mRNA_H-elongata_contig182632.4898.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig182632.4898.1
Unique NamemRNA_H-elongata_contig182632.4898.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig182632.4898.1 vs. uniprot
Match: A0A6H5JVG8_9PHAE (Glu_synthase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVG8_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 7.420e-38
Identity = 70/83 (84.34%), Postives = 73/83 (87.95%), Query Frame = 1
Query:    1 CVGHADEVAALVAAMASKGPGHGPDFFTIDGSEGGTGAAPPEFSNSVGTPLVEGLVLVDDLLTGAGLRDRVKIICSGKVLRKF 249
            CVG  DEVAALV AM  KGPGHGPDFFT+DGSEGGTGAAPPEFSNSVGTPLVEGLVLVDDLL GAGLR+ VK+ICSGKV   F
Sbjct:  337 CVGQYDEVAALVGAMVEKGPGHGPDFFTVDGSEGGTGAAPPEFSNSVGTPLVEGLVLVDDLLRGAGLREDVKVICSGKVTSGF 419          
BLAST of mRNA_H-elongata_contig182632.4898.1 vs. uniprot
Match: A0A0L0FI59_9EUKA (Glu_synthase domain-containing protein (Fragment) n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FI59_9EUKA)

HSP 1 Score: 106 bits (264), Expect = 1.380e-26
Identity = 54/83 (65.06%), Postives = 65/83 (78.31%), Query Frame = 1
Query:    1 CVGHADEVAALVAAMASKGPGHGPDFFTIDGSEGGTGAAPPEFSNSVGTPLVEGLVLVDDLLTGAGLRDRVKIICSGKVLRKF 249
            CVG  +E A+LVAAM        PDF T+DG+EGGTGAAPPEFSNSVG PL+EGL  V+D+LTGAG+RD+VKII +GKV+  F
Sbjct:    5 CVGRPEEFASLVAAMIKTNIA--PDFVTVDGTEGGTGAAPPEFSNSVGMPLIEGLTFVNDILTGAGIRDQVKIITAGKVISGF 85          
BLAST of mRNA_H-elongata_contig182632.4898.1 vs. uniprot
Match: A0A830HEV5_9CHLO (Glu_synthase domain-containing protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HEV5_9CHLO)

HSP 1 Score: 106 bits (264), Expect = 6.470e-25
Identity = 54/83 (65.06%), Postives = 65/83 (78.31%), Query Frame = 1
Query:    1 CVGHADEVAALVAAMASKGPGHGPDFFTIDGSEGGTGAAPPEFSNSVGTPLVEGLVLVDDLLTGAGLRDRVKIICSGKVLRKF 249
            C+G+ +E  ALV AM   G  H PDF TIDG EGGTGAAPPEFSN VG PL+EGLV+VD +L GAGLRD+V++ICSGK++  F
Sbjct:  391 CMGYGEEFMALVHAMVETGI-H-PDFVTIDGGEGGTGAAPPEFSNRVGAPLIEGLVIVDRVLVGAGLRDKVRVICSGKIVTGF 471          
BLAST of mRNA_H-elongata_contig182632.4898.1 vs. uniprot
Match: A0A835YM27_9STRA (Glu_synthase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM27_9STRA)

HSP 1 Score: 103 bits (258), Expect = 2.180e-24
Identity = 53/83 (63.86%), Postives = 62/83 (74.70%), Query Frame = 1
Query:    1 CVGHADEVAALVAAMASKGPGHGPDFFTIDGSEGGTGAAPPEFSNSVGTPLVEGLVLVDDLLTGAGLRDRVKIICSGKVLRKF 249
            CVG+  E+A +V AM   G G  PDF  IDG EGGTGAAPPEFSNSVGTPLV+ + L  DLL GAG+R+RV +IC+GKVL  F
Sbjct:  308 CVGNHVELAGIVRAMQESGSG--PDFINIDGGEGGTGAAPPEFSNSVGTPLVDAVALATDLLIGAGIRERVTVICAGKVLSGF 388          
BLAST of mRNA_H-elongata_contig182632.4898.1 vs. uniprot
Match: A0A1Y2D4Y5_9FUNG (FMN-linked oxidoreductase n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2D4Y5_9FUNG)

HSP 1 Score: 101 bits (252), Expect = 2.720e-23
Identity = 53/83 (63.86%), Postives = 63/83 (75.90%), Query Frame = 1
Query:    1 CVGHADEVAALVAAMASKGPGHGPDFFTIDGSEGGTGAAPPEFSNSVGTPLVEGLVLVDDLLTGAGLRDRVKIICSGKVLRKF 249
            CVG  DE+ AL+ AM S G    PDF TIDG EGGTGAAP EFSNSVG P++EGL+LV+ LL GAG+R+ +KII SGK+L  F
Sbjct:  393 CVGRVDELTALIHAMQSTGIK--PDFITIDGGEGGTGAAPVEFSNSVGMPMMEGLILVNGLLRGAGIREDIKIIVSGKILSAF 473          
BLAST of mRNA_H-elongata_contig182632.4898.1 vs. uniprot
Match: D7FI20_ECTSI (Ferredoxin-dependent glutamate synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI20_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 2.340e-22
Identity = 47/55 (85.45%), Postives = 49/55 (89.09%), Query Frame = 1
Query:   85 IDGSEGGTGAAPPEFSNSVGTPLVEGLVLVDDLLTGAGLRDRVKIICSGKVLRKF 249
            + GSEGGTGAAPPEFSNSVGTPLVEGLVLVDDLL GAGLRD VK+ICSGKV   F
Sbjct:    1 MQGSEGGTGAAPPEFSNSVGTPLVEGLVLVDDLLRGAGLRDDVKVICSGKVTSGF 55          
BLAST of mRNA_H-elongata_contig182632.4898.1 vs. uniprot
Match: A0A0G4FIN9_9ALVE (Glu_synthase domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FIN9_9ALVE)

HSP 1 Score: 97.4 bits (241), Expect = 8.310e-22
Identity = 50/83 (60.24%), Postives = 63/83 (75.90%), Query Frame = 1
Query:    1 CVGHADEVAALVAAMASKGPGHGPDFFTIDGSEGGTGAAPPEFSNSVGTPLVEGLVLVDDLLTGAGLRDRVKIICSGKVLRKF 249
            CVG  ++ +A+  AM   G    PDF T+DGSEGGTGAAPPEFS+SVG PL EGL LV+++LTG GLRD+++II SGK+L  F
Sbjct:  364 CVGQPEDFSAICHAMIETGIR--PDFVTVDGSEGGTGAAPPEFSDSVGMPLQEGLNLVNNMLTGGGLRDKIRIIASGKILSGF 444          
BLAST of mRNA_H-elongata_contig182632.4898.1 vs. uniprot
Match: A0A0M0JJ35_9EUKA (Membrane protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JJ35_9EUKA)

HSP 1 Score: 96.3 bits (238), Expect = 2.260e-21
Identity = 55/83 (66.27%), Postives = 59/83 (71.08%), Query Frame = 1
Query:    1 CVGHADEVAALVAAMASKGPGHGPDFFTIDGSEGGTGAAPPEFSNSVGTPLVEGLVLVDDLLTGAGLRDRVKIICSGKVLRKF 249
            CVG   EVAALV AM   G    PDF TIDG+EGGTGAAP EF NS+G PL EGL LV+ LLTGAGLR  VK+I SGKV   F
Sbjct: 1265 CVGQPAEVAALVHAMLDTGIT--PDFITIDGAEGGTGAAPLEFQNSIGFPLAEGLRLVNSLLTGAGLRKEVKLIASGKVYDGF 1345          
BLAST of mRNA_H-elongata_contig182632.4898.1 vs. uniprot
Match: A0A0G4J4Y0_PLABS (Glu_synthase domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J4Y0_PLABS)

HSP 1 Score: 94.7 bits (234), Expect = 7.390e-21
Identity = 51/83 (61.45%), Postives = 60/83 (72.29%), Query Frame = 1
Query:    1 CVGHADEVAALVAAMASKGPGHGPDFFTIDGSEGGTGAAPPEFSNSVGTPLVEGLVLVDDLLTGAGLRDRVKIICSGKVLRKF 249
            C+G  DE   ++ A A +  G  PDF T+DG EGGTGAAPPEFS+ VGTPLVEGL  VD++L GA LR R+KII SGKVL  F
Sbjct:  365 CIGRFDEF--IMLAHAFQETGIVPDFITVDGGEGGTGAAPPEFSDRVGTPLVEGLRFVDNVLIGADLRHRIKIIASGKVLTGF 445          
BLAST of mRNA_H-elongata_contig182632.4898.1 vs. uniprot
Match: A0A7S3ZZJ7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZZJ7_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 7.600e-21
Identity = 49/83 (59.04%), Postives = 57/83 (68.67%), Query Frame = 1
Query:    1 CVGHADEVAALVAAMASKGPGHGPDFFTIDGSEGGTGAAPPEFSNSVGTPLVEGLVLVDDLLTGAGLRDRVKIICSGKVLRKF 249
            CVG   E AAL  AM        PDF T+DG+EGGTGAAPPEF +S+G PL EGL +VD  LTGAGLRD VK+I +GK+   F
Sbjct:  405 CVGQPHEFAALCHAMLDANVA--PDFVTVDGTEGGTGAAPPEFQDSIGMPLAEGLRIVDGFLTGAGLRDEVKVIAAGKIYNGF 485          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig182632.4898.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JVG8_9PHAE7.420e-3884.34Glu_synthase domain-containing protein n=1 Tax=Ect... [more]
A0A0L0FI59_9EUKA1.380e-2665.06Glu_synthase domain-containing protein (Fragment) ... [more]
A0A830HEV5_9CHLO6.470e-2565.06Glu_synthase domain-containing protein n=1 Tax=Pyc... [more]
A0A835YM27_9STRA2.180e-2463.86Glu_synthase domain-containing protein n=1 Tax=Tri... [more]
A0A1Y2D4Y5_9FUNG2.720e-2363.86FMN-linked oxidoreductase n=1 Tax=Rhizoclosmatium ... [more]
D7FI20_ECTSI2.340e-2285.45Ferredoxin-dependent glutamate synthase n=1 Tax=Ec... [more]
A0A0G4FIN9_9ALVE8.310e-2260.24Glu_synthase domain-containing protein n=1 Tax=Chr... [more]
A0A0M0JJ35_9EUKA2.260e-2166.27Membrane protein n=1 Tax=Chrysochromulina tobinii ... [more]
A0A0G4J4Y0_PLABS7.390e-2161.45Glu_synthase domain-containing protein n=1 Tax=Pla... [more]
A0A7S3ZZJ7_9STRA7.600e-2159.04Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig182632contigH-elongata_contig182632:447..1110 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.6
Seed ortholog evalue1.4e-21
Seed eggNOG ortholog72019.SARC_11032T0
EggNOG free text desc.L-glutamate biosynthetic process
EggNOG OGsCOG0069@1,KOG0399@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size249
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930050.345945-CDS-H-elongata_contig182632:446..5361622930050.345945-CDS-H-elongata_contig182632:446..536Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig182632 447..536 +
1691679261.402665-CDS-H-elongata_contig182632:446..5361691679261.402665-CDS-H-elongata_contig182632:446..536Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig182632 447..536 +
1622930050.3570178-CDS-H-elongata_contig182632:951..11101622930050.3570178-CDS-H-elongata_contig182632:951..1110Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig182632 952..1110 +
1691679261.4118974-CDS-H-elongata_contig182632:951..11101691679261.4118974-CDS-H-elongata_contig182632:951..1110Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig182632 952..1110 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig182632.4898.1prot_H-elongata_contig182632.4898.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig182632 447..1110 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig182632.4898.1

>prot_H-elongata_contig182632.4898.1 ID=prot_H-elongata_contig182632.4898.1|Name=mRNA_H-elongata_contig182632.4898.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
CVGHADEVAALVAAMASKGPGHGPDFFTIDGSEGGTGAAPPEFSNSVGTP
LVEGLVLVDDLLTGAGLRDRVKIICSGKVLRKF
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mRNA from alignment at H-elongata_contig182632:447..1110+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig182632.4898.1 ID=mRNA_H-elongata_contig182632.4898.1|Name=mRNA_H-elongata_contig182632.4898.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=664bp|location=Sequence derived from alignment at H-elongata_contig182632:447..1110+ (Himanthalia elongata Himel1 dioecious)
TGCGTCGGGCACGCCGACGAGGTCGCGGCGCTGGTTGCGGCGATGGCGAG CAAGGGACCCGGACACGGACCCGACTTCTTCACCATTGACGTGAGAAAGC ACTCAGGGTCTCGAAAAGGGGGCAAGGGTATATATGTGTGTGTGTGTGTG TGTGTGTCCCATTTGCGCGCCGGAGCGATGCAGTCGTCGTGCCTCTTGTC TCCCAAGAAATTGATTGGTTCATCCTCGGTGTGCACACTGCAGAGTGAAC GCAAACGTAAAGACAACATAACAGAAGTATTTGCTTCGTGGTTAGCGACA GAGTCCAGGGGATGGGGGATAGGGGATGGGGGTTATGACCGACATAATAC AGCAATACACTGTGCTCCAGCGATCCACACCACGTTCTTCGAAATAGCAC GCAACATCGCGCGTGCCGTTTTCCCCTATGCTAAATATTTCAAATTGTCC TACTGTTGCTGTTGCTGTTTGTTTGTTTGCTTGTTTTTTTTGGGGGGTGC CACAGGGGTCTGAGGGAGGGACAGGTGCGGCCCCGCCCGAGTTCTCGAAT TCCGTGGGCACTCCCCTGGTGGAGGGACTCGTTCTGGTGGATGATCTGCT CACAGGGGCTGGTCTGAGGGACCGCGTGAAAATAATCTGCAGCGGGAAGG TACTCAGGAAATTT
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Coding sequence (CDS) from alignment at H-elongata_contig182632:447..1110+

>mRNA_H-elongata_contig182632.4898.1 ID=mRNA_H-elongata_contig182632.4898.1|Name=mRNA_H-elongata_contig182632.4898.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig182632:447..1110+ (Himanthalia elongata Himel1 dioecious)
TGCGTCGGGCACGCCGACGAGGTCGCGGCGCTGGTTGCGGCGATGGCGAG
CAAGGGACCCGGACACGGACCCGACTTCTTCACCATTGACTGCGTCGGGC
ACGCCGACGAGGTCGCGGCGCTGGTTGCGGCGATGGCGAGCAAGGGACCC
GGACACGGACCCGACTTCTTCACCATTGACGGGTCTGAGGGAGGGACAGG
TGCGGCCCCGCCCGAGTTCTCGAATTCCGTGGGCACTCCCCTGGTGGAGG
GACTCGTTCTGGTGGATGATCTGCTCACAGGGGCTGGTCTGAGGGACCGC
GTGAAAATAATCTGCAGCGGGAAGGTACTCAGGAAATTTGGGTCTGAGGG
AGGGACAGGTGCGGCCCCGCCCGAGTTCTCGAATTCCGTGGGCACTCCCC
TGGTGGAGGGACTCGTTCTGGTGGATGATCTGCTCACAGGGGCTGGTCTG
AGGGACCGCGTGAAAATAATCTGCAGCGGGAAGGTACTCAGGAAATTT
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