mRNA_H-elongata_contig183115.4919.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig183115.4919.1
Unique NamemRNA_H-elongata_contig183115.4919.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig183115.4919.1 vs. uniprot
Match: A0A6H5L276_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L276_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 1.920e-31
Identity = 49/64 (76.56%), Postives = 56/64 (87.50%), Query Frame = 1
Query:    1 ADVLCLQDVDFFHRWWRPQLTRAGYDSIFKQRTSKSGKRREGIVIAWKRDIFDLFRSEDMEFNR 192
            ADVLCLQDVD FH+WW PQLT AGYDS+FKQRTS++   REG+VIAWKRD+FDLFRS +ME NR
Sbjct:  102 ADVLCLQDVDCFHQWWSPQLTSAGYDSLFKQRTSRAAMHREGVVIAWKRDVFDLFRSGEMELNR 165          
BLAST of mRNA_H-elongata_contig183115.4919.1 vs. uniprot
Match: D7G7V5_ECTSI (Fibronectin type-III domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7V5_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 1.330e-28
Identity = 49/64 (76.56%), Postives = 56/64 (87.50%), Query Frame = 1
Query:    1 ADVLCLQDVDFFHRWWRPQLTRAGYDSIFKQRTSKSGKRREGIVIAWKRDIFDLFRSEDMEFNR 192
            ADVLCLQDVD FH+WW PQLT AGYDS+FKQRTS++   REG+VIAWKRD+FDLFRS +ME NR
Sbjct:  102 ADVLCLQDVDCFHQWWSPQLTSAGYDSLFKQRTSRAAMHREGVVIAWKRDVFDLFRSGEMELNR 165          
BLAST of mRNA_H-elongata_contig183115.4919.1 vs. uniprot
Match: A0A7S2ASI2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2ASI2_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.570e-20
Identity = 37/62 (59.68%), Postives = 46/62 (74.19%), Query Frame = 1
Query:    4 DVLCLQDVDFFHRWWRPQLTRAGYDSIFKQRTSKSGKRREGIVIAWKRDIFDLFRSEDMEFN 189
            D++CLQDVD +  +WRPQL  +GYDSIFKQRTSK     EG+++AW R  F L RSE +EFN
Sbjct:   29 DLICLQDVDNYDDFWRPQLRISGYDSIFKQRTSKVSPHNEGVLVAWTRTKFQLIRSETLEFN 90          
BLAST of mRNA_H-elongata_contig183115.4919.1 vs. uniprot
Match: A0A5D6YJ19_9STRA (Fibronectin type-III domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YJ19_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 3.530e-13
Identity = 32/66 (48.48%), Postives = 43/66 (65.15%), Query Frame = 1
Query:    1 ADVLCLQDVDFFHRWWRPQLTRAGYDSIFKQR---TSKSGKRREGIVIAWKRDIFDLFRSEDMEFN 189
            AD+LCLQ+VD +  WW  QLT  GYDS+F  R   +  S    EG+V A++RD F LFRS+ ++ N
Sbjct:   99 ADILCLQEVDDYDDWWAAQLTAVGYDSVFAPRPRASDSSDTMDEGLVTAFRRDAFQLFRSKQIDLN 164          
BLAST of mRNA_H-elongata_contig183115.4919.1 vs. uniprot
Match: A0A2D4BK15_PYTIN (Fibronectin type-III domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BK15_PYTIN)

HSP 1 Score: 68.2 bits (165), Expect = 7.980e-12
Identity = 31/63 (49.21%), Postives = 44/63 (69.84%), Query Frame = 1
Query:    1 ADVLCLQDVDFFHRWWRPQLTRAGYDSIFKQRTSKSGKRREGIVIAWKRDIFDLFRSEDMEFN 189
            ADVLCLQ+ D +  +W  QLT  GYDS+F   +  SG R +G++IA++R+ F LFRSE ++ N
Sbjct:   73 ADVLCLQEADDYDDFWSVQLTDTGYDSVFA--SHPSGTRDDGLLIAFRRERFQLFRSETIDLN 133          
BLAST of mRNA_H-elongata_contig183115.4919.1 vs. uniprot
Match: K3WS66_GLOUD (Fibronectin type-III domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WS66_GLOUD)

HSP 1 Score: 65.9 bits (159), Expect = 5.210e-11
Identity = 27/63 (42.86%), Postives = 43/63 (68.25%), Query Frame = 1
Query:    1 ADVLCLQDVDFFHRWWRPQLTRAGYDSIFKQRTSKSGKRREGIVIAWKRDIFDLFRSEDMEFN 189
            AD++CLQ+VD +  WW  +L   GYDS++ +R+  S    +G+V A++RD+F LF S+ +E N
Sbjct:  116 ADIMCLQEVDDYDDWWAAKLISNGYDSVYARRSGSSMD--DGVVTAFRRDVFQLFCSKAVELN 176          
BLAST of mRNA_H-elongata_contig183115.4919.1 vs. uniprot
Match: A0A225UKI4_9STRA (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UKI4_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.120e-9
Identity = 28/68 (41.18%), Postives = 42/68 (61.76%), Query Frame = 1
Query:    1 ADVLCLQDVDFFHRWWRPQLTRAGYDSIFKQR---TSKSGKRR--EGIVIAWKRDIFDLFRSEDMEFN 189
            AD++CLQ+VD +  WW  +L  AGYDSI+      TS S  +   +G+V A+++  F LFRS ++  N
Sbjct:   76 ADIMCLQEVDEYDDWWAAELAIAGYDSIYATSAAPTSASATKEIDDGLVTAFRKSTFQLFRSTEVHLN 143          
BLAST of mRNA_H-elongata_contig183115.4919.1 vs. uniprot
Match: T0PZ96_SAPDV (Fibronectin type-III domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0PZ96_SAPDV)

HSP 1 Score: 61.6 bits (148), Expect = 1.620e-9
Identity = 28/63 (44.44%), Postives = 42/63 (66.67%), Query Frame = 1
Query:    1 ADVLCLQDVDFFHRWWRPQLTRAGYDSIFKQRTSKSGKRREGIVIAWKRDIFDLFRSEDMEFN 189
            ADV+CLQ+VD +  +W P L   GYDS++  R    G   +G+VIA++R  F +FR++ +EFN
Sbjct:   76 ADVVCLQEVDDYELFWIPALNALGYDSVYHCRP---GDHDDGLVIAFRRLNFQIFRTQRIEFN 135          
BLAST of mRNA_H-elongata_contig183115.4919.1 vs. uniprot
Match: G4ZS96_PHYSP (Fibronectin type-III domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4ZS96_PHYSP)

HSP 1 Score: 61.6 bits (148), Expect = 1.620e-9
Identity = 27/68 (39.71%), Postives = 40/68 (58.82%), Query Frame = 1
Query:    1 ADVLCLQDVDFFHRWWRPQLTRAGYDSIFKQRTSKSGKR-----REGIVIAWKRDIFDLFRSEDMEFN 189
            AD++CLQ+VD +  WW  +L  AGYDSI+    + S         EG+V A+++  F LFRS ++  N
Sbjct:   81 ADIMCLQEVDEYDDWWAVELATAGYDSIYATSAAPSSAAVAKEIDEGLVTAFRKSTFQLFRSSEVHLN 148          
BLAST of mRNA_H-elongata_contig183115.4919.1 vs. uniprot
Match: A0A421FB39_9STRA (Fibronectin type-III domain-containing protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421FB39_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 2.210e-9
Identity = 28/70 (40.00%), Postives = 43/70 (61.43%), Query Frame = 1
Query:    1 ADVLCLQDVDFFHRWWRPQLTRAGYDSIFKQRTSKSGKRR-------EGIVIAWKRDIFDLFRSEDMEFN 189
            AD++CLQ++D +  WW  +L  AGYDSI+   TS + +         EG+V A+++  F LFRSE++  N
Sbjct:   79 ADIMCLQEIDEYDDWWAAELATAGYDSIYA--TSAAPQSAVVVNAIDEGLVTAFRKSTFQLFRSEEVHLN 146          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig183115.4919.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L276_9PHAE1.920e-3176.56Endo/exonuclease/phosphatase domain-containing pro... [more]
D7G7V5_ECTSI1.330e-2876.56Fibronectin type-III domain-containing protein n=1... [more]
A0A7S2ASI2_9STRA1.570e-2059.68Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A5D6YJ19_9STRA3.530e-1348.48Fibronectin type-III domain-containing protein n=1... [more]
A0A2D4BK15_PYTIN7.980e-1249.21Fibronectin type-III domain-containing protein n=1... [more]
K3WS66_GLOUD5.210e-1142.86Fibronectin type-III domain-containing protein n=1... [more]
A0A225UKI4_9STRA1.120e-941.18Endo/exonuclease/phosphatase domain-containing pro... [more]
T0PZ96_SAPDV1.620e-944.44Fibronectin type-III domain-containing protein n=1... [more]
G4ZS96_PHYSP1.620e-939.71Fibronectin type-III domain-containing protein n=4... [more]
A0A421FB39_9STRA2.210e-940.00Fibronectin type-III domain-containing protein n=4... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig183115contigH-elongata_contig183115:805..999 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.5
Seed ortholog evalue9e-24
Seed eggNOG ortholog2880.D7G7V5
EggNOG free text desc.Endonuclease/Exonuclease/phosphatase family
EggNOG OGsCOG5239@1,KOG0620@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size195
Cds size195
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930052.3992887-CDS-H-elongata_contig183115:804..9991622930052.3992887-CDS-H-elongata_contig183115:804..999Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig183115 805..999 -
1691679262.1652176-CDS-H-elongata_contig183115:804..9991691679262.1652176-CDS-H-elongata_contig183115:804..999Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig183115 805..999 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig183115.4919.1prot_H-elongata_contig183115.4919.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig183115 805..999 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig183115.4919.1

>prot_H-elongata_contig183115.4919.1 ID=prot_H-elongata_contig183115.4919.1|Name=mRNA_H-elongata_contig183115.4919.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=65bp
ADVLCLQDVDFFHRWWRPQLTRAGYDSIFKQRTSKSGKRREGIVIAWKRD
IFDLFRSEDMEFNR*
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mRNA from alignment at H-elongata_contig183115:805..999-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig183115.4919.1 ID=mRNA_H-elongata_contig183115.4919.1|Name=mRNA_H-elongata_contig183115.4919.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=195bp|location=Sequence derived from alignment at H-elongata_contig183115:805..999- (Himanthalia elongata Himel1 dioecious)
GCTGACGTCCTGTGCCTCCAAGATGTCGACTTCTTCCATCGGTGGTGGAG GCCCCAGCTGACCCGTGCAGGATACGACAGCATATTCAAGCAAAGAACTA GCAAATCAGGAAAACGTCGTGAAGGCATCGTCATAGCCTGGAAGCGTGAC ATTTTTGACCTGTTCCGGAGTGAAGATATGGAATTCAACAGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig183115:805..999-

>mRNA_H-elongata_contig183115.4919.1 ID=mRNA_H-elongata_contig183115.4919.1|Name=mRNA_H-elongata_contig183115.4919.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=390bp|location=Sequence derived from alignment at H-elongata_contig183115:805..999- (Himanthalia elongata Himel1 dioecious)
GCTGACGTCCTGTGCCTCCAAGATGTCGACTTCTTCCATCGGTGGTGGAG
GCCCCAGCTGACCCGTGCAGGATACGACAGCATATTCAAGCAAAGAACTA
GCAAATCAGGAAAACGTCGTGAAGGCATCGTCATAGCCTGGAAGCGTGAC
ATTTTTGACCTGTTCCGGAGTGAAGATATGGAATTCAACAGGTAAGCTGA
CGTCCTGTGCCTCCAAGATGTCGACTTCTTCCATCGGTGGTGGAGGCCCC
AGCTGACCCGTGCAGGATACGACAGCATATTCAAGCAAAGAACTAGCAAA
TCAGGAAAACGTCGTGAAGGCATCGTCATAGCCTGGAAGCGTGACATTTT
TGACCTGTTCCGGAGTGAAGATATGGAATTCAACAGGTAA
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