mRNA_H-elongata_contig181486.4859.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig181486.4859.1
Unique NamemRNA_H-elongata_contig181486.4859.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig181486.4859.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 9.760e-12
Identity = 45/167 (26.95%), Postives = 88/167 (52.69%), Query Frame = 1 
Query:   13 STSNLLGRSLILCAPFDVYFAA-----NNSNIKRALSSMEWLIARELHSLMDPAAKVTTCIQGGEDGYCSRSICLMTQLLTMLENKE----------------LEIMPA------PGGGDISPKLVTASELTSAAKTYLEVVVHQMKIRGLGAPGKKPEKIALLLDP 432
            S   ++GR L L  P   YF       +N  +KR LSS EW++  E+ SL+   +++T  IQG +D + S+++ L+ +++ ML+++                 L+++P       P  G +S + +   +LT+ A+   +V++  M+ +G+G   ++ E+++ LLDP
Sbjct:  124 SQFKMMGRLLTLKKPISEYFRRLPQIPSNKQLKRKLSSHEWIVTNEVCSLLGDVSEITIRIQGAQDTHISQAMFLIHEVMEMLKDETHPIRTANAIVTPPPPALDVIPTEEEENQPQKGGVSTEDIHVEDLTTEAQGVRKVLLEVMEEKGVGKALQRVERLSALLDP 290
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig181486.4859.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KDJ6_9PHAE9.760e-1226.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig181486contigH-elongata_contig181486:608..1084 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size477
Cds size477
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930046.6551762-CDS-H-elongata_contig181486:607..10841622930046.6551762-CDS-H-elongata_contig181486:607..1084Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig181486 608..1084 -
1691679260.0292442-CDS-H-elongata_contig181486:607..10841691679260.0292442-CDS-H-elongata_contig181486:607..1084Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig181486 608..1084 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig181486.4859.1prot_H-elongata_contig181486.4859.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig181486 608..1084 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig181486.4859.1

>prot_H-elongata_contig181486.4859.1 ID=prot_H-elongata_contig181486.4859.1|Name=mRNA_H-elongata_contig181486.4859.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=159bp
LRFASTSNLLGRSLILCAPFDVYFAANNSNIKRALSSMEWLIARELHSLM
DPAAKVTTCIQGGEDGYCSRSICLMTQLLTMLENKELEIMPAPGGGDISP
KLVTASELTSAAKTYLEVVVHQMKIRGLGAPGKKPEKIALLLDPTTIECG
RDVCVTGGP
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mRNA from alignment at H-elongata_contig181486:608..1084-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig181486.4859.1 ID=mRNA_H-elongata_contig181486.4859.1|Name=mRNA_H-elongata_contig181486.4859.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=477bp|location=Sequence derived from alignment at H-elongata_contig181486:608..1084- (Himanthalia elongata Himel1 dioecious)
CTCAGATTCGCATCGACCTCCAACCTCTTGGGGCGTTCCCTCATTCTGTG
CGCGCCCTTCGATGTGTACTTCGCCGCGAATAACTCCAACATCAAGCGCG
CTCTTAGTTCCATGGAGTGGTTGATTGCGCGCGAGCTCCACAGCCTGATG
GACCCTGCAGCAAAGGTCACCACTTGCATCCAAGGCGGAGAAGACGGCTA
CTGCAGCCGTTCAATCTGTTTGATGACGCAGCTCCTCACAATGCTCGAGA
ACAAGGAGCTAGAGATCATGCCAGCGCCTGGCGGTGGGGACATATCGCCG
AAGCTCGTCACGGCATCTGAGCTGACCTCTGCTGCGAAGACCTACTTGGA
GGTCGTCGTACATCAGATGAAGATTCGCGGCCTAGGCGCTCCCGGCAAAA
AACCCGAAAAGATCGCCCTATTACTTGATCCTACCACAATAGAGTGCGGG
CGTGATGTTTGTGTCACGGGCGGACCC
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Coding sequence (CDS) from alignment at H-elongata_contig181486:608..1084-

>mRNA_H-elongata_contig181486.4859.1 ID=mRNA_H-elongata_contig181486.4859.1|Name=mRNA_H-elongata_contig181486.4859.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=954bp|location=Sequence derived from alignment at H-elongata_contig181486:608..1084- (Himanthalia elongata Himel1 dioecious)
CTCAGATTCGCATCGACCTCCAACCTCTTGGGGCGTTCCCTCATTCTGTG
CGCGCCCTTCGATGTGTACTTCGCCGCGAATAACTCCAACATCAAGCGCG
CTCTTAGTTCCATGGAGTGGTTGATTGCGCGCGAGCTCCACAGCCTGATG
GACCCTGCAGCAAAGGTCACCACTTGCATCCAAGGCGGAGAAGACGGCTA
CTGCAGCCGTTCAATCTGTTTGATGACGCAGCTCCTCACAATGCTCGAGA
ACAAGGAGCTAGAGATCATGCCAGCGCCTGGCGGTGGGGACATATCGCCG
AAGCTCGTCACGGCATCTGAGCTGACCTCTGCTGCGAAGACCTACTTGGA
GGTCGTCGTACATCAGATGAAGATTCGCGGCCTAGGCGCTCCCGGCAAAA
AACCCGAAAAGATCGCCCTATTACTTGATCCTACCACAATAGAGTGCGGG
CGTGATGTTTGTGTCACGGGCGGACCCCTCAGATTCGCATCGACCTCCAA
CCTCTTGGGGCGTTCCCTCATTCTGTGCGCGCCCTTCGATGTGTACTTCG
CCGCGAATAACTCCAACATCAAGCGCGCTCTTAGTTCCATGGAGTGGTTG
ATTGCGCGCGAGCTCCACAGCCTGATGGACCCTGCAGCAAAGGTCACCAC
TTGCATCCAAGGCGGAGAAGACGGCTACTGCAGCCGTTCAATCTGTTTGA
TGACGCAGCTCCTCACAATGCTCGAGAACAAGGAGCTAGAGATCATGCCA
GCGCCTGGCGGTGGGGACATATCGCCGAAGCTCGTCACGGCATCTGAGCT
GACCTCTGCTGCGAAGACCTACTTGGAGGTCGTCGTACATCAGATGAAGA
TTCGCGGCCTAGGCGCTCCCGGCAAAAAACCCGAAAAGATCGCCCTATTA
CTTGATCCTACCACAATAGAGTGCGGGCGTGATGTTTGTGTCACGGGCGG
ACCC
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