mRNA_H-elongata_contig183708.4941.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig183708.4941.1 vs. uniprot
Match: UPI001AD8DC38 (uncharacterized protein LOC121052952 isoform X1 n=1 Tax=Rosa chinensis TaxID=74649 RepID=UPI001AD8DC38) HSP 1 Score: 58.2 bits (139), Expect = 1.190e-7 Identity = 37/85 (43.53%), Postives = 51/85 (60.00%), Query Frame = 1
Query: 16 VGEEPWILDSGATGHFTPDGSRLAGYAE--CSKVLRGAGGEAFPIVGTGSLTLCVRSEGGVVRVKLNDVAHVLGLSHHLLSLRRI 264
VGE+ WI+DSGA+ H T D S + SKV A GEAFP++GTGS+ L E L++V +V LSHHL+S+ ++
Sbjct: 348 VGEDTWIIDSGASDHMTYDKSYFTHLSPPPVSKVTN-ANGEAFPVLGTGSVRLTPTLE-------LHNVLYVPALSHHLISVPQL 424
BLAST of mRNA_H-elongata_contig183708.4941.1 vs. uniprot
Match: A0A2P6Q6A6_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6Q6A6_ROSCH) HSP 1 Score: 53.1 bits (126), Expect = 7.360e-6 Identity = 31/84 (36.90%), Postives = 48/84 (57.14%), Query Frame = 1
Query: 16 VGEEPWILDSGATGHFTPDGSRLAGYAE-CSKVLRGAGGEAFPIVGTGSLTLCVRSEGGVVRVKLNDVAHVLGLSHHLLSLRRI 264
VG + WI+DSGA+ H T D S + + A GEAFP++G+GS+ + E L++V +V LSHHL+S+ ++
Sbjct: 9 VGSDTWIIDSGASDHMTYDKSYFTDLSSPLVSYVTNANGEAFPVLGSGSVCITPTLE-------LHNVLYVPDLSHHLISVPQL 85
BLAST of mRNA_H-elongata_contig183708.4941.1 vs. uniprot
Match: A0A2P6R6I2_ROSCH (Putative RNA-directed DNA polymerase n=3 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6R6I2_ROSCH) HSP 1 Score: 53.1 bits (126), Expect = 7.440e-6 Identity = 32/87 (36.78%), Postives = 51/87 (58.62%), Query Frame = 1
Query: 16 VGEEPWILDSGATGHFTPDGSRLAGYAECSK----VLRGAGGEAFPIVGTGSLTLCVRSEGGVVRVKLNDVAHVLGLSHHLLSLRRI 264
VG + WI+DSGA+ H T D + + E S + A GEAFP++GTGS+ + ++L++V +V LSHHL+S+ ++
Sbjct: 115 VGSDTWIIDSGASDHMTYDKTY---FTELSSPPVSYVTNANGEAFPVLGTGSIRI-------TPTLQLHNVLYVPDLSHHLISVPQL 191
BLAST of mRNA_H-elongata_contig183708.4941.1 vs. uniprot
Match: A0A2P6PGT1_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6PGT1_ROSCH) HSP 1 Score: 52.8 bits (125), Expect = 9.470e-6 Identity = 31/84 (36.90%), Postives = 48/84 (57.14%), Query Frame = 1
Query: 16 VGEEPWILDSGATGHFTPDGSRLAGYAECS-KVLRGAGGEAFPIVGTGSLTLCVRSEGGVVRVKLNDVAHVLGLSHHLLSLRRI 264
VG + WI+DSGA+ H T D S + + A GEAFP++G+GS+ + E L++V +V LSHHL+S+ ++
Sbjct: 47 VGSDTWIIDSGASDHMTYDKSYFTDLSSPPVSYVTNANGEAFPVLGSGSVRITPTLE-------LHNVLYVPDLSHHLISVPQL 123
BLAST of mRNA_H-elongata_contig183708.4941.1 vs. uniprot
Match: A0A2P6RT72_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6RT72_ROSCH) HSP 1 Score: 52.4 bits (124), Expect = 1.370e-5 Identity = 31/84 (36.90%), Postives = 48/84 (57.14%), Query Frame = 1
Query: 16 VGEEPWILDSGATGHFTPDGSRLAGYAECS-KVLRGAGGEAFPIVGTGSLTLCVRSEGGVVRVKLNDVAHVLGLSHHLLSLRRI 264
VG + WI+DSGA+ H T D S + + A GEAFP++G+GS+ + E L++V +V LSHHL+S+ ++
Sbjct: 44 VGSDTWIIDSGASDHMTYDKSYFTDLSSPPVSYVTNANGEAFPVLGSGSVRVTPTLE-------LHNVLYVPDLSHHLISVPQL 120
BLAST of mRNA_H-elongata_contig183708.4941.1 vs. uniprot
Match: A0A2P6SHX0_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6SHX0_ROSCH) HSP 1 Score: 52.0 bits (123), Expect = 1.770e-5 Identity = 33/87 (37.93%), Postives = 50/87 (57.47%), Query Frame = 1
Query: 16 VGEEPWILDSGATGHFTPDGSRLAGYAECS----KVLRGAGGEAFPIVGTGSLTLCVRSEGGVVRVKLNDVAHVLGLSHHLLSLRRI 264
VG + WI+DSGA+ H T D S + E S + A GEAFP++G+GS+ + E L++V +V LSHHL+S+ ++
Sbjct: 9 VGSDTWIIDSGASDHMTYDKSF---FTELSPPPVSYVTNANGEAFPVLGSGSVRITPTLE-------LHNVLYVPDLSHHLISVPQL 85
BLAST of mRNA_H-elongata_contig183708.4941.1 vs. uniprot
Match: A0A535F6U2_9CHLR (DDE-type integrase/transposase/recombinase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535F6U2_9CHLR) HSP 1 Score: 52.0 bits (123), Expect = 1.900e-5 Identity = 33/76 (43.42%), Postives = 43/76 (56.58%), Query Frame = 1
Query: 31 WILDSGATGHFTPDGSRLAGYAECSKVLR--GAGGEAFPIVGTGSLTLCVRSEGGVVRVKLNDVAHVLGLSHHLLS 252
WILDSGA+ HFTP L Y K + A G+ F I GTG++ L V +GG + L+ V HV G+ +LLS
Sbjct: 306 WILDSGASEHFTPYKHVLIDYKTLDKPVEVNTAKGKLFGI-GTGNVHLTVEGQGGFTPITLHKVLHVPGMDSNLLS 380
BLAST of mRNA_H-elongata_contig183708.4941.1 vs. uniprot
Match: A0A5D3DSP6_CUCME (Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 n=2 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3DSP6_CUCME) HSP 1 Score: 51.2 bits (121), Expect = 3.480e-5 Identity = 34/89 (38.20%), Postives = 45/89 (50.56%), Query Frame = 1
Query: 19 GEEPWILDSGATGHFTPDGSRLAGYAECS--KVLRGAGGEAFPIVGTGSLTLCVRSEGGVVRVKLNDVAHVLGLSHHLLSLRRIADAGH 279
G PWILDSGAT HFT Y C+ + ++ A G PI G G + L +G L +V HV LS++LLS+ +I H
Sbjct: 258 GTNPWILDSGATDHFTSFSEHFVTYTSCAGNEKIQIADGSLAPIAGKGQIVLF---DG----FSLQNVLHVPKLSYNLLSISKITRELH 339 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig183708.4941.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig183708.4941.1 >prot_H-elongata_contig183708.4941.1 ID=prot_H-elongata_contig183708.4941.1|Name=mRNA_H-elongata_contig183708.4941.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp GEQSRVGEEPWILDSGATGHFTPDGSRLAGYAECSKVLRGAGGEAFPIVGback to top mRNA from alignment at H-elongata_contig183708:301..615- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig183708.4941.1 ID=mRNA_H-elongata_contig183708.4941.1|Name=mRNA_H-elongata_contig183708.4941.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=315bp|location=Sequence derived from alignment at H-elongata_contig183708:301..615- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig183708:301..615- >mRNA_H-elongata_contig183708.4941.1 ID=mRNA_H-elongata_contig183708.4941.1|Name=mRNA_H-elongata_contig183708.4941.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig183708:301..615- (Himanthalia elongata Himel1 dioecious)back to top |