prot_L-digitata_M_contig100557.1.1 (polypeptide) Laminaria digitata LdigPH10_18mv male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-digitata_M_contig100557.1.1
Unique Nameprot_L-digitata_M_contig100557.1.1
Typepolypeptide
OrganismLaminaria digitata LdigPH10_18mv male (Laminaria digitata LdigPH10_18mv male (Oarweed))
Sequence length131
Homology
BLAST of mRNA_L-digitata_M_contig100557.1.1 vs. uniprot
Match: A0A6H5JLG6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLG6_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 1.130e-23
Identity = 57/130 (43.85%), Postives = 79/130 (60.77%), Query Frame = 0
Query:    1 MDSEETRTIACSSCVQQGEPMGPAMFCLALRPGLKRFRQEFEGEGVEASVYMDAVSLSLMGITANTVRAFVFLRRELDDIGIVVSSAKTVALPPKGHASTAEKISLLESVDVRISDEGRVTVVSVPIGTE 130
            MDS E RTI C S VQQG+ MGP +FC  L P + + R +++  GV    Y+D +SL    ITA  ++    L  EL+ +GI+V+  K+ ALPP GH  T  +  LL    + I++EG +TVV VPIGT+
Sbjct:  193 MDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVSKVRAKYDHLGVSLKAYVDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEEG-ITVVGVPIGTD 321          
BLAST of mRNA_L-digitata_M_contig100557.1.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 1.580e-23
Identity = 58/130 (44.62%), Postives = 79/130 (60.77%), Query Frame = 0
Query:    1 MDSEETRTIACSSCVQQGEPMGPAMFCLALRPGLKRFRQEFEGEGVEASVYMDAVSLSLMGITANTVRAFVFLRRELDDIGIVVSSAKTVALPPKGHASTAEKISLLESVDVRISDEGRVTVVSVPIGTE 130
            MDS E RTI C S VQQG+ MGP +FC  L P + + R +++  GV    YMD +SL    ITA  ++    L  EL+ +GI+V+  K+ ALPP GH  T  +  LL    + I++EG +TVV VPIGT+
Sbjct:  554 MDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEEG-ITVVGVPIGTD 682          
BLAST of mRNA_L-digitata_M_contig100557.1.1 vs. uniprot
Match: A0A6H5JHZ7_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHZ7_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 3.690e-23
Identity = 58/130 (44.62%), Postives = 78/130 (60.00%), Query Frame = 0
Query:    1 MDSEETRTIACSSCVQQGEPMGPAMFCLALRPGLKRFRQEFEGEGVEASVYMDAVSLSLMGITANTVRAFVFLRRELDDIGIVVSSAKTVALPPKGHASTAEKISLLESVDVRISDEGRVTVVSVPIGTE 130
            MDS E RTI C S VQQG+ MGP +FC  L P + + R +++  GV    YMD +SL    ITA  ++    L  EL+ +GI+V+  K+ ALPP GH  T     LL    + I++EG +TVV VPIGT+
Sbjct:   30 MDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAGRRLLGDAGLPIAEEG-ITVVGVPIGTD 158          
BLAST of mRNA_L-digitata_M_contig100557.1.1 vs. uniprot
Match: A0A6H5KYJ9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYJ9_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 3.810e-23
Identity = 57/130 (43.85%), Postives = 79/130 (60.77%), Query Frame = 0
Query:    1 MDSEETRTIACSSCVQQGEPMGPAMFCLALRPGLKRFRQEFEGEGVEASVYMDAVSLSLMGITANTVRAFVFLRRELDDIGIVVSSAKTVALPPKGHASTAEKISLLESVDVRISDEGRVTVVSVPIGTE 130
            MDS E RTI C S VQQG+ MGP +FC  L P + + R +++  GV    YMD +SL    ITA  ++    +  EL+ +GI+V+  K+ ALPP GH  T  +  LL    + I++EG +TVV VPIGT+
Sbjct:  101 MDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDVVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEEG-ITVVGVPIGTD 229          
BLAST of mRNA_L-digitata_M_contig100557.1.1 vs. uniprot
Match: A0A6H5J7C4_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7C4_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 4.370e-23
Identity = 57/130 (43.85%), Postives = 78/130 (60.00%), Query Frame = 0
Query:    1 MDSEETRTIACSSCVQQGEPMGPAMFCLALRPGLKRFRQEFEGEGVEASVYMDAVSLSLMGITANTVRAFVFLRRELDDIGIVVSSAKTVALPPKGHASTAEKISLLESVDVRISDEGRVTVVSVPIGTE 130
            MDS E RTI C S VQQG+ MGP +FC  L P + + R +++  GV    YMD +SL    ITA  ++    L  EL+ +GI+V+  K+ ALPP GH  T  +  LL    + I++EG +TVV VPIG +
Sbjct:    1 MDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKSYMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEEG-ITVVGVPIGKD 129          
BLAST of mRNA_L-digitata_M_contig100557.1.1 vs. uniprot
Match: A0A6H5K0V7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0V7_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 5.050e-23
Identity = 58/130 (44.62%), Postives = 78/130 (60.00%), Query Frame = 0
Query:    1 MDSEETRTIACSSCVQQGEPMGPAMFCLALRPGLKRFRQEFEGEGVEASVYMDAVSLSLMGITANTVRAFVFLRRELDDIGIVVSSAKTVALPPKGHASTAEKISLLESVDVRISDEGRVTVVSVPIGTE 130
            MDS E RTI C S VQQG+ MGP +FC  L P + + R  ++  GV    YMD +SL    ITA  ++    L  EL+ +GI+V+  K+ ALPP GH  T  +  LL    + I++EG +TVV VPIGT+
Sbjct:  178 MDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAMYDHLGVCLKAYMDDISLHFNNITAENIQLIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEEG-ITVVGVPIGTD 306          
BLAST of mRNA_L-digitata_M_contig100557.1.1 vs. uniprot
Match: A0A6H5LL14_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL14_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 5.120e-23
Identity = 58/131 (44.27%), Postives = 79/131 (60.31%), Query Frame = 0
Query:    1 MDSEETRTIACSSCVQQGEPMGPAMFCLALRPGLKRFRQEFEGEGVEASVYMD-AVSLSLMGITANTVRAFVFLRRELDDIGIVVSSAKTVALPPKGHASTAEKISLLESVDVRISDEGRVTVVSVPIGTE 130
            MDS E RTI C S VQQG+ MGP +FC  L P + + R +++  GV    YMD  +SL    ITA  ++    L  EL+ +GI+V+  K+ ALPP GH  T  +  LL    + I++EG +TVV VPIGT+
Sbjct:  185 MDSGERRTIECKSGVQQGDGMGPPLFCFTLVPIVLKLRAKYDNLGVRLKAYMDDIISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEEG-ITVVGVPIGTD 314          
BLAST of mRNA_L-digitata_M_contig100557.1.1 vs. uniprot
Match: A0A6H5KJC0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJC0_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 5.270e-23
Identity = 57/130 (43.85%), Postives = 78/130 (60.00%), Query Frame = 0
Query:    1 MDSEETRTIACSSCVQQGEPMGPAMFCLALRPGLKRFRQEFEGEGVEASVYMDAVSLSLMGITANTVRAFVFLRRELDDIGIVVSSAKTVALPPKGHASTAEKISLLESVDVRISDEGRVTVVSVPIGTE 130
            MDS E RTI C S VQQG+ MGP +FC  L P + + R +++  GV    YMD +SL    ITA  ++    L  EL+ +GI+V+  K+ ALPP GH  T  +  LL    + I++EG +TVV VPI T+
Sbjct:  580 MDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVSLKAYMDDISLHFKNITAEFIQVIPDLVNELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEEG-ITVVGVPIETD 708          
BLAST of mRNA_L-digitata_M_contig100557.1.1 vs. uniprot
Match: A0A6H5KR59_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR59_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 1.240e-22
Identity = 56/130 (43.08%), Postives = 77/130 (59.23%), Query Frame = 0
Query:    1 MDSEETRTIACSSCVQQGEPMGPAMFCLALRPGLKRFRQEFEGEGVEASVYMDAVSLSLMGITANTVRAFVFLRRELDDIGIVVSSAKTVALPPKGHASTAEKISLLESVDVRISDEGRVTVVSVPIGTE 130
            MDS   RTI C   VQQG+ MGP +FC  L P + + R +++  GV    YMD +SL    ITA  ++    L  EL+ +GI+V+  K+ ALPP GH  T  +  LL    + I++EG +TVV VPIGT+
Sbjct:  276 MDSGARRTIECKGGVQQGDGMGPPLFCFILVPIILKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEEG-ITVVGVPIGTD 404          
BLAST of mRNA_L-digitata_M_contig100557.1.1 vs. uniprot
Match: A0A6H5KKQ2_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKQ2_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 3.390e-22
Identity = 57/130 (43.85%), Postives = 78/130 (60.00%), Query Frame = 0
Query:    1 MDSEETRTIACSSCVQQGEPMGPAMFCLALRPGLKRFRQEFEGEGVEASVYMDAVSLSLMGITANTVRAFVFLRRELDDIGIVVSSAKTVALPPKGHASTAEKISLLESVDVRISDEGRVTVVSVPIGTE 130
            MDS E RTI C S VQQG+ MGP +FC  L P + + R +++  GV    YMD +SL    ITA  ++    L  EL+ +GI+V+  K+ ALPP GH  T  +   L    + I++EG +TVV VPIGT+
Sbjct:  553 MDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKDITAENIQVTPDLVDELEAVGIIVNRGKSSALPPPGHDVTPTERRPLGDAGLPIAEEG-ITVVGVPIGTD 681          
The following BLAST results are available for this feature:
BLAST of mRNA_L-digitata_M_contig100557.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5JLG6_9PHAE1.130e-2343.85Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KMQ2_9PHAE1.580e-2344.62Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JHZ7_9PHAE3.690e-2344.62Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KYJ9_9PHAE3.810e-2343.85Reverse transcriptase domain-containing protein n=... [more]
A0A6H5J7C4_9PHAE4.370e-2343.85Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K0V7_9PHAE5.050e-2344.62Reverse transcriptase domain-containing protein n=... [more]
A0A6H5LL14_9PHAE5.120e-2344.27Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KJC0_9PHAE5.270e-2343.85Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KR59_9PHAE1.240e-2243.08Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KKQ2_9PHAE3.390e-2243.85Reverse transcriptase domain-containing protein n=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 3..92
e-value: 2.6E-7
score: 30.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-digitata_M_contig100557contigL-digitata_M_contig100557:98..490 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Laminaria digitata LdigPH10_18mv male OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-digitata_M_contig100557.1.1mRNA_L-digitata_M_contig100557.1.1Laminaria digitata LdigPH10_18mv malemRNAL-digitata_M_contig100557 98..514 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-digitata_M_contig100557.1.1 ID=prot_L-digitata_M_contig100557.1.1|Name=mRNA_L-digitata_M_contig100557.1.1|organism=Laminaria digitata LdigPH10_18mv male|type=polypeptide|length=131bp
MDSEETRTIACSSCVQQGEPMGPAMFCLALRPGLKRFRQEFEGEGVEASV
YMDAVSLSLMGITANTVRAFVFLRRELDDIGIVVSSAKTVALPPKGHAST
AEKISLLESVDVRISDEGRVTVVSVPIGTE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom