mRNA_H-elongata_contig18339.4930.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18339.4930.1
Unique NamemRNA_H-elongata_contig18339.4930.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig18339.4930.1 vs. uniprot
Match: A0A835Z5G8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5G8_9STRA)

HSP 1 Score: 155 bits (392), Expect = 3.210e-44
Identity = 79/136 (58.09%), Postives = 95/136 (69.85%), Query Frame = 1
Query:   28 QDLQFTRMFTTVKPRPFPASTYLLFTARDGMTVAASFNMPDPASKYLQKWLGMSKKTADVTAQLACPAGIQLFSNPLNLLGMDLYNNPNSSAAARGKLIVSEYTSSMILRVSRTGPAFGIGGVGNTAFRKYFASLF 435
            +D  FTRMF +  P   P STY LFT RD  TV ASFN+P P S++LQ   GMSK  AD TAQ+ACPA +Q  S PL+L+G+DLYNNP S+A  R   + S+YTSS+  R+ R GPAFGIGGVGNTAFRK   + F
Sbjct:  143 KDRAFTRMFGSSAPMALPLSTYALFTIRDAGTVGASFNLPGPVSEWLQAQ-GMSKARADFTAQMACPAAVQFLSTPLHLIGLDLYNNPKSTARDRWTFMCSKYTSSVAARIGRIGPAFGIGGVGNTAFRKGLRARF 277          
BLAST of mRNA_H-elongata_contig18339.4930.1 vs. uniprot
Match: A0A261XX22_9FUNG (Uncharacterized protein n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261XX22_9FUNG)

HSP 1 Score: 139 bits (350), Expect = 1.770e-38
Identity = 72/130 (55.38%), Postives = 84/130 (64.62%), Query Frame = 1
Query:   28 QDLQFTRMFTTVKPRPFPASTYLLFTARDGMTVAASFNMPDPASKYLQKWLGMSKKTADVTAQLACPAGIQLFSNPLNLLGMDLYNNPNSSAAARGKLIVSEYTSSMILRVSRTGPAFGIGGVGNTAFRK 417
            +D  FTRMF TV    FP  +Y LF ARD +TVAASFN P   S YLQK    +K TAD+ AQL CPA +Q  S PL+LLG+DLYN  N   + R  LI  EY  S + R++R GPAFGIGGVGNT  R 
Sbjct:   91 KDRAFTRMFGTVASHSFPLPSYALFAARDSLTVAASFNAPQLVSHYLQKHNISTKHTADIVAQLGCPALVQFVSTPLHLLGLDLYNRSNMKLSDRAGLIRREYLKSTLARIARIGPAFGIGGVGNTLLRS 220          
BLAST of mRNA_H-elongata_contig18339.4930.1 vs. uniprot
Match: A0A8H7S7R9_9FUNG (Uncharacterized protein n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7S7R9_9FUNG)

HSP 1 Score: 139 bits (349), Expect = 5.090e-38
Identity = 72/131 (54.96%), Postives = 87/131 (66.41%), Query Frame = 1
Query:   28 QDLQFTRMFTTVKPRPFPASTYLLFTARDGMTVAASFNMPDPASKYLQKWLGMSKKTADVTAQLACPAGIQLFSNPLNLLGMDLYNNPNSSAAARGKLIVSEYTSSMILRVSRTGPAFGIGGVGNTAFRKY 420
            +D  FTRMF     R  P  TYL F ARD MTVAASFN P   + +LQ+   M ++ + VTAQLACPA IQ  S P++LLG+DLYN PN+++  R  LI  EY  S + RV R GPAFGIGGVGNT FR +
Sbjct:  124 KDRTFTRMFGVTTTRALPKFTYLCFAARDSMTVAASFNAPTYFASWLQENYSMDQRNSKVTAQLACPALIQFISTPIHLLGLDLYNRPNATSNQRVGLIRKEYFKSALARVGRIGPAFGIGGVGNTYFRGF 254          
BLAST of mRNA_H-elongata_contig18339.4930.1 vs. uniprot
Match: A0A8H7U8D9_MORIS (Uncharacterized protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7U8D9_MORIS)

HSP 1 Score: 137 bits (345), Expect = 3.420e-37
Identity = 71/132 (53.79%), Postives = 89/132 (67.42%), Query Frame = 1
Query:   28 QDLQFTRMFTTVKPRPFPASTYLLFTARDGMTVAASFNMPDPASKYLQ-KWLGMSKKTADVTAQLACPAGIQLFSNPLNLLGMDLYNNPNSSAAARGKLIVSEYTSSMILRVSRTGPAFGIGGVGNTAFRKY 420
            +D  FTRMF TV  +P P  +YLLF +RD +T+ +SFN P   SKY+Q + +  S K +D  AQLACPA +Q  S PL+LLG+DLYNN NSS+  R  LI  EY  S++ RV+R  PAFGIGGVGN   R Y
Sbjct:  140 KDRAFTRMFGTVASKPLPLFSYLLFASRDSLTILSSFNAPPIVSKYIQTEGILNSSKMSDTIAQLACPAVMQFISTPLHLLGLDLYNNSNSSSGQRLSLIRREYVKSVLARVARIAPAFGIGGVGNNYVRSY 271          
BLAST of mRNA_H-elongata_contig18339.4930.1 vs. uniprot
Match: A0A8H7PPD2_9FUNG (Uncharacterized protein n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7PPD2_9FUNG)

HSP 1 Score: 134 bits (338), Expect = 3.720e-36
Identity = 69/132 (52.27%), Postives = 90/132 (68.18%), Query Frame = 1
Query:   28 QDLQFTRMFTTVKPRPFPASTYLLFTARDGMTVAASFNMPDPASKYLQ-KWLGMSKKTADVTAQLACPAGIQLFSNPLNLLGMDLYNNPNSSAAARGKLIVSEYTSSMILRVSRTGPAFGIGGVGNTAFRKY 420
            +D  FTRMF TV  +P PA +YLLF ARD +T+AASFN P   S+++Q + +  S K +D  +Q+ACPA +Q+ S PL+LLG+DLYNN +S+   R  LI  EY  S++ RV R  PAFGIGGVGN   R Y
Sbjct:  139 KDRAFTRMFGTVATKPLPALSYLLFAARDSLTIAASFNAPPIVSQWIQTEGILNSTKASDTLSQIACPALMQVLSTPLHLLGLDLYNNSSSTTGQRFSLIRREYVKSVLARVGRIAPAFGIGGVGNNYVRSY 270          
BLAST of mRNA_H-elongata_contig18339.4930.1 vs. uniprot
Match: A0A433PI02_9FUNG (Uncharacterized protein n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PI02_9FUNG)

HSP 1 Score: 135 bits (340), Expect = 4.300e-36
Identity = 69/130 (53.08%), Postives = 87/130 (66.92%), Query Frame = 1
Query:   28 QDLQFTRMFTTVKPRPFPASTYLLFTARDGMTVAASFNMPDPASKYLQKWLGM-SKKTADVTAQLACPAGIQLFSNPLNLLGMDLYNNPNSSAAARGKLIVSEYTSSMILRVSRTGPAFGIGGVGNTAFR 414
            +D  FTRMF     RP P +TY LF +RD +TVAASFN P+  S  L ++  +  K++ADV AQLACPA +Q  S P++LLG+DLYN P  SA  R  L+  EY  S I R++R GPAFGIGG+GN  FR
Sbjct:  151 KDRAFTRMFGLTAARPLPLATYGLFASRDALTVAASFNAPEVVSATLLRYGAVWDKRSADVVAQLACPAAVQFLSTPVHLLGLDLYNRPGVSAGQRITLVGREYFKSAIARIARIGPAFGIGGIGNAGFR 280          
BLAST of mRNA_H-elongata_contig18339.4930.1 vs. uniprot
Match: A0A068RU79_9FUNG (Uncharacterized protein n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A068RU79_9FUNG)

HSP 1 Score: 131 bits (330), Expect = 4.700e-35
Identity = 70/133 (52.63%), Postives = 85/133 (63.91%), Query Frame = 1
Query:   28 QDLQFTRMFTTVKPRPFPASTYLLFTARDGMTVAASFNMPDPASKYL--QKWLGMSKKTADVTAQLACPAGIQLFSNPLNLLGMDLYNNPNSSAAARGKLIVSEYTSSMILRVSRTGPAFGIGGVGNTAFRKY 420
            +D  F RMF        P  +YLLF ARD +T+AASF  P   +++L  +K +  S K A VTAQLACPA IQ  S PL+LLG+DLYN  N S A    LI +EY  S + RV+R GPAFGIGGVGNT FR +
Sbjct:  132 KDRAFARMFGVTASHSLPLMSYLLFAARDSLTIAASFTAPPVVTRWLFEEKQVFSSHKNAAVTAQLACPAAIQFISTPLHLLGLDLYNRSNVSPAQHFSLIRAEYLKSTLARVARIGPAFGIGGVGNTYFRSF 264          
BLAST of mRNA_H-elongata_contig18339.4930.1 vs. uniprot
Match: S2JIC1_MUCC1 (Uncharacterized protein n=4 Tax=Mucor TaxID=4830 RepID=S2JIC1_MUCC1)

HSP 1 Score: 129 bits (324), Expect = 3.890e-34
Identity = 68/137 (49.64%), Postives = 86/137 (62.77%), Query Frame = 1
Query:   13 FLSCDQDLQFTRMFTTVKPRPFPASTYLLFTARDGMTVAASFNMPDPASKYLQK-WLGMSKKTADVTAQLACPAGIQLFSNPLNLLGMDLYNNPNSSAAARGKLIVSEYTSSMILRVSRTGPAFGIGGVGNTAFRKY 420
            FL   +D  F  MF     +  P  +YLLF ARD +T+AASF  P   +  LQ   +  S+K+A+V AQL CPA +QL S P++L  +DLYN P +S A RG+LI  EY  S + R+ R GPAFGIGGVGNT FR Y
Sbjct:  131 FLCVYKDKVFASMFGVSASKALPKLSYLLFAARDSLTIAASFTAPTYIANALQNNSIVSSEKSANVIAQLVCPAAVQLASTPVHLYALDLYNRPGASLAMRGQLIKKEYVKSTLARIGRIGPAFGIGGVGNTFFRSY 267          
BLAST of mRNA_H-elongata_contig18339.4930.1 vs. uniprot
Match: A0A662XCZ4_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XCZ4_9STRA)

HSP 1 Score: 129 bits (323), Expect = 4.420e-34
Identity = 66/136 (48.53%), Postives = 80/136 (58.82%), Query Frame = 1
Query:   28 QDLQFTRMFTTVKPRPFPASTYLLFTARDGMTVAASFNMPDPASKYLQKWLGMSKKTADVTAQLACPAGIQLFSNPLNLLGMDLYNNPNSSAAARGKLIVSEYTSSMILRVSRTGPAFGIGGVGNTAFRKYFASLF 435
            +D  F RMF  + P  FP ++  LF  RD +TVAASFN P   +K L+    M    A   AQL CPA +Q  S PL+LLG+DLYNN   SAA R   +  EY  S+  R+ R GPAFGIGGVGNT FR    + F
Sbjct:  126 KDRAFARMFGVIAPAAFPLASIGLFAVRDSLTVAASFNAPKFLAKKLEDDAKMQPSRAGTIAQLVCPAAVQFISTPLHLLGLDLYNNKGLSAAKRASFVQREYLKSVFARIGRIGPAFGIGGVGNTYFRDQLRTTF 261          
BLAST of mRNA_H-elongata_contig18339.4930.1 vs. uniprot
Match: A0A0B7NP43_9FUNG (Uncharacterized protein n=1 Tax=Parasitella parasitica TaxID=35722 RepID=A0A0B7NP43_9FUNG)

HSP 1 Score: 128 bits (322), Expect = 7.560e-34
Identity = 69/141 (48.94%), Postives = 86/141 (60.99%), Query Frame = 1
Query:    1 CEYSFLSCDQDLQFTRMFTTVKPRPFPASTYLLFTARDGMTVAASFNMPDPASKYLQKWLGMS-KKTADVTAQLACPAGIQLFSNPLNLLGMDLYNNPNSSAAARGKLIVSEYTSSMILRVSRTGPAFGIGGVGNTAFRKY 420
            C   FL   +D  F  MF     +  P  +YLLF ARD +T+AASF  P   +  LQ    +S +K+A+V AQL CPA +QL S P++L  +DLYN P  S A RG+LI  EY  S + R+ R GPAFGIGGVGNT FR Y
Sbjct:  126 CVNIFLCVYKDKVFASMFGVSVSKSLPKLSYLLFAARDSLTIAASFTAPTYIANALQNSSFVSTEKSANVVAQLVCPAAVQLASTPVHLYALDLYNRPTVSMAMRGQLIKKEYVKSTLARIGRIGPAFGIGGVGNTFFRSY 266          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18339.4930.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z5G8_9STRA3.210e-4458.09Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A261XX22_9FUNG1.770e-3855.38Uncharacterized protein n=1 Tax=Bifiguratus adelai... [more]
A0A8H7S7R9_9FUNG5.090e-3854.96Uncharacterized protein n=1 Tax=Mucor circinatus T... [more]
A0A8H7U8D9_MORIS3.420e-3753.79Uncharacterized protein n=1 Tax=Mortierella isabel... [more]
A0A8H7PPD2_9FUNG3.720e-3652.27Uncharacterized protein n=1 Tax=Umbelopsis vinacea... [more]
A0A433PI02_9FUNG4.300e-3653.08Uncharacterized protein n=1 Tax=Endogone sp. FLAS-... [more]
A0A068RU79_9FUNG4.700e-3552.63Uncharacterized protein n=2 Tax=Lichtheimia TaxID=... [more]
S2JIC1_MUCC13.890e-3449.64Uncharacterized protein n=4 Tax=Mucor TaxID=4830 R... [more]
A0A662XCZ4_9STRA4.420e-3448.53Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A0B7NP43_9FUNG7.560e-3448.94Uncharacterized protein n=1 Tax=Parasitella parasi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18339contigH-elongata_contig18339:1393..2169 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score130.2
Seed ortholog evalue8.1e-28
Seed eggNOG ortholog42099.EPrPV00000018360
EggNOG free text desc.Pc13g06010 protein. Source PGD
EggNOG OGs1MEHD@121069,28PN9@1,2QWAD@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size444
Cds size444
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930053.1064503-CDS-H-elongata_contig18339:1392..16201622930053.1064503-CDS-H-elongata_contig18339:1392..1620Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18339 1393..1620 -
1691679262.4769497-CDS-H-elongata_contig18339:1392..16201691679262.4769497-CDS-H-elongata_contig18339:1392..1620Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18339 1393..1620 -
1622930053.1172829-CDS-H-elongata_contig18339:1953..21691622930053.1172829-CDS-H-elongata_contig18339:1953..2169Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18339 1954..2169 -
1691679262.4869242-CDS-H-elongata_contig18339:1953..21691691679262.4869242-CDS-H-elongata_contig18339:1953..2169Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18339 1954..2169 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18339.4930.1prot_H-elongata_contig18339.4930.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18339 1393..2169 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18339.4930.1

>prot_H-elongata_contig18339.4930.1 ID=prot_H-elongata_contig18339.4930.1|Name=mRNA_H-elongata_contig18339.4930.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=148bp
CEYSFLSCDQDLQFTRMFTTVKPRPFPASTYLLFTARDGMTVAASFNMPD
PASKYLQKWLGMSKKTADVTAQLACPAGIQLFSNPLNLLGMDLYNNPNSS
AAARGKLIVSEYTSSMILRVSRTGPAFGIGGVGNTAFRKYFASLFIS*
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mRNA from alignment at H-elongata_contig18339:1393..2169-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18339.4930.1 ID=mRNA_H-elongata_contig18339.4930.1|Name=mRNA_H-elongata_contig18339.4930.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=777bp|location=Sequence derived from alignment at H-elongata_contig18339:1393..2169- (Himanthalia elongata Himel1 dioecious)
TGTGAATATTCATTCCTTTCGTGCGACCAGGATCTTCAATTCACGCGTAT GTTCACAACGGTGAAGCCGAGGCCATTTCCAGCATCGACCTACCTTCTGT TCACGGCCCGTGACGGCATGACCGTCGCAGCATCGTTTAACATGCCCGAT CCGGCGTCGAAGTACCTCCAGAAGTGGCTGGGAATGTCGAAGAAAACCGC TGACGTCACTGCGCAGGTATGGAAGGCGACGGCATCCCGAAGCTTTCATT TTATGTCAGGTTGTTTTTAGTATGTAAAACATGAGCTGATAGCGATATGT TAGGCAAAAATACCGGAGAAGGAATGATGAGCATGTGGGCACTGACGTCC TCCTATGGCCAAAGTACGGGCTAAATGTATCCCGGTCGTTCAAAGCTTAC TCGTCATATTTTCCCAAGGGCGGCATCTACGACTGCTTCTTTGTAACCCA ATGTCCTTCCTAATATCCACCCCGACCTCATTGCTCCTCTTCGCGTATAC CTACCTGTAGATATCCCCCCTCCCCTCCCCGGCACATAATGGCTGGCAGC TTGCGTGTCCAGCAGGCATCCAATTGTTCTCGAACCCGTTGAACCTCCTC GGGATGGACCTTTACAACAACCCGAACAGTAGCGCAGCCGCCCGCGGAAA GTTGATCGTGTCGGAGTACACCTCGTCTATGATTTTACGAGTCAGCCGCA CCGGCCCCGCTTTCGGAATAGGTGGTGTGGGTAACACGGCGTTCCGAAAA TACTTCGCATCCCTATTTATCTCTTAG
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Coding sequence (CDS) from alignment at H-elongata_contig18339:1393..2169-

>mRNA_H-elongata_contig18339.4930.1 ID=mRNA_H-elongata_contig18339.4930.1|Name=mRNA_H-elongata_contig18339.4930.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=888bp|location=Sequence derived from alignment at H-elongata_contig18339:1393..2169- (Himanthalia elongata Himel1 dioecious)
TGTGAATATTCATTCCTTTCGTGCGACCAGGATCTTCAATTCACGCGTAT
GTTCACAACGGTGAAGCCGAGGCCATTTCCAGCATCGACCTACCTTCTGT
TCACGGCCCGTGACGGCATGACCGTCGCAGCATCGTTTAACATGCCCGAT
CCGGCGTCGAAGTACCTCCAGAAGTGGCTGGGAATGTCGAAGAAAACCGC
TGACGTCACTGCGCAGTGTGAATATTCATTCCTTTCGTGCGACCAGGATC
TTCAATTCACGCGTATGTTCACAACGGTGAAGCCGAGGCCATTTCCAGCA
TCGACCTACCTTCTGTTCACGGCCCGTGACGGCATGACCGTCGCAGCATC
GTTTAACATGCCCGATCCGGCGTCGAAGTACCTCCAGAAGTGGCTGGGAA
TGTCGAAGAAAACCGCTGACGTCACTGCGCAGCTTGCGTGTCCAGCAGGC
ATCCAATTGTTCTCGAACCCGTTGAACCTCCTCGGGATGGACCTTTACAA
CAACCCGAACAGTAGCGCAGCCGCCCGCGGAAAGTTGATCGTGTCGGAGT
ACACCTCGTCTATGATTTTACGAGTCAGCCGCACCGGCCCCGCTTTCGGA
ATAGGTGGTGTGGGTAACACGGCGTTCCGAAAATACTTCGCATCCCTATT
TATCTCTTAGCTTGCGTGTCCAGCAGGCATCCAATTGTTCTCGAACCCGT
TGAACCTCCTCGGGATGGACCTTTACAACAACCCGAACAGTAGCGCAGCC
GCCCGCGGAAAGTTGATCGTGTCGGAGTACACCTCGTCTATGATTTTACG
AGTCAGCCGCACCGGCCCCGCTTTCGGAATAGGTGGTGTGGGTAACACGG
CGTTCCGAAAATACTTCGCATCCCTATTTATCTCTTAG
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