mRNA_L-digitata_M_contig100557.1.1 (mRNA) Laminaria digitata LdigPH10_18mv male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_L-digitata_M_contig100557.1.1
Unique Name	mRNA_L-digitata_M_contig100557.1.1
Type	mRNA
Organism	Laminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))

Homology

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BLAST of mRNA_L-digitata_M_contig100557.1.1 vs. uniprot
Match: A0A6H5JLG6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLG6_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 1.450e-25
Identity = 59/137 (43.07%), Postives = 82/137 (59.85%), Query Frame = 1

Query:    4 PADVFFRMDSEETRTIACSSCVQQGEPMGPAMFCLALRPGLKRFRQEFEGEGVEASVYMDAVSLSLMGITANTVRAFVFLRRELDDIGIVVSSAKTVALPPKGHASTAEKISLLESVDVRISDEGRVTVVSVPIGTE 414
            PA   + MDS E RTI C S VQQG+ MGP +FC  L P + + R +++  GV    Y+D +SL    ITA  ++    L  EL+ +GI+V+  K+ ALPP GH  T  +  LL    + I++EG +TVV VPIGT+
Sbjct:  186 PAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVSKVRAKYDHLGVSLKAYVDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEEG-ITVVGVPIGTD 321

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BLAST of mRNA_L-digitata_M_contig100557.1.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 2.030e-25
Identity = 60/137 (43.80%), Postives = 82/137 (59.85%), Query Frame = 1

Query:    4 PADVFFRMDSEETRTIACSSCVQQGEPMGPAMFCLALRPGLKRFRQEFEGEGVEASVYMDAVSLSLMGITANTVRAFVFLRRELDDIGIVVSSAKTVALPPKGHASTAEKISLLESVDVRISDEGRVTVVSVPIGTE 414
            PA   + MDS E RTI C S VQQG+ MGP +FC  L P + + R +++  GV    YMD +SL    ITA  ++    L  EL+ +GI+V+  K+ ALPP GH  T  +  LL    + I++EG +TVV VPIGT+
Sbjct:  547 PAKAIYAMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEEG-ITVVGVPIGTD 682

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BLAST of mRNA_L-digitata_M_contig100557.1.1 vs. uniprot
Match: A0A6H5JHZ7_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHZ7_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 4.570e-25
Identity = 60/137 (43.80%), Postives = 81/137 (59.12%), Query Frame = 1

Query:    4 PADVFFRMDSEETRTIACSSCVQQGEPMGPAMFCLALRPGLKRFRQEFEGEGVEASVYMDAVSLSLMGITANTVRAFVFLRRELDDIGIVVSSAKTVALPPKGHASTAEKISLLESVDVRISDEGRVTVVSVPIGTE 414
            PA   + MDS E RTI C S VQQG+ MGP +FC  L P + + R +++  GV    YMD +SL    ITA  ++    L  EL+ +GI+V+  K+ ALPP GH  T     LL    + I++EG +TVV VPIGT+
Sbjct:   23 PAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAGRRLLGDAGLPIAEEG-ITVVGVPIGTD 158

[Close]

BLAST of mRNA_L-digitata_M_contig100557.1.1 vs. uniprot
Match: A0A6H5KYJ9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYJ9_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 4.820e-25
Identity = 59/137 (43.07%), Postives = 82/137 (59.85%), Query Frame = 1

Query:    4 PADVFFRMDSEETRTIACSSCVQQGEPMGPAMFCLALRPGLKRFRQEFEGEGVEASVYMDAVSLSLMGITANTVRAFVFLRRELDDIGIVVSSAKTVALPPKGHASTAEKISLLESVDVRISDEGRVTVVSVPIGTE 414
            PA   + MDS E RTI C S VQQG+ MGP +FC  L P + + R +++  GV    YMD +SL    ITA  ++    +  EL+ +GI+V+  K+ ALPP GH  T  +  LL    + I++EG +TVV VPIGT+
Sbjct:   94 PAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDVVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEEG-ITVVGVPIGTD 229

[Close]

BLAST of mRNA_L-digitata_M_contig100557.1.1 vs. uniprot
Match: A0A6H5K0V7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0V7_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 5.540e-25
Identity = 60/137 (43.80%), Postives = 81/137 (59.12%), Query Frame = 1

Query:    4 PADVFFRMDSEETRTIACSSCVQQGEPMGPAMFCLALRPGLKRFRQEFEGEGVEASVYMDAVSLSLMGITANTVRAFVFLRRELDDIGIVVSSAKTVALPPKGHASTAEKISLLESVDVRISDEGRVTVVSVPIGTE 414
            PA   + MDS E RTI C S VQQG+ MGP +FC  L P + + R  ++  GV    YMD +SL    ITA  ++    L  EL+ +GI+V+  K+ ALPP GH  T  +  LL    + I++EG +TVV VPIGT+
Sbjct:  171 PAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAMYDHLGVCLKAYMDDISLHFNNITAENIQLIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEEG-ITVVGVPIGTD 306

[Close]

BLAST of mRNA_L-digitata_M_contig100557.1.1 vs. uniprot
Match: A0A6H5LL14_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL14_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 6.430e-25
Identity = 60/138 (43.48%), Postives = 82/138 (59.42%), Query Frame = 1

Query:    4 PADVFFRMDSEETRTIACSSCVQQGEPMGPAMFCLALRPGLKRFRQEFEGEGVEASVYMD-AVSLSLMGITANTVRAFVFLRRELDDIGIVVSSAKTVALPPKGHASTAEKISLLESVDVRISDEGRVTVVSVPIGTE 414
            PA   + MDS E RTI C S VQQG+ MGP +FC  L P + + R +++  GV    YMD  +SL    ITA  ++    L  EL+ +GI+V+  K+ ALPP GH  T  +  LL    + I++EG +TVV VPIGT+
Sbjct:  178 PAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFTLVPIVLKLRAKYDNLGVRLKAYMDDIISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEEG-ITVVGVPIGTD 314

[Close]

BLAST of mRNA_L-digitata_M_contig100557.1.1 vs. uniprot
Match: A0A6H5KJC0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJC0_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 6.730e-25
Identity = 59/137 (43.07%), Postives = 81/137 (59.12%), Query Frame = 1

Query:    4 PADVFFRMDSEETRTIACSSCVQQGEPMGPAMFCLALRPGLKRFRQEFEGEGVEASVYMDAVSLSLMGITANTVRAFVFLRRELDDIGIVVSSAKTVALPPKGHASTAEKISLLESVDVRISDEGRVTVVSVPIGTE 414
            PA   + MDS E RTI C S VQQG+ MGP +FC  L P + + R +++  GV    YMD +SL    ITA  ++    L  EL+ +GI+V+  K+ ALPP GH  T  +  LL    + I++EG +TVV VPI T+
Sbjct:  573 PAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVSLKAYMDDISLHFKNITAEFIQVIPDLVNELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEEG-ITVVGVPIETD 708

[Close]

BLAST of mRNA_L-digitata_M_contig100557.1.1 vs. uniprot
Match: A0A6H5KR59_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR59_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 1.250e-24
Identity = 58/137 (42.34%), Postives = 80/137 (58.39%), Query Frame = 1

Query:    4 PADVFFRMDSEETRTIACSSCVQQGEPMGPAMFCLALRPGLKRFRQEFEGEGVEASVYMDAVSLSLMGITANTVRAFVFLRRELDDIGIVVSSAKTVALPPKGHASTAEKISLLESVDVRISDEGRVTVVSVPIGTE 414
            PA   + MDS   RTI C   VQQG+ MGP +FC  L P + + R +++  GV    YMD +SL    ITA  ++    L  EL+ +GI+V+  K+ ALPP GH  T  +  LL    + I++EG +TVV VPIGT+
Sbjct:  269 PAKAIYTMDSGARRTIECKGGVQQGDGMGPPLFCFILVPIILKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEEG-ITVVGVPIGTD 404

[Close]

BLAST of mRNA_L-digitata_M_contig100557.1.1 vs. uniprot
Match: A0A6H5KKQ2_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKQ2_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 4.310e-24
Identity = 59/137 (43.07%), Postives = 81/137 (59.12%), Query Frame = 1

Query:    4 PADVFFRMDSEETRTIACSSCVQQGEPMGPAMFCLALRPGLKRFRQEFEGEGVEASVYMDAVSLSLMGITANTVRAFVFLRRELDDIGIVVSSAKTVALPPKGHASTAEKISLLESVDVRISDEGRVTVVSVPIGTE 414
            PA   + MDS E RTI C S VQQG+ MGP +FC  L P + + R +++  GV    YMD +SL    ITA  ++    L  EL+ +GI+V+  K+ ALPP GH  T  +   L    + I++EG +TVV VPIGT+
Sbjct:  546 PAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKDITAENIQVTPDLVDELEAVGIIVNRGKSSALPPPGHDVTPTERRPLGDAGLPIAEEG-ITVVGVPIGTD 681

[Close]

BLAST of mRNA_L-digitata_M_contig100557.1.1 vs. uniprot
Match: A0A6H5J7C4_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7C4_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 4.160e-23
Identity = 57/130 (43.85%), Postives = 78/130 (60.00%), Query Frame = 1

Query:   25 MDSEETRTIACSSCVQQGEPMGPAMFCLALRPGLKRFRQEFEGEGVEASVYMDAVSLSLMGITANTVRAFVFLRRELDDIGIVVSSAKTVALPPKGHASTAEKISLLESVDVRISDEGRVTVVSVPIGTE 414
            MDS E RTI C S VQQG+ MGP +FC  L P + + R +++  GV    YMD +SL    ITA  ++    L  EL+ +GI+V+  K+ ALPP GH  T  +  LL    + I++EG +TVV VPIG +
Sbjct:    1 MDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKSYMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEEG-ITVVGVPIGKD 129

The following BLAST results are available for this feature:

BLAST of mRNA_L-digitata_M_contig100557.1.1 vs. uniprot

BLAST of mRNA_L-digitata_M_contig100557.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24


Match Name	E-value	Identity	Description
A0A6H5JLG6_9PHAE	1.450e-25	43.07	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5KMQ2_9PHAE	2.030e-25	43.80	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5JHZ7_9PHAE	4.570e-25	43.80	Reverse transcriptase domain-containing protein (F...	[more]
A0A6H5KYJ9_9PHAE	4.820e-25	43.07	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5K0V7_9PHAE	5.540e-25	43.80	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5LL14_9PHAE	6.430e-25	43.48	Reverse transcriptase domain-containing protein (F...	[more]
A0A6H5KJC0_9PHAE	6.730e-25	43.07	Reverse transcriptase domain-containing protein (F...	[more]
A0A6H5KR59_9PHAE	1.250e-24	42.34	Reverse transcriptase domain-containing protein (F...	[more]
A0A6H5KKQ2_9PHAE	4.310e-24	43.07	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5J7C4_9PHAE	4.160e-23	43.85	Reverse transcriptase domain-containing protein (F...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-digitata_M_contig100557	contig	L-digitata_M_contig100557:98..514 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Laminaria digitata LdigPH10_18mv male OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Model size	417
Hectar predicted targeting category	other localisation
Exons	1
Cds size	393

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1682406608.246772-CDS-L-digitata_M_contig100557:97..490	1682406608.246772-CDS-L-digitata_M_contig100557:97..490	Laminaria digitata LdigPH10_18mv male	CDS	L-digitata_M_contig100557 98..490 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1682406608.2556431-UTR-L-digitata_M_contig100557:490..514	1682406608.2556431-UTR-L-digitata_M_contig100557:490..514	Laminaria digitata LdigPH10_18mv male	UTR	L-digitata_M_contig100557 491..514 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_L-digitata_M_contig100557.1.1	prot_L-digitata_M_contig100557.1.1	Laminaria digitata LdigPH10_18mv male	polypeptide	L-digitata_M_contig100557 98..490 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at L-digitata_M_contig100557:98..514-
coding sequence from alignment at L-digitata_M_contig100557:98..514-

protein sequence of mRNA_L-digitata_M_contig100557.1.1

>prot_L-digitata_M_contig100557.1.1 ID=prot_L-digitata_M_contig100557.1.1|Name=mRNA_L-digitata_M_contig100557.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=131bp
MDSEETRTIACSSCVQQGEPMGPAMFCLALRPGLKRFRQEFEGEGVEASV
YMDAVSLSLMGITANTVRAFVFLRRELDDIGIVVSSAKTVALPPKGHAST
AEKISLLESVDVRISDEGRVTVVSVPIGTE*

mRNA from alignment at L-digitata_M_contig100557:98..514-

Legend: UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_L-digitata_M_contig100557.1.1 ID=mRNA_L-digitata_M_contig100557.1.1|Name=mRNA_L-digitata_M_contig100557.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=mRNA|length=417bp|location=Sequence derived from alignment at L-digitata_M_contig100557:98..514- (Laminaria digitata LdigPH10_18mv male)
AGACCCGCCGACGTGTTCTTCCGGATGGACTCAGAGGAGACCAGGACGAT
CGCTTGCTCCAGCTGTGTCCAGCAGGGGGAACCCATGGGCCCGGCAATGT
TCTGCCTGGCGTTACGACCGGGGCTGAAGCGATTCAGACAGGAATTCGAG
GGAGAAGGAGTGGAAGCCTCCGTGTACATGGACGCTGTCTCTCTCAGCCT
TATGGGGATCACGGCCAACACGGTTAGAGCGTTCGTCTTCCTCCGGCGAG
AGCTAGATGACATCGGCATTGTGGTCAGCTCCGCCAAGACAGTGGCACTA
CCACCCAAAGGGCACGCCTCGACGGCGGAGAAGATTTCGCTTCTGGAAAG
CGTTGACGTCCGCATCTCAGACGAAGGAAGGGTGACGGTGGTGAGTGTCC
CGATTGGCACGGAATAA

Coding sequence (CDS) from alignment at L-digitata_M_contig100557:98..514-

>mRNA_L-digitata_M_contig100557.1.1 ID=mRNA_L-digitata_M_contig100557.1.1|Name=mRNA_L-digitata_M_contig100557.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=CDS|length=393bp|location=Sequence derived from alignment at L-digitata_M_contig100557:98..514- (Laminaria digitata LdigPH10_18mv male)
ATGGACTCAGAGGAGACCAGGACGATCGCTTGCTCCAGCTGTGTCCAGCA
GGGGGAACCCATGGGCCCGGCAATGTTCTGCCTGGCGTTACGACCGGGGC
TGAAGCGATTCAGACAGGAATTCGAGGGAGAAGGAGTGGAAGCCTCCGTG
TACATGGACGCTGTCTCTCTCAGCCTTATGGGGATCACGGCCAACACGGT
TAGAGCGTTCGTCTTCCTCCGGCGAGAGCTAGATGACATCGGCATTGTGG
TCAGCTCCGCCAAGACAGTGGCACTACCACCCAAAGGGCACGCCTCGACG
GCGGAGAAGATTTCGCTTCTGGAAAGCGTTGACGTCCGCATCTCAGACGA
AGGAAGGGTGACGGTGGTGAGTGTCCCGATTGGCACGGAATAA