mRNA_H-elongata_contig100480.49.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig100480.49.1 vs. uniprot
Match: A0A6H5JWM1_9PHAE (RING-CH-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWM1_9PHAE) HSP 1 Score: 155 bits (393), Expect = 2.570e-42 Identity = 66/77 (85.71%), Postives = 72/77 (93.51%), Query Frame = 1 Query: 13 QQEPPECRVCRGEPEPDRRLYSPCLCSGSIMHTHEDCLLEWLKHSGKDSCELCGAMFRFTPVYDPDAPQFVPVYQVL 243 + EPPECRVCRGEPEP RRLY+PCLCSGSIMHTHEDCLLEWL+HSGKD+CELCGA+FRFTPVYDP AP VP+YQVL Sbjct: 61 EDEPPECRVCRGEPEPGRRLYAPCLCSGSIMHTHEDCLLEWLQHSGKDTCELCGALFRFTPVYDPGAPTCVPLYQVL 137
BLAST of mRNA_H-elongata_contig100480.49.1 vs. uniprot
Match: D8LBR1_ECTSI (RING-CH-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBR1_ECTSI) HSP 1 Score: 154 bits (390), Expect = 6.510e-42 Identity = 66/77 (85.71%), Postives = 72/77 (93.51%), Query Frame = 1 Query: 13 QQEPPECRVCRGEPEPDRRLYSPCLCSGSIMHTHEDCLLEWLKHSGKDSCELCGAMFRFTPVYDPDAPQFVPVYQVL 243 + EPPECRVCRGEPEP RRLY+PCLCSGSIMHTHEDCLLEWL+HSGKD+CELCGA+FRFTPVYD APQ VP+YQVL Sbjct: 61 EDEPPECRVCRGEPEPGRRLYAPCLCSGSIMHTHEDCLLEWLQHSGKDTCELCGALFRFTPVYDAGAPQRVPLYQVL 137
BLAST of mRNA_H-elongata_contig100480.49.1 vs. uniprot
Match: A0A835YNH4_9STRA (RING-CH-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNH4_9STRA) HSP 1 Score: 124 bits (310), Expect = 4.070e-31 Identity = 53/71 (74.65%), Postives = 58/71 (81.69%), Query Frame = 1 Query: 28 ECRVCRGEPEPDRRLYSPCLCSGSIMHTHEDCLLEWLKHSGKDSCELCGAMFRFTPVYDPDAPQFVPVYQV 240 ECRVCRGEPE RRLY+PCLCSGSIM+ HEDCL +WL HS KDSCELCG F FTPVY PDAP +P +QV Sbjct: 48 ECRVCRGEPELGRRLYAPCLCSGSIMYIHEDCLQQWLAHSKKDSCELCGHTFAFTPVYAPDAPALLPAWQV 118
BLAST of mRNA_H-elongata_contig100480.49.1 vs. uniprot
Match: A0A7S2RW40_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RW40_9STRA) HSP 1 Score: 116 bits (291), Expect = 1.490e-28 Identity = 47/73 (64.38%), Postives = 60/73 (82.19%), Query Frame = 1 Query: 28 ECRVCRGEPEPDRRLYSPCLCSGSIMHTHEDCLLEWLKHSGKDSCELCGAMFRFTPVYDPDAPQFVPVYQVLR 246 ECRVCRG E R+L++PCLCSGSIM+ H++CLL+WLKHSGKD CELCG F+F PVY DAP +PV++++R Sbjct: 16 ECRVCRGPEEEGRKLFAPCLCSGSIMYCHQECLLQWLKHSGKDRCELCGHQFQFNPVYAEDAPTQLPVHRIVR 88
BLAST of mRNA_H-elongata_contig100480.49.1 vs. uniprot
Match: A0A225X148_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X148_9STRA) HSP 1 Score: 115 bits (287), Expect = 5.160e-28 Identity = 49/79 (62.03%), Postives = 59/79 (74.68%), Query Frame = 1 Query: 7 LFQQEPPECRVCRGEPEPDRRLYSPCLCSGSIMHTHEDCLLEWLKHSGKDSCELCGAMFRFTPVYDPDAPQFVPVYQVL 243 L ++ ECRVCRGE EPDRRL++PC CSGSI TH DCL +WL+HSGK CELCG F FTP+YD DAP +P ++L Sbjct: 18 LDDEDEAECRVCRGEAEPDRRLFAPCKCSGSIRFTHSDCLEQWLEHSGKSFCELCGHEFAFTPLYDADAPDVLPWTELL 96
BLAST of mRNA_H-elongata_contig100480.49.1 vs. uniprot
Match: D0RMI7_PHYIT (RING-CH-type domain-containing protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0RMI7_PHYIT) HSP 1 Score: 113 bits (282), Expect = 7.090e-28 Identity = 47/72 (65.28%), Postives = 56/72 (77.78%), Query Frame = 1 Query: 28 ECRVCRGEPEPDRRLYSPCLCSGSIMHTHEDCLLEWLKHSGKDSCELCGAMFRFTPVYDPDAPQFVPVYQVL 243 ECRVCRGE EPDRRL++PC CSGSI TH DCL +WL+HSGK CELCG F FTP+YD +AP +P ++L Sbjct: 19 ECRVCRGEAEPDRRLFAPCKCSGSIRFTHSDCLEQWLEHSGKSFCELCGHQFTFTPLYDANAPDVLPWTELL 90
BLAST of mRNA_H-elongata_contig100480.49.1 vs. uniprot
Match: A0A2P4YC57_9STRA (E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YC57_9STRA) HSP 1 Score: 112 bits (280), Expect = 9.460e-28 Identity = 47/72 (65.28%), Postives = 56/72 (77.78%), Query Frame = 1 Query: 28 ECRVCRGEPEPDRRLYSPCLCSGSIMHTHEDCLLEWLKHSGKDSCELCGAMFRFTPVYDPDAPQFVPVYQVL 243 ECRVCRGE EPDRRL++PC CSGSI TH DCL +WL+HSGK CELCG F FTP+YD +AP +P ++L Sbjct: 28 ECRVCRGEAEPDRRLFAPCKCSGSIRFTHSDCLEQWLEHSGKSFCELCGHEFTFTPLYDANAPDVLPWTELL 99
BLAST of mRNA_H-elongata_contig100480.49.1 vs. uniprot
Match: A0A5D6Y1M0_9STRA (RING-CH-type domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y1M0_9STRA) HSP 1 Score: 113 bits (282), Expect = 2.440e-27 Identity = 47/68 (69.12%), Postives = 53/68 (77.94%), Query Frame = 1 Query: 25 PECRVCRGEPEPDRRLYSPCLCSGSIMHTHEDCLLEWLKHSGKDSCELCGAMFRFTPVYDPDAPQFVP 228 PECRVCRGE EPDRRL+ PC CSGSI +TH DCL +WL+HSGK CELCG F FTP+YD AP +P Sbjct: 56 PECRVCRGEAEPDRRLFEPCKCSGSIRYTHSDCLEQWLEHSGKAFCELCGHKFAFTPLYDAGAPAVLP 123
BLAST of mRNA_H-elongata_contig100480.49.1 vs. uniprot
Match: A0A0P1AST3_PLAHL (E3 ubiquitin-protein ligase march6 (Membrane-associated ring finger protein 6) n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AST3_PLAHL) HSP 1 Score: 112 bits (281), Expect = 3.330e-27 Identity = 49/80 (61.25%), Postives = 59/80 (73.75%), Query Frame = 1 Query: 4 DLFQQEPPECRVCRGEPEPDRRLYSPCLCSGSIMHTHEDCLLEWLKHSGKDSCELCGAMFRFTPVYDPDAPQFVPVYQVL 243 DL + ECRVCRGE EPDRRLY+PC CSGSI TH DCL +WL+HSGK CELCG F FTP+Y+ +AP +P ++L Sbjct: 22 DLTDDDEIECRVCRGEAEPDRRLYAPCKCSGSIRFTHSDCLEQWLEHSGKIFCELCGHKFTFTPLYNANAPDVLPWTELL 101
BLAST of mRNA_H-elongata_contig100480.49.1 vs. uniprot
Match: A0A3M6VPX7_9STRA (RING-CH-type domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VPX7_9STRA) HSP 1 Score: 112 bits (281), Expect = 3.330e-27 Identity = 47/80 (58.75%), Postives = 61/80 (76.25%), Query Frame = 1 Query: 4 DLFQQEPPECRVCRGEPEPDRRLYSPCLCSGSIMHTHEDCLLEWLKHSGKDSCELCGAMFRFTPVYDPDAPQFVPVYQVL 243 ++ +++ ECRVCRGE EPDRRL++PC CSGSI +TH DCL +WL HSGK CELCG F FTP+YD +AP +P ++L Sbjct: 26 EVEEEDEEECRVCRGEAEPDRRLFAPCKCSGSIRYTHSDCLDQWLTHSGKSFCELCGHEFTFTPLYDANAPDTLPWTELL 105 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100480.49.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig100480.49.1 >prot_H-elongata_contig100480.49.1 ID=prot_H-elongata_contig100480.49.1|Name=mRNA_H-elongata_contig100480.49.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=82bp IDLFQQEPPECRVCRGEPEPDRRLYSPCLCSGSIMHTHEDCLLEWLKHSGback to top mRNA from alignment at H-elongata_contig100480:1069..1897+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig100480.49.1 ID=mRNA_H-elongata_contig100480.49.1|Name=mRNA_H-elongata_contig100480.49.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=829bp|location=Sequence derived from alignment at H-elongata_contig100480:1069..1897+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig100480:1069..1897+ >mRNA_H-elongata_contig100480.49.1 ID=mRNA_H-elongata_contig100480.49.1|Name=mRNA_H-elongata_contig100480.49.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=492bp|location=Sequence derived from alignment at H-elongata_contig100480:1069..1897+ (Himanthalia elongata Himel1 dioecious)back to top |