mRNA_H-elongata_contig183708.4941.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig183708.4941.1
Unique NamemRNA_H-elongata_contig183708.4941.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig183708.4941.1 vs. uniprot
Match: UPI001AD8DC38 (uncharacterized protein LOC121052952 isoform X1 n=1 Tax=Rosa chinensis TaxID=74649 RepID=UPI001AD8DC38)

HSP 1 Score: 58.2 bits (139), Expect = 1.190e-7
Identity = 37/85 (43.53%), Postives = 51/85 (60.00%), Query Frame = 1
Query:   16 VGEEPWILDSGATGHFTPDGSRLAGYAE--CSKVLRGAGGEAFPIVGTGSLTLCVRSEGGVVRVKLNDVAHVLGLSHHLLSLRRI 264
            VGE+ WI+DSGA+ H T D S     +    SKV   A GEAFP++GTGS+ L    E       L++V +V  LSHHL+S+ ++
Sbjct:  348 VGEDTWIIDSGASDHMTYDKSYFTHLSPPPVSKVTN-ANGEAFPVLGTGSVRLTPTLE-------LHNVLYVPALSHHLISVPQL 424          
BLAST of mRNA_H-elongata_contig183708.4941.1 vs. uniprot
Match: A0A2P6Q6A6_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6Q6A6_ROSCH)

HSP 1 Score: 53.1 bits (126), Expect = 7.360e-6
Identity = 31/84 (36.90%), Postives = 48/84 (57.14%), Query Frame = 1
Query:   16 VGEEPWILDSGATGHFTPDGSRLAGYAE-CSKVLRGAGGEAFPIVGTGSLTLCVRSEGGVVRVKLNDVAHVLGLSHHLLSLRRI 264
            VG + WI+DSGA+ H T D S     +      +  A GEAFP++G+GS+ +    E       L++V +V  LSHHL+S+ ++
Sbjct:    9 VGSDTWIIDSGASDHMTYDKSYFTDLSSPLVSYVTNANGEAFPVLGSGSVCITPTLE-------LHNVLYVPDLSHHLISVPQL 85          
BLAST of mRNA_H-elongata_contig183708.4941.1 vs. uniprot
Match: A0A2P6R6I2_ROSCH (Putative RNA-directed DNA polymerase n=3 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6R6I2_ROSCH)

HSP 1 Score: 53.1 bits (126), Expect = 7.440e-6
Identity = 32/87 (36.78%), Postives = 51/87 (58.62%), Query Frame = 1
Query:   16 VGEEPWILDSGATGHFTPDGSRLAGYAECSK----VLRGAGGEAFPIVGTGSLTLCVRSEGGVVRVKLNDVAHVLGLSHHLLSLRRI 264
            VG + WI+DSGA+ H T D +    + E S      +  A GEAFP++GTGS+ +          ++L++V +V  LSHHL+S+ ++
Sbjct:  115 VGSDTWIIDSGASDHMTYDKTY---FTELSSPPVSYVTNANGEAFPVLGTGSIRI-------TPTLQLHNVLYVPDLSHHLISVPQL 191          
BLAST of mRNA_H-elongata_contig183708.4941.1 vs. uniprot
Match: A0A2P6PGT1_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6PGT1_ROSCH)

HSP 1 Score: 52.8 bits (125), Expect = 9.470e-6
Identity = 31/84 (36.90%), Postives = 48/84 (57.14%), Query Frame = 1
Query:   16 VGEEPWILDSGATGHFTPDGSRLAGYAECS-KVLRGAGGEAFPIVGTGSLTLCVRSEGGVVRVKLNDVAHVLGLSHHLLSLRRI 264
            VG + WI+DSGA+ H T D S     +      +  A GEAFP++G+GS+ +    E       L++V +V  LSHHL+S+ ++
Sbjct:   47 VGSDTWIIDSGASDHMTYDKSYFTDLSSPPVSYVTNANGEAFPVLGSGSVRITPTLE-------LHNVLYVPDLSHHLISVPQL 123          
BLAST of mRNA_H-elongata_contig183708.4941.1 vs. uniprot
Match: A0A2P6RT72_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6RT72_ROSCH)

HSP 1 Score: 52.4 bits (124), Expect = 1.370e-5
Identity = 31/84 (36.90%), Postives = 48/84 (57.14%), Query Frame = 1
Query:   16 VGEEPWILDSGATGHFTPDGSRLAGYAECS-KVLRGAGGEAFPIVGTGSLTLCVRSEGGVVRVKLNDVAHVLGLSHHLLSLRRI 264
            VG + WI+DSGA+ H T D S     +      +  A GEAFP++G+GS+ +    E       L++V +V  LSHHL+S+ ++
Sbjct:   44 VGSDTWIIDSGASDHMTYDKSYFTDLSSPPVSYVTNANGEAFPVLGSGSVRVTPTLE-------LHNVLYVPDLSHHLISVPQL 120          
BLAST of mRNA_H-elongata_contig183708.4941.1 vs. uniprot
Match: A0A2P6SHX0_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6SHX0_ROSCH)

HSP 1 Score: 52.0 bits (123), Expect = 1.770e-5
Identity = 33/87 (37.93%), Postives = 50/87 (57.47%), Query Frame = 1
Query:   16 VGEEPWILDSGATGHFTPDGSRLAGYAECS----KVLRGAGGEAFPIVGTGSLTLCVRSEGGVVRVKLNDVAHVLGLSHHLLSLRRI 264
            VG + WI+DSGA+ H T D S    + E S      +  A GEAFP++G+GS+ +    E       L++V +V  LSHHL+S+ ++
Sbjct:    9 VGSDTWIIDSGASDHMTYDKSF---FTELSPPPVSYVTNANGEAFPVLGSGSVRITPTLE-------LHNVLYVPDLSHHLISVPQL 85          
BLAST of mRNA_H-elongata_contig183708.4941.1 vs. uniprot
Match: A0A535F6U2_9CHLR (DDE-type integrase/transposase/recombinase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535F6U2_9CHLR)

HSP 1 Score: 52.0 bits (123), Expect = 1.900e-5
Identity = 33/76 (43.42%), Postives = 43/76 (56.58%), Query Frame = 1
Query:   31 WILDSGATGHFTPDGSRLAGYAECSKVLR--GAGGEAFPIVGTGSLTLCVRSEGGVVRVKLNDVAHVLGLSHHLLS 252
            WILDSGA+ HFTP    L  Y    K +    A G+ F I GTG++ L V  +GG   + L+ V HV G+  +LLS
Sbjct:  306 WILDSGASEHFTPYKHVLIDYKTLDKPVEVNTAKGKLFGI-GTGNVHLTVEGQGGFTPITLHKVLHVPGMDSNLLS 380          
BLAST of mRNA_H-elongata_contig183708.4941.1 vs. uniprot
Match: A0A5D3DSP6_CUCME (Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 n=2 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3DSP6_CUCME)

HSP 1 Score: 51.2 bits (121), Expect = 3.480e-5
Identity = 34/89 (38.20%), Postives = 45/89 (50.56%), Query Frame = 1
Query:   19 GEEPWILDSGATGHFTPDGSRLAGYAECS--KVLRGAGGEAFPIVGTGSLTLCVRSEGGVVRVKLNDVAHVLGLSHHLLSLRRIADAGH 279
            G  PWILDSGAT HFT        Y  C+  + ++ A G   PI G G + L    +G      L +V HV  LS++LLS+ +I    H
Sbjct:  258 GTNPWILDSGATDHFTSFSEHFVTYTSCAGNEKIQIADGSLAPIAGKGQIVLF---DG----FSLQNVLHVPKLSYNLLSISKITRELH 339          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig183708.4941.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
UPI001AD8DC381.190e-743.53uncharacterized protein LOC121052952 isoform X1 n=... [more]
A0A2P6Q6A6_ROSCH7.360e-636.90Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
A0A2P6R6I2_ROSCH7.440e-636.78Putative RNA-directed DNA polymerase n=3 Tax=Rosa ... [more]
A0A2P6PGT1_ROSCH9.470e-636.90Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
A0A2P6RT72_ROSCH1.370e-536.90Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
A0A2P6SHX0_ROSCH1.770e-537.93Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
A0A535F6U2_9CHLR1.900e-543.42DDE-type integrase/transposase/recombinase n=1 Tax... [more]
A0A5D3DSP6_CUCME3.480e-538.20Cysteine-rich RLK (RECEPTOR-like protein kinase) 8... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig183708contigH-elongata_contig183708:301..615 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size315
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930053.769395-CDS-H-elongata_contig183708:300..6151622930053.769395-CDS-H-elongata_contig183708:300..615Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig183708 301..615 -
1691679262.7573926-CDS-H-elongata_contig183708:300..6151691679262.7573926-CDS-H-elongata_contig183708:300..615Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig183708 301..615 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig183708.4941.1prot_H-elongata_contig183708.4941.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig183708 301..615 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig183708.4941.1

>prot_H-elongata_contig183708.4941.1 ID=prot_H-elongata_contig183708.4941.1|Name=mRNA_H-elongata_contig183708.4941.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp
GEQSRVGEEPWILDSGATGHFTPDGSRLAGYAECSKVLRGAGGEAFPIVG
TGSLTLCVRSEGGVVRVKLNDVAHVLGLSHHLLSLRRIADAGHTYIDRPE
GILVK
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mRNA from alignment at H-elongata_contig183708:301..615-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig183708.4941.1 ID=mRNA_H-elongata_contig183708.4941.1|Name=mRNA_H-elongata_contig183708.4941.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=315bp|location=Sequence derived from alignment at H-elongata_contig183708:301..615- (Himanthalia elongata Himel1 dioecious)
GGCGAACAGTCGCGCGTGGGGGAAGAACCCTGGATACTGGATTCGGGGGC TACAGGTCATTTTACGCCTGACGGCAGCAGACTTGCCGGCTACGCGGAGT GCAGCAAAGTGTTGCGTGGCGCGGGAGGCGAGGCTTTCCCGATAGTAGGC ACTGGCTCTTTGACTTTGTGCGTCCGATCCGAGGGAGGGGTGGTCCGCGT CAAACTAAACGACGTTGCACACGTGCTAGGCCTCTCTCACCACCTGTTGT CTTTGCGACGGATTGCCGATGCTGGCCACACGTATATCGACCGACCAGAG GGGATCTTGGTCAAA
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Coding sequence (CDS) from alignment at H-elongata_contig183708:301..615-

>mRNA_H-elongata_contig183708.4941.1 ID=mRNA_H-elongata_contig183708.4941.1|Name=mRNA_H-elongata_contig183708.4941.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig183708:301..615- (Himanthalia elongata Himel1 dioecious)
GGCGAACAGTCGCGCGTGGGGGAAGAACCCTGGATACTGGATTCGGGGGC
TACAGGTCATTTTACGCCTGACGGCAGCAGACTTGCCGGCTACGCGGAGT
GCAGCAAAGTGTTGCGTGGCGCGGGAGGCGAGGCTTTCCCGATAGTAGGC
ACTGGCTCTTTGACTTTGTGCGTCCGATCCGAGGGAGGGGTGGTCCGCGT
CAAACTAAACGACGTTGCACACGTGCTAGGCCTCTCTCACCACCTGTTGT
CTTTGCGACGGATTGCCGATGCTGGCCACACGTATATCGACCGACCAGAG
GGGATCTTGGTCAAAGGCGAACAGTCGCGCGTGGGGGAAGAACCCTGGAT
ACTGGATTCGGGGGCTACAGGTCATTTTACGCCTGACGGCAGCAGACTTG
CCGGCTACGCGGAGTGCAGCAAAGTGTTGCGTGGCGCGGGAGGCGAGGCT
TTCCCGATAGTAGGCACTGGCTCTTTGACTTTGTGCGTCCGATCCGAGGG
AGGGGTGGTCCGCGTCAAACTAAACGACGTTGCACACGTGCTAGGCCTCT
CTCACCACCTGTTGTCTTTGCGACGGATTGCCGATGCTGGCCACACGTAT
ATCGACCGACCAGAGGGGATCTTGGTCAAA
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