mRNA_H-elongata_contig18246.4894.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18246.4894.1
Unique NamemRNA_H-elongata_contig18246.4894.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig18246.4894.1 vs. uniprot
Match: D7FKN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKN2_ECTSI)

HSP 1 Score: 153 bits (386), Expect = 3.430e-36
Identity = 97/173 (56.07%), Postives = 116/173 (67.05%), Query Frame = 1 
Query:    4 AQTLRDSLEAQVRSWKAKAEAAERRAAAERERAHGLEAGAKNAFGQEIERARQAQESSVREVTKKAESDRKAHEQEKELLQENHRDHLARVHQEKKGVIAAERQRWQQEMQELRAKANIKAEEAATRATVERTEAVRCLRLEHDAEMRKAGSDILRLERQIRRLQVDPTPMAL 522
            AQT +DSL+AQ+RSWKAKAE AERRA  ERE+  GLEAG K    QE+E+A                 DR  H +E E LQE HR  L RVHQ+KK +  A R++W++EMQELR +A  KAE+AATRAT ER+EA+R LRL HD EMRKAG DILRLER+ RR Q    P  +
Sbjct:  309 AQTAQDSLDAQLRSWKAKAETAERRATEEREKRRGLEAGVKGVLAQEVEKAXXXXXXXXXXXXXXXXXDRATHAEEIERLQEEHRAGLLRVHQDKKSLFEAARRQWEKEMQELRREAVAKAEDAATRATAERSEALRRLRLAHDTEMRKAGRDILRLEREARRSQQQQEPSGM 481
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BLAST of mRNA_H-elongata_contig18246.4894.1 vs. uniprot
Match: A0A6H5JD13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD13_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 1.210e-29
Identity = 92/173 (53.18%), Postives = 107/173 (61.85%), Query Frame = 1 
Query:    4 AQTLRDSLEAQVRSWKAKAEAAERRAAAERERAHGLEAGAKNAFGQEIERARQAQESSVREVTKKAESDRKAHEQEKELLQENHRDHLARVHQEKKGVIAAERQRWQQEMQELRAKANIKAEEAATRATVERTEAVRCLRLEHDAEMRKAGSDILRLERQIRRLQVDPTPMAL 522
            AQ  +DSL+AQVRSWKAK E AERRAA ERE+  GLEAG K A  QE                              E LQE HR  L RVHQ+KK +  A R++W++EMQELR +A  KAE+AATRAT ER+EA+R LRL HD EMRKAG DILRLER+ RR Q    P  +
Sbjct:  671 AQAAQDSLDAQVRSWKAKTETAERRAAEEREKRKGLEAGVKGALAQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTERLQEEHRAALLRVHQDKKSLFEAARRKWEKEMQELRREAVAKAEDAATRATAERSEALRRLRLAHDTEMRKAGRDILRLEREARRCQQQQEPSGM 843
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18246.4894.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FKN2_ECTSI3.430e-3656.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JD13_9PHAE1.210e-2953.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18246contigH-elongata_contig18246:177..3272 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1830
Cds size279
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930050.0713592-UTR-H-elongata_contig18246:176..3031622930050.0713592-UTR-H-elongata_contig18246:176..303Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18246 177..303 +
1691679261.275358-UTR-H-elongata_contig18246:176..3031691679261.275358-UTR-H-elongata_contig18246:176..303Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18246 177..303 +
1622930050.08767-UTR-H-elongata_contig18246:662..6731622930050.08767-UTR-H-elongata_contig18246:662..673Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18246 663..673 +
1691679261.282551-UTR-H-elongata_contig18246:662..6731691679261.282551-UTR-H-elongata_contig18246:662..673Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18246 663..673 +
1622930050.098937-UTR-H-elongata_contig18246:688..7961622930050.098937-UTR-H-elongata_contig18246:688..796Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18246 689..796 +
1691679261.289934-UTR-H-elongata_contig18246:688..7961691679261.289934-UTR-H-elongata_contig18246:688..796Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18246 689..796 +
1622930050.113902-UTR-H-elongata_contig18246:1042..11261622930050.113902-UTR-H-elongata_contig18246:1042..1126Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18246 1043..1126 +
1691679261.306626-UTR-H-elongata_contig18246:1042..11261691679261.306626-UTR-H-elongata_contig18246:1042..1126Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18246 1043..1126 +
1622930050.1541443-UTR-H-elongata_contig18246:2051..32721622930050.1541443-UTR-H-elongata_contig18246:2051..3272Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18246 2052..3272 +
1691679261.34058-UTR-H-elongata_contig18246:2051..32721691679261.34058-UTR-H-elongata_contig18246:2051..3272Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18246 2052..3272 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930050.1262321-CDS-H-elongata_contig18246:1126..11351622930050.1262321-CDS-H-elongata_contig18246:1126..1135Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18246 1127..1135 +
1691679261.318812-CDS-H-elongata_contig18246:1126..11351691679261.318812-CDS-H-elongata_contig18246:1126..1135Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18246 1127..1135 +
1622930050.138043-CDS-H-elongata_contig18246:1781..20511622930050.138043-CDS-H-elongata_contig18246:1781..2051Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18246 1782..2051 +
1691679261.3284018-CDS-H-elongata_contig18246:1781..20511691679261.3284018-CDS-H-elongata_contig18246:1781..2051Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18246 1782..2051 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18246.4894.1prot_H-elongata_contig18246.4894.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18246 1127..2051 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18246.4894.1

>prot_H-elongata_contig18246.4894.1 ID=prot_H-elongata_contig18246.4894.1|Name=mRNA_H-elongata_contig18246.4894.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
MQELRAKANIKAEEAATRATVERTEAVRCLRLEHDAEMRKAGSDILRLER
QIRRLQVDPTPMALFFVFCLSDFPARPCARAFEARHRKARYV*
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mRNA from alignment at H-elongata_contig18246:177..3272+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18246.4894.1 ID=mRNA_H-elongata_contig18246.4894.1|Name=mRNA_H-elongata_contig18246.4894.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3096bp|location=Sequence derived from alignment at H-elongata_contig18246:177..3272+ (Himanthalia elongata Himel1 dioecious)
CAGGCGCAAACACTGCGAGACTCGCTCGAGGCTCAGGTCCGATCGTGGAA
GGCCAAAGCCGAGGCGGCAGAAAGGCGCGCAGCGGCGGAGCGAGAGAGGG
CGCATGGCCTGGAGGCCGGGGCTAAGAGTGATATTTCCAAGGCATGCGAG
CTTGCGCGCGCGCAGCAGATGTATCCCGGAGTCAGACCTAGAATAAATAA
GATGTGGTCGCCCTGGATGGCTTGATCTCTCTGTAGACCCATTGGCGCAG
ATTTTTTCGAACCGTGATGTGCAACATTTTTTTTGAAGCGTTTATTTTTT
ATTTAATCTTCGCGAACTTGTCGCGGCGCGGCAATACCACCACAGCGGAA
AATGTTGCGCTGCTGTTGTGTACCACGAGGGCCAATCCTCTGACCCATCC
CTGGTAGTGTTGGTAGTGTTTTGGGTATGCGTCTCGCGGGAAAGCAACCC
TTCTCGACGAAAAAGTGTTGGTTCGGCACGGCACAGACGCGTTCGGCGTT
TGCGTTCCTTAGCAGGAGATAGAAAGGGCGCGTCAAGCCCAGGAGAGTTC
CGTCCGTGAAGTCACGAAAAAAGCGGAGAGCGATAGAAAGGCGCACGAGC
AGGAGAAGGAGCTCCTTCAGGTGTGAAGATGTTTTCGCGCGATGATAGAA
TACCAGGAAGGATCTTAACGCCTCCAACCGAAAAACCCTGTCGGATATCC
TACGATAGAGGAAAATATGTGTAAGATGATTAGCCAACACTGTTTTCCCC
CACGAGTACTATCGAGGCGAACACCGAATGAAAGCCTTTCCTGCGATGTT
AAAATAAGTTTTGAGGCCCGCCGCTGTGTCTGCATGGATCTTCTGTTGGT
GCTGTCTCTTCGATAGGAGAATCACAGAGATCACCTCGCGCGCGTTCACC
AGGAGAAGAAGGGCGTCATTGCGGCGGAACGTCAGAGGTGGCAGCAAGAG
ATGCAAGAGGTTGAATACTAGGGCCCGAGTCGTGATACTTTCGCCTGTTA
GAGGGGGGTATGCACACATAGACCCATGCTCTAATCGAGGAATATGGTAC
TCGGGAACACCGTCCCCGGGGTTCCTATTTTGAAACTACGGAAAACAGGG
GTCGCGTTTGTACTCTTAGCCACCACTCTTCGCATACCGTGAGGGCACCT
CGTACGATGCTCCACTTTGCAGCATGTTGCCCAGCTCGAAGATTTGTATC
GCTCCGACATTGCGTCGAAGGAGATATCCCCTGTCCACTAATTATTCATA
GAGCAGCATTCCAACGTTGAAAAGGCGCACTCTAGTCACGGCGCTTCGCC
GTAGCGAGTCGGCAACGCGGCCTCTATGAAATTATGTTTGATTGCCTATT
CAAGGACATCGACGCCGCGCTGCGCACCGTTCCATCTCACACGGGTGCTC
CATTTTCGACTCGAGCGCCCTTTTTCCATGCCTGACCGATATAAAAATGT
ATTATAGCTTGAGTGCTTATCCCATCGCACGCACGATCTCTTTGGTCTCT
CCGATCGCGGGATGTCCCCCGCCACCTCCTTTACCTGCCCAATGCCCGCC
CCTTCTTCCACCCCAAACGTGCTCGCCTAATCAAATCGCAATTGACGGCC
ACAAGTTACGGGCGAAAGCGAACATCAAAGCAGAAGAGGCAGCGACGCGT
GCCACCGTGGAGCGCACGGAGGCCGTTCGATGCCTGCGTCTGGAGCACGA
CGCGGAGATGAGGAAAGCGGGGAGCGACATTCTTCGGTTGGAACGGCAAA
TCCGCCGCCTTCAGGTGGATCCGACGCCGATGGCGCTCTTTTTTGTTTTC
TGCCTGAGCGATTTTCCTGCACGGCCCTGTGCACGCGCATTTGAGGCCCG
GCATCGCAAAGCAAGATATGTTTGAGCATACCGCGAGGAAGTTTCGTGAA
ACAAGGCCCAAAAGAGAGCCAAGGTCTCCAAGCAACCATTCAGCACGTTT
TGTTGTTTTGTTGCTTCTCGGTTCGCGAAGAGTCTTTTATGGAAAAGTCT
TGAAATACTCGATGAATGGGTGTGTGACCACGCCAGGATTGCGCAGACAG
CAGTGCCGTCCTGCTTGCGGCGGCCTATTGCTCCGAAAATAGCGGAGTGA
AAGCCCTGCTAGAATGGCTGTGGGTTCGACGATTGCCACCATTGGCGCTG
TCGCCCTTGTCTAGAGAGAAATGCACCACTCCGGAGGTGGTTTCTGCGTT
GACGGGACGGAGGCTACATCTTCTTCATCATTTCGTCGCAATTTTGGTCC
TGCTGCGCAAACGGAGAGTAGGCCTGCCTCGCAATGTACGGTAATACAGC
TGCGGCAGCCTTCATAGCTATCAAGATCAGGGCTTTGAAATAATCCCCGT
AATGCTTAATGCTTGCGGTTTTTGTTTTTTTATTCCACCCGTTTTTTCTC
TTTCCTCACTTTCCGTCGCCGATCCTAGGCCGAACGTGGAGGGTCGCGGT
CCGATACTGCCACCGTCGACGCGGCAAGGACATCACCACAGCGTCCTCCT
ATAAGTCTCAGCGACGTCTTTGACAAAGCGGAACCTCACGAGGATGGACA
GAACCGTTGCGAAGTGGGCGTGGAGGATTAAGAAGTCAAAGAGGCGTTTT
TACTTAATAATAACTGTGGCTAACGTGGTTACCAATGAGATTTTACTCGG
ACAACGAAGTCCATGTTAAACACATACTCTTCTATTTTTTGTTTATTCTT
TCTCTCGGCCAATGCTGCTCAACATGGCCGGTTCCATAATTTTACGTCAC
CTCCCGTCACGCCTGTTGATCGAAGGGGCCTTCTCCTCAGTTACTTGGCC
TACCACGCCTACGGTACGACCTTTTTATCGCGATGCAGGCTAGGCCCGAC
TCTAGACATCGTAAGCCAATTATGGTGGGCGAATATTACTCTCGGGTTCG
CGCTTTCCGACTGTTGTTCCGTCCCGGCGCGGTTCAGCTGTCAGTAACCG
AGATGATAAGTTGTTCAGCGATCCTGAAGAAAAATCTCAGAAAATTCAGG
GCGGGAGAGCCTCATCGGCAAAGAATAAGAGTAAGTAAGTATAAGCGTAG
TACCGGTATATATTTGACACCGACTGAAAGCTGAGGATTGTTGAGC
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Coding sequence (CDS) from alignment at H-elongata_contig18246:177..3272+

>mRNA_H-elongata_contig18246.4894.1 ID=mRNA_H-elongata_contig18246.4894.1|Name=mRNA_H-elongata_contig18246.4894.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig18246:177..3272+ (Himanthalia elongata Himel1 dioecious)
ATGCAAGAGATGCAAGAGTTACGGGCGAAAGCGAACATCAAAGCAGAAGA
GGCAGCGACGCGTGCCACCGTGGAGCGCACGGAGGCCGTTCGATGCCTGC
GTCTGGAGCACGACGCGGAGATGAGGAAAGCGGGGAGCGACATTCTTCGG
TTGGAACGGCAAATCCGCCGCCTTCAGGTGGATCCGACGCCGATGGCGCT
CTTTTTTGTTTTCTGCCTGAGCGATTTTCCTGCACGGCCCTGTGCACGCG
CATTTGAGGCCCGGCATCGCAAAGCAAGATATGTTTGATTACGGGCGAAA
GCGAACATCAAAGCAGAAGAGGCAGCGACGCGTGCCACCGTGGAGCGCAC
GGAGGCCGTTCGATGCCTGCGTCTGGAGCACGACGCGGAGATGAGGAAAG
CGGGGAGCGACATTCTTCGGTTGGAACGGCAAATCCGCCGCCTTCAGGTG
GATCCGACGCCGATGGCGCTCTTTTTTGTTTTCTGCCTGAGCGATTTTCC
TGCACGGCCCTGTGCACGCGCATTTGAGGCCCGGCATCGCAAAGCAAGAT
ATGTTTGA
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