prot_H-elongata_contig100480.49.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig100480.49.1
Unique Nameprot_H-elongata_contig100480.49.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length82
Homology
BLAST of mRNA_H-elongata_contig100480.49.1 vs. uniprot
Match: A0A6H5JWM1_9PHAE (RING-CH-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWM1_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 2.570e-42
Identity = 66/77 (85.71%), Postives = 72/77 (93.51%), Query Frame = 0
Query:    5 QQEPPECRVCRGEPEPDRRLYSPCLCSGSIMHTHEDCLLEWLKHSGKDSCELCGAMFRFTPVYDPDAPQFVPVYQVL 81
            + EPPECRVCRGEPEP RRLY+PCLCSGSIMHTHEDCLLEWL+HSGKD+CELCGA+FRFTPVYDP AP  VP+YQVL
Sbjct:   61 EDEPPECRVCRGEPEPGRRLYAPCLCSGSIMHTHEDCLLEWLQHSGKDTCELCGALFRFTPVYDPGAPTCVPLYQVL 137          
BLAST of mRNA_H-elongata_contig100480.49.1 vs. uniprot
Match: D8LBR1_ECTSI (RING-CH-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBR1_ECTSI)

HSP 1 Score: 154 bits (390), Expect = 6.510e-42
Identity = 66/77 (85.71%), Postives = 72/77 (93.51%), Query Frame = 0
Query:    5 QQEPPECRVCRGEPEPDRRLYSPCLCSGSIMHTHEDCLLEWLKHSGKDSCELCGAMFRFTPVYDPDAPQFVPVYQVL 81
            + EPPECRVCRGEPEP RRLY+PCLCSGSIMHTHEDCLLEWL+HSGKD+CELCGA+FRFTPVYD  APQ VP+YQVL
Sbjct:   61 EDEPPECRVCRGEPEPGRRLYAPCLCSGSIMHTHEDCLLEWLQHSGKDTCELCGALFRFTPVYDAGAPQRVPLYQVL 137          
BLAST of mRNA_H-elongata_contig100480.49.1 vs. uniprot
Match: A0A835YNH4_9STRA (RING-CH-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNH4_9STRA)

HSP 1 Score: 124 bits (310), Expect = 4.070e-31
Identity = 53/71 (74.65%), Postives = 58/71 (81.69%), Query Frame = 0
Query:   10 ECRVCRGEPEPDRRLYSPCLCSGSIMHTHEDCLLEWLKHSGKDSCELCGAMFRFTPVYDPDAPQFVPVYQV 80
            ECRVCRGEPE  RRLY+PCLCSGSIM+ HEDCL +WL HS KDSCELCG  F FTPVY PDAP  +P +QV
Sbjct:   48 ECRVCRGEPELGRRLYAPCLCSGSIMYIHEDCLQQWLAHSKKDSCELCGHTFAFTPVYAPDAPALLPAWQV 118          
BLAST of mRNA_H-elongata_contig100480.49.1 vs. uniprot
Match: A0A7S2RW40_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RW40_9STRA)

HSP 1 Score: 116 bits (291), Expect = 1.490e-28
Identity = 47/73 (64.38%), Postives = 60/73 (82.19%), Query Frame = 0
Query:   10 ECRVCRGEPEPDRRLYSPCLCSGSIMHTHEDCLLEWLKHSGKDSCELCGAMFRFTPVYDPDAPQFVPVYQVLR 82
            ECRVCRG  E  R+L++PCLCSGSIM+ H++CLL+WLKHSGKD CELCG  F+F PVY  DAP  +PV++++R
Sbjct:   16 ECRVCRGPEEEGRKLFAPCLCSGSIMYCHQECLLQWLKHSGKDRCELCGHQFQFNPVYAEDAPTQLPVHRIVR 88          
BLAST of mRNA_H-elongata_contig100480.49.1 vs. uniprot
Match: A0A225X148_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X148_9STRA)

HSP 1 Score: 115 bits (287), Expect = 5.160e-28
Identity = 49/79 (62.03%), Postives = 59/79 (74.68%), Query Frame = 0
Query:    3 LFQQEPPECRVCRGEPEPDRRLYSPCLCSGSIMHTHEDCLLEWLKHSGKDSCELCGAMFRFTPVYDPDAPQFVPVYQVL 81
            L  ++  ECRVCRGE EPDRRL++PC CSGSI  TH DCL +WL+HSGK  CELCG  F FTP+YD DAP  +P  ++L
Sbjct:   18 LDDEDEAECRVCRGEAEPDRRLFAPCKCSGSIRFTHSDCLEQWLEHSGKSFCELCGHEFAFTPLYDADAPDVLPWTELL 96          
BLAST of mRNA_H-elongata_contig100480.49.1 vs. uniprot
Match: D0RMI7_PHYIT (RING-CH-type domain-containing protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0RMI7_PHYIT)

HSP 1 Score: 113 bits (282), Expect = 7.090e-28
Identity = 47/72 (65.28%), Postives = 56/72 (77.78%), Query Frame = 0
Query:   10 ECRVCRGEPEPDRRLYSPCLCSGSIMHTHEDCLLEWLKHSGKDSCELCGAMFRFTPVYDPDAPQFVPVYQVL 81
            ECRVCRGE EPDRRL++PC CSGSI  TH DCL +WL+HSGK  CELCG  F FTP+YD +AP  +P  ++L
Sbjct:   19 ECRVCRGEAEPDRRLFAPCKCSGSIRFTHSDCLEQWLEHSGKSFCELCGHQFTFTPLYDANAPDVLPWTELL 90          
BLAST of mRNA_H-elongata_contig100480.49.1 vs. uniprot
Match: A0A2P4YC57_9STRA (E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YC57_9STRA)

HSP 1 Score: 112 bits (280), Expect = 9.460e-28
Identity = 47/72 (65.28%), Postives = 56/72 (77.78%), Query Frame = 0
Query:   10 ECRVCRGEPEPDRRLYSPCLCSGSIMHTHEDCLLEWLKHSGKDSCELCGAMFRFTPVYDPDAPQFVPVYQVL 81
            ECRVCRGE EPDRRL++PC CSGSI  TH DCL +WL+HSGK  CELCG  F FTP+YD +AP  +P  ++L
Sbjct:   28 ECRVCRGEAEPDRRLFAPCKCSGSIRFTHSDCLEQWLEHSGKSFCELCGHEFTFTPLYDANAPDVLPWTELL 99          
BLAST of mRNA_H-elongata_contig100480.49.1 vs. uniprot
Match: A0A5D6Y1M0_9STRA (RING-CH-type domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y1M0_9STRA)

HSP 1 Score: 113 bits (282), Expect = 2.440e-27
Identity = 47/68 (69.12%), Postives = 53/68 (77.94%), Query Frame = 0
Query:    9 PECRVCRGEPEPDRRLYSPCLCSGSIMHTHEDCLLEWLKHSGKDSCELCGAMFRFTPVYDPDAPQFVP 76
            PECRVCRGE EPDRRL+ PC CSGSI +TH DCL +WL+HSGK  CELCG  F FTP+YD  AP  +P
Sbjct:   56 PECRVCRGEAEPDRRLFEPCKCSGSIRYTHSDCLEQWLEHSGKAFCELCGHKFAFTPLYDAGAPAVLP 123          
BLAST of mRNA_H-elongata_contig100480.49.1 vs. uniprot
Match: A0A0P1AST3_PLAHL (E3 ubiquitin-protein ligase march6 (Membrane-associated ring finger protein 6) n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AST3_PLAHL)

HSP 1 Score: 112 bits (281), Expect = 3.330e-27
Identity = 49/80 (61.25%), Postives = 59/80 (73.75%), Query Frame = 0
Query:    2 DLFQQEPPECRVCRGEPEPDRRLYSPCLCSGSIMHTHEDCLLEWLKHSGKDSCELCGAMFRFTPVYDPDAPQFVPVYQVL 81
            DL   +  ECRVCRGE EPDRRLY+PC CSGSI  TH DCL +WL+HSGK  CELCG  F FTP+Y+ +AP  +P  ++L
Sbjct:   22 DLTDDDEIECRVCRGEAEPDRRLYAPCKCSGSIRFTHSDCLEQWLEHSGKIFCELCGHKFTFTPLYNANAPDVLPWTELL 101          
BLAST of mRNA_H-elongata_contig100480.49.1 vs. uniprot
Match: A0A3M6VPX7_9STRA (RING-CH-type domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VPX7_9STRA)

HSP 1 Score: 112 bits (281), Expect = 3.330e-27
Identity = 47/80 (58.75%), Postives = 61/80 (76.25%), Query Frame = 0
Query:    2 DLFQQEPPECRVCRGEPEPDRRLYSPCLCSGSIMHTHEDCLLEWLKHSGKDSCELCGAMFRFTPVYDPDAPQFVPVYQVL 81
            ++ +++  ECRVCRGE EPDRRL++PC CSGSI +TH DCL +WL HSGK  CELCG  F FTP+YD +AP  +P  ++L
Sbjct:   26 EVEEEDEEECRVCRGEAEPDRRLFAPCKCSGSIRYTHSDCLDQWLTHSGKSFCELCGHEFTFTPLYDANAPDTLPWTELL 105          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100480.49.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JWM1_9PHAE2.570e-4285.71RING-CH-type domain-containing protein n=1 Tax=Ect... [more]
D8LBR1_ECTSI6.510e-4285.71RING-CH-type domain-containing protein n=1 Tax=Ect... [more]
A0A835YNH4_9STRA4.070e-3174.65RING-CH-type domain-containing protein n=1 Tax=Tri... [more]
A0A7S2RW40_9STRA1.490e-2864.38Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A225X148_9STRA5.160e-2862.03E3 ubiquitin-protein ligase n=1 Tax=Phytophthora m... [more]
D0RMI7_PHYIT7.090e-2865.28RING-CH-type domain-containing protein n=1 Tax=Phy... [more]
A0A2P4YC57_9STRA9.460e-2865.28E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Phy... [more]
A0A5D6Y1M0_9STRA2.440e-2769.12RING-CH-type domain-containing protein n=1 Tax=Pyt... [more]
A0A0P1AST3_PLAHL3.330e-2761.25E3 ubiquitin-protein ligase march6 (Membrane-assoc... [more]
A0A3M6VPX7_9STRA3.330e-2758.75RING-CH-type domain-containing protein n=2 Tax=Per... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011016Zinc finger, RING-CH-typeSMARTSM00744ringv_2coord: 10..58
e-value: 2.4E-15
score: 67.0
IPR011016Zinc finger, RING-CH-typePFAMPF12906RINGvcoord: 11..57
e-value: 1.3E-13
score: 50.9
IPR011016Zinc finger, RING-CH-typePROSITEPS51292ZF_RING_CHcoord: 3..64
score: 19.403
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 2..69
e-value: 1.5E-20
score: 74.6
NoneNo IPR availablePANTHERPTHR13145SSM4 PROTEINcoord: 5..81
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 7..62

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100480contigH-elongata_contig100480:1069..1897 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100480.49.1mRNA_H-elongata_contig100480.49.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig100480 1069..1897 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig100480.49.1 ID=prot_H-elongata_contig100480.49.1|Name=mRNA_H-elongata_contig100480.49.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=82bp
IDLFQQEPPECRVCRGEPEPDRRLYSPCLCSGSIMHTHEDCLLEWLKHSG
KDSCELCGAMFRFTPVYDPDAPQFVPVYQVLR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011016Znf_RING-CH
IPR013083Znf_RING/FYVE/PHD