mRNA_H-elongata_contig184997.4994.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig184997.4994.1
Unique NamemRNA_H-elongata_contig184997.4994.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig184997.4994.1 vs. uniprot
Match: A0A6H5KNU7_9PHAE (Carn_acyltransf domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KNU7_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 9.150e-17
Identity = 40/68 (58.82%), Postives = 49/68 (72.06%), Query Frame = 1 
Query:    1 KVHDGTFESDPHPAAPDCLYGHALQCSTARVALKGRDKVELYPESRHAAVFSNNRVFRIDLLGREDGE 204
            +V DGTF+  P  A P C+ G+ALQ   ARVA KGRD V+ YPESRH  VF NNR+F++ LLG EDG+
Sbjct:  134 RVLDGTFQ--PDAARPGCVRGYALQGGGARVAEKGRDTVQHYPESRHVVVFCNNRIFKVGLLGGEDGQ 199
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig184997.4994.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KNU7_9PHAE9.150e-1758.82Carn_acyltransf domain-containing protein n=2 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig184997contigH-elongata_contig184997:795..1001 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.9
Seed ortholog evalue8.1e-15
Seed eggNOG ortholog2880.D7FX63
KEGG rclassRC00004,RC00037,RC02816
KEGG koko:K08766
KEGG ReactionR01923
KEGG Pathwayko00071,ko01212,ko03320,ko04714,map00071,map01212,map03320,map04714
EggNOG free text desc.carnitine O-acyltransferase activity
EggNOG OGsKOG3719@1,KOG3719@2759
EC2.3.1.21
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size207
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930058.8295836-CDS-H-elongata_contig184997:794..10011622930058.8295836-CDS-H-elongata_contig184997:794..1001Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig184997 795..1001 +
1691679264.8160028-CDS-H-elongata_contig184997:794..10011691679264.8160028-CDS-H-elongata_contig184997:794..1001Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig184997 795..1001 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig184997.4994.1prot_H-elongata_contig184997.4994.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig184997 795..1001 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig184997.4994.1

>prot_H-elongata_contig184997.4994.1 ID=prot_H-elongata_contig184997.4994.1|Name=mRNA_H-elongata_contig184997.4994.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
KVHDGTFESDPHPAAPDCLYGHALQCSTARVALKGRDKVELYPESRHAAV
FSNNRVFRIDLLGREDGEL
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mRNA from alignment at H-elongata_contig184997:795..1001+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig184997.4994.1 ID=mRNA_H-elongata_contig184997.4994.1|Name=mRNA_H-elongata_contig184997.4994.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=207bp|location=Sequence derived from alignment at H-elongata_contig184997:795..1001+ (Himanthalia elongata Himel1 dioecious)
AAGGTGCACGACGGCACGTTCGAGTCAGATCCTCATCCCGCCGCCCCCGA
CTGCCTCTACGGGCACGCCCTCCAGTGCAGCACAGCTAGGGTAGCCCTCA
AGGGGCGGGACAAGGTGGAGTTATACCCGGAGTCTCGACACGCCGCGGTG
TTCTCCAACAACCGCGTTTTTCGGATCGACTTGCTCGGGAGAGAAGACGG
CGAGCTT
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Coding sequence (CDS) from alignment at H-elongata_contig184997:795..1001+

>mRNA_H-elongata_contig184997.4994.1 ID=mRNA_H-elongata_contig184997.4994.1|Name=mRNA_H-elongata_contig184997.4994.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig184997:795..1001+ (Himanthalia elongata Himel1 dioecious)
AAGGTGCACGACGGCACGTTCGAGTCAGATCCTCATCCCGCCGCCCCCGA
CTGCCTCTACGGGCACGCCCTCCAGTGCAGCACAGCTAGGGTAGCCCTCA
AGGGGCGGGACAAGGTGGAGTTATACCCGGAGTCTCGACACGCCGCGGTG
TTCTCCAACAACCGCGTTTTTCGGATCGACTTGCTCGGGAGAGAAGACGG
CGAGCTTAAGGTGCACGACGGCACGTTCGAGTCAGATCCTCATCCCGCCG
CCCCCGACTGCCTCTACGGGCACGCCCTCCAGTGCAGCACAGCTAGGGTA
GCCCTCAAGGGGCGGGACAAGGTGGAGTTATACCCGGAGTCTCGACACGC
CGCGGTGTTCTCCAACAACCGCGTTTTTCGGATCGACTTGCTCGGGAGAG
AAGACGGCGAGCTT
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