL-digitata_M_contig98443 671..952 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682408641.5549655-UTR-L-digitata_M_contig98443:952..9671682408641.5549655-UTR-L-digitata_M_contig98443:952..967Laminaria digitata LdigPH10_18mv maleUTRL-digitata_M_contig98443 953..967 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig98443.1.1prot_L-digitata_M_contig98443.1.1Laminaria digitata LdigPH10_18mv malepolypeptideL-digitata_M_contig98443 671..952 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-digitata_M_contig98443.1.1

>prot_L-digitata_M_contig98443.1.1 ID=prot_L-digitata_M_contig98443.1.1|Name=mRNA_L-digitata_M_contig98443.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=94bp
MPDDKPLALDFKLKKLENVGFLDIQVDHDGARIFVDGAIIGLSPYKQKKQ
VEAGKHQVQVELLGFNRWAGEVEVKRDETTIVPVALVEYVAPVK
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mRNA from alignment at L-digitata_M_contig98443:671..967-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-digitata_M_contig98443.1.1 ID=mRNA_L-digitata_M_contig98443.1.1|Name=mRNA_L-digitata_M_contig98443.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=297bp|location=Sequence derived from alignment at L-digitata_M_contig98443:671..967- (Laminaria digitata LdigPH10_18mv male)
AAGCGCACCTTCGTGATGCCCGATGACAAACCGCTCGCCTTGGACTTCAA
GCTCAAGAAGCTGGAGAACGTGGGCTTTTTGGACATTCAGGTCGACCACG
ACGGCGCACGAATCTTCGTCGATGGCGCCATCATCGGCCTGTCTCCTTAC
AAGCAGAAGAAGCAGGTCGAGGCCGGTAAGCACCAGGTGCAAGTTGAGTT
GCTCGGCTTTAACCGCTGGGCCGGTGAGGTCGAGGTCAAGCGCGACGAGA
CCACGATCGTGCCCGTCGCGCTCGTCGAGTACGTGGCGCCGGTCAAG
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Coding sequence (CDS) from alignment at L-digitata_M_contig98443:671..967-

>mRNA_L-digitata_M_contig98443.1.1 ID=mRNA_L-digitata_M_contig98443.1.1|Name=mRNA_L-digitata_M_contig98443.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=282bp|location=Sequence derived from alignment at L-digitata_M_contig98443:671..967- (Laminaria digitata LdigPH10_18mv male)
ATGCCCGATGACAAACCGCTCGCCTTGGACTTCAAGCTCAAGAAGCTGGA
GAACGTGGGCTTTTTGGACATTCAGGTCGACCACGACGGCGCACGAATCT
TCGTCGATGGCGCCATCATCGGCCTGTCTCCTTACAAGCAGAAGAAGCAG
GTCGAGGCCGGTAAGCACCAGGTGCAAGTTGAGTTGCTCGGCTTTAACCG
CTGGGCCGGTGAGGTCGAGGTCAAGCGCGACGAGACCACGATCGTGCCCG
TCGCGCTCGTCGAGTACGTGGCGCCGGTCAAG
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