mRNA_H-elongata_contig18061.4808.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18061.4808.1
Unique NamemRNA_H-elongata_contig18061.4808.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig18061.4808.1 vs. uniprot
Match: B7ZGN0_9PHAE (DSBA oxidoreductase n=1 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGN0_9PHAE)

HSP 1 Score: 332 bits (850), Expect = 2.030e-113
Identity = 155/214 (72.43%), Postives = 188/214 (87.85%), Query Frame = 1
Query:    1 QVFSDNVCPWCFVGKRNLESAMKQFTATQPTHV---PPVFNISWKPFFLNIESPETSDVPIKEYLERKYGQHSGSRMATALERAGQSTGIKFNNERRVHNTIQSHRLVRLAEEQGKSGDMIEQLFQGYFEEGRNIADVDVLLELAQKAGVSCTKEFIHGSEGKREVLHEYKQGVQSSGITGVPYFVFSREGSKDVLPLSGAQPPETFIEVFEAL 633
            +V SDNVCPWC+VGKRNLESAMKQF  +QPT     PPVF++ WKPFFLN++SPETS+ PI+EYLE+KYG+ +GSRMA ALERAG+STGI FNN+RRVHNTI+SHRLVRLA++Q K GDMIEQLF GYFEEG+NIAD DVLLE+AQKAGV CTKE++ G EG++EVL+EY++GVQ+ G++GVPY++ SREGSK  +PLSGAQPPE F+E FEAL
Sbjct:    7 KVISDNVCPWCYVGKRNLESAMKQFATSQPTEKEQEPPVFDVRWKPFFLNVKSPETSEEPIQEYLEKKYGKGAGSRMAVALERAGKSTGINFNNDRRVHNTIRSHRLVRLADQQEKGGDMIEQLFHGYFEEGKNIADSDVLLEIAQKAGVECTKEYLEGKEGQQEVLNEYQKGVQTQGVSGVPYYIISREGSKATVPLSGAQPPEAFVEAFEAL 220          
BLAST of mRNA_H-elongata_contig18061.4808.1 vs. uniprot
Match: A0A6H5KYU3_9PHAE (DSBA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYU3_9PHAE)

HSP 1 Score: 319 bits (818), Expect = 1.460e-108
Identity = 147/213 (69.01%), Postives = 182/213 (85.45%), Query Frame = 1
Query:    1 QVFSDNVCPWCFVGKRNLESAMKQFTATQP-THVPPVFNISWKPFFLNIESPETSDVPIKEYLERKYGQHSGSRMATALERAGQSTGIKFNNERRVHNTIQSHRLVRLAEEQGKSGDMIEQLFQGYFEEGRNIADVDVLLELAQKAGVSCTKEFIHGSEGKREVLHEYKQGVQSSGITGVPYFVFSREGSKDVLPLSGAQPPETFIEVFEALS 636
            ++FSDNVCPWCFVGKRNLE+AMKQF A +P T  PPVF++ WKPFFLNIE+PETS++PI EYLE+KYG+ +GSRMA +L  AG++TGI+FNN+R+VHNTI+SHRLVR A+ QGK G+MI+QLF  YFE+GRNIADVDVLLELA+KAGV CTK+++ G EG+ EV+ EYK G+ + GI+GVPYF+ SREGSK  +PLSG QPP  F+E FEALS
Sbjct:    7 KIFSDNVCPWCFVGKRNLETAMKQFAAREPSTQSPPVFDVRWKPFFLNIEAPETSELPITEYLEKKYGKGAGSRMAASLAMAGEATGIRFNNDRKVHNTIRSHRLVRFADGQGKGGEMIDQLFHAYFEQGRNIADVDVLLELAEKAGVECTKDYLEGKEGQEEVISEYKHGIHNHGISGVPYFIVSREGSKATVPLSGGQPPAAFVEAFEALS 219          
BLAST of mRNA_H-elongata_contig18061.4808.1 vs. uniprot
Match: A0A835YGU7_9STRA (Protein disulfide isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGU7_9STRA)

HSP 1 Score: 191 bits (484), Expect = 8.180e-58
Identity = 98/209 (46.89%), Postives = 136/209 (65.07%), Query Frame = 1
Query:   10 SDNVCPWCFVGKRNLESAMKQFTATQPTHVPPVFNISWKPFFLNIESPETSDVPIKEYLERKYGQHSGSRMATALERAGQSTGIKFNNERRVHNTIQSHRLVRLAEEQGKSGDMIEQLFQGYFEEGRNIADVDVLLELAQKAGVSC-TKEFIHGSEGKREVLHEYKQGVQSSGITGVPYFVFSREGSKDVLPLSGAQPPETFIEVFEAL 633
            S  VCPWCF+GKR LE+A+++     P  V      +WKPFFL+  SP+ S +PI  +L +KYG  +G+RMA +L  AG+  GIKF  +R V NTI SHRLV LA +QGK   +IE LF GYFE+G  ++ VD L+ +A+ AG+S   + ++   E +  V+ E     +  GITGVP+FV +R+G+K+ L LSGAQP + F E F+AL
Sbjct:   17 SPPVCPWCFIGKRRLEAAIRE-RGLGPKDV----QTTWKPFFLDANSPKDSGIPIGVHLRQKYGAQAGARMAASLAAAGEENGIKFKEDRTVQNTIMSHRLVHLAGKQGKQDAVIEALFSGYFEQGAKLSSVDTLVRIAETAGISGDVRAYLESGEDEDVVMREAFDSARRLGITGVPFFVIARDGNKERLTLSGAQPVDVFDEAFDAL 220          
BLAST of mRNA_H-elongata_contig18061.4808.1 vs. uniprot
Match: B3SBG0_TRIAD (DSBA domain-containing protein n=2 Tax=Trichoplax TaxID=10227 RepID=B3SBG0_TRIAD)

HSP 1 Score: 149 bits (377), Expect = 1.270e-41
Identity = 88/217 (40.55%), Postives = 129/217 (59.45%), Query Frame = 1
Query:    4 VFSDNVCPWCFVGKRNLESAMKQFTATQPTHVPPVFNISWKPFFLNIESPETSDVPIKEYLERKYGQH--SGSRMATA-LERAGQSTGIKFNNERRVHNTIQSHRLVRLAEEQGKSGDMIEQLFQGYFEEGRNIADVDVLLELAQKAGVSC--TKEFIHGSEGKREVLHEYKQGVQSSGITGVPYFVFSREGSKD--VLPLSGAQPPETFIEVFEAL 633
            + SD +CPWCFVGKR+LE+AMK F +T        F+I WKPF LN  +PE   +P+ EYL ++YGQ     +R  T+ L  AG+  G+ F++ R+  N+I+SH L+  A  + K   + E LFQ YF +G NI DV VLL+ A++ G+     K+ +   E +++++ E K   Q+  I GVP+FV S  G +    +PL G QP E F  VF ++
Sbjct:   12 ITSDTMCPWCFVGKRHLETAMKDFESTFE------FDIEWKPFLLNSNTPEEG-IPVLEYLAQRYGQQVADDARNGTSSLIAAGRKVGLNFDSNRKFVNSIRSHCLLDYARTEKKQNQLAELLFQRYFIDGNNINDVKVLLDCAKEIGLKAEEAKKSLQDKERRKKIIEEAKVATQNQ-IHGVPHFVISLIGDQHGKAMPLHGCQPIEMFRRVFTSI 220          
BLAST of mRNA_H-elongata_contig18061.4808.1 vs. uniprot
Match: A0A433CYQ7_9FUNG (DSBA domain-containing protein n=3 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433CYQ7_9FUNG)

HSP 1 Score: 143 bits (361), Expect = 4.730e-39
Identity = 89/224 (39.73%), Postives = 128/224 (57.14%), Query Frame = 1
Query:    4 VFSDNVCPWCFVGKRNLESAMKQFTATQPTHVPPVFNISWKPFFLNIESPETSDVPIKEYLERKYGQHSGSRMATALERAG--------QSTG----IKFNNERRVHNTIQSHRLVRLAEEQGKSGDMIEQLFQGYFEEGRNIADVDVLLELAQKAGV--SCTKEFIHGSEGKREVLHEYKQGVQSSGITGVPYFVFSREGSKDVLPLSGAQPPETFIEVFEAL 633
            + SD +CPWCFVGKR LE+A+ Q     P      F   W P+ L+   P+ S      Y+ +K+G+    +M   +E  G        QSTG    I FN   RV NT  SHRLV  A +QGK  +M+E+LF+ YFE+ R++ADV+ L E+A+K G+  + T  F+   EG+ EV  E  + +  S I+GVP+F+  +  +     LSGAQPPETF+E+F+ +
Sbjct:   24 IVSDTICPWCFVGKRRLETAIAQAIKAHPGTK---FETVWHPYELDPTLPKESVDKHANYV-KKFGEERMKQMLPYMENIGRLLIASSPQSTGKAENISFNFGGRVGNTTDSHRLVWWATKQGKQDEMVEELFRHYFEQERDVADVETLAEIARKVGLDRNATLAFLQSDEGRAEVKAEIYRNMGKS-ISGVPHFMIDKRYT-----LSGAQPPETFVELFDEI 237          
BLAST of mRNA_H-elongata_contig18061.4808.1 vs. uniprot
Match: A0A2I0X9A3_9ASPA (DSBA domain-containing protein n=2 Tax=Epidendroideae TaxID=158332 RepID=A0A2I0X9A3_9ASPA)

HSP 1 Score: 140 bits (353), Expect = 4.210e-38
Identity = 86/218 (39.45%), Postives = 121/218 (55.50%), Query Frame = 1
Query:    4 VFSDNVCPWCFVGKRNLESAMK----QFTATQPTHVPPVFNISWKPFFLNIESPETSDVPIKEYLERKYGQHSGSRMATALERAGQSTGIKFNNERRVHNTIQSHRLVRLAEEQG--KSGDMIEQLFQGYFEEGRNIADVDVLLELAQKAGVSCTKEFIHG-SEGKREVLHEYKQGVQSSGITGVPYFVFSREGSKDVLPLSGAQPPETFIEVFEALS 636
            V SD VCPWCFVGK+NLE AM     QF           F + W PFFLN  +P+   +   E+ + K+G      + + +    +  G +++      NT+ SHRL+  A  QG  K   ++E+LFQ YF +G+ I D  VLL+ AQK G+    E I+  ++G +EV  E ++   SS I+GVPYFVF+  GS     LSG QPPE F+  F+A+S
Sbjct:   18 VSSDTVCPWCFVGKKNLEKAMSLAKDQFN----------FEVKWHPFFLNPNAPKEGILK-SEFYKNKFGSTQYEHIISRMREVFRGLGFEYDTAGMTGNTLDSHRLISFAANQGYEKQNALVEELFQNYFIQGKFIGDKQVLLDAAQKVGIEGAAELINDPNKGLKEVNEELEK--YSSRISGVPYFVFN--GS---FQLSGGQPPEAFLHAFQAVS 217          
BLAST of mRNA_H-elongata_contig18061.4808.1 vs. uniprot
Match: A0A809RMA1_9PROT (Thiol oxidoreductase n=1 Tax=Candidatus Desulfobacillus denitrificans TaxID=2608985 RepID=A0A809RMA1_9PROT)

HSP 1 Score: 136 bits (343), Expect = 1.260e-36
Identity = 81/209 (38.76%), Postives = 120/209 (57.42%), Query Frame = 1
Query:    4 VFSDNVCPWCFVGKRNLESAMKQFTATQPTHVPPVFNISWKPFFLNIESPETSDVPIKEYLERKYG-QHSGSRMATALERAGQSTGIKFNNER--RVHNTIQSHRLVRLAEEQGKSGDMIEQLFQGYFEEGRNIADVDVLLELAQKAGVS--CTKEFIHGSEGKREVLHEYKQGVQSSGITGVPYFVFSREGSKDVLPLSGAQPPETFI 615
            V SD VCPWCF+GKR LE+A+++    +P  VP    I W PFFLN ++PE  + P + +LE+K+G     +++   +  AG+S GI+F  ER  R  NT+++HRL+  A+ QG +  ++E+LF   F EG+++ D  VL  LA   G     T  F+ G EG   V   ++   Q  GITGVP+F+ +         + GAQPPE  +
Sbjct:    8 VVSDVVCPWCFIGKRRLEAALRELKQERPDVVP---RIRWLPFFLNPDTPEAGE-PYRPFLEKKFGGPEKLAQIWAQIAEAGRSAGIEFAFERIERRANTLKAHRLIHRAQTQGSADALVERLFSAQFVEGQDVGDAAVLARLAAACGEEEGQTLAFLRGEEGAAAVRAGFED-AQRMGITGVPFFILAGR-----FGVGGAQPPEPML 206          
BLAST of mRNA_H-elongata_contig18061.4808.1 vs. uniprot
Match: A0A839SRW3_9HYPH (Putative DsbA family dithiol-disulfide isomerase n=1 Tax=Limibacillus halophilus TaxID=1579333 RepID=A0A839SRW3_9HYPH)

HSP 1 Score: 136 bits (342), Expect = 1.730e-36
Identity = 84/216 (38.89%), Postives = 122/216 (56.48%), Query Frame = 1
Query:    4 VFSDNVCPWCFVGKRNLESAMKQFTATQPTHVPPVFNISWKPFFLNIESPETSDVPIKEYLERKYGQHSG-SRMATALERAGQSTGIKFNNER--RVHNTIQSHRLVRLAEEQGKSGDMIEQLFQGYFEEGRNIADVDVLLELAQKAGVSCTK--EFIHGSEGKREVLHEYKQGVQSSGITGVPYFVFSREGSKDVLPLSGAQPPETFIEVFEALS 636
            +FSD +CPWCF+GKR LE A++        H        W+ F LN E P ++ +   EYLERK+G   G S++ + +E  G+S  + F  +R  R  NT+ SHRLVR A   GK  +++E+LFQ YF EG NI D   L E+A + G+   +  EF+ G + K E+L E     +  GI GVP F+F    +     +SGAQ PE  ++V ++L+
Sbjct:    5 IFSDTICPWCFIGKRRLEKAIESRGEEVEIH--------WRAFQLNPEMP-SAGMDRTEYLERKFGGPEGASQVYSRIEEVGRSEALNFAFDRISRTPNTVDSHRLVRFATNIGKQEELVERLFQAYFTEGANIGDRKQLAEIAVEVGLDRAEVEEFLAGEDLKEEILAE-DLFARQQGIQGVPCFIFDGRYA-----VSGAQDPEVLMKVMDSLN 205          
BLAST of mRNA_H-elongata_contig18061.4808.1 vs. uniprot
Match: A0A532EK46_9BACT (DsbA family oxidoreductase n=1 Tax=Nitrospira sp. TaxID=70125 RepID=A0A532EK46_9BACT)

HSP 1 Score: 135 bits (341), Expect = 2.580e-36
Identity = 88/214 (41.12%), Postives = 117/214 (54.67%), Query Frame = 1
Query:    1 QVFSDNVCPWCFVGKRNLESAMKQFTATQPTHVPPVFNISWKPFFLNIESPETSDVPIKEYLERKYGQ-HSGSRMATALERAGQSTGIKFNNER--RVHNTIQSHRLVRLAEEQGKSGDMIEQLFQGYFEEGRNIADVDVLLELAQKAGVSCTK--EFIHGSEGKREVLHEYKQGVQSSGITGVPYFVFSREGSKDVLPLSGAQPPETFIEVFE 627
            +V+SD VCPWC+VGKR LE A+ Q              ISW+PF LN   P    +    YL+ K+G   +  RM   L  AG    I F  E+  R  NT  +HRLV  A +QGK  D++E +F+ YF EG+NI DV  L  +A +AG+  T+  EF+   +G  EV  E   G Q  GI GVPYFVF+       + +SGAQPP+ F+  F+
Sbjct:   11 EVYSDIVCPWCYVGKRRLERALAQLNDGAQAR------ISWRPFQLNPTMP-LDGMDRTAYLKAKFGSLEAFGRMEEQLLAAGADERIPFAFEKIERTPNTFAAHRLVWYAAQQGKQDDVVEAVFRAYFLEGKNIGDVKTLTHVAAEAGLDRTETEEFLESEKGVVEVKGEEAVGRQL-GIRGVPYFVFN-----GTVSISGAQPPDMFVSAFQ 211          
BLAST of mRNA_H-elongata_contig18061.4808.1 vs. uniprot
Match: A0A5N6QY07_9ROSI (DSBA domain-containing protein n=1 Tax=Carpinus fangiana TaxID=176857 RepID=A0A5N6QY07_9ROSI)

HSP 1 Score: 135 bits (341), Expect = 2.650e-36
Identity = 83/214 (38.79%), Postives = 121/214 (56.54%), Query Frame = 1
Query:    4 VFSDNVCPWCFVGKRNLESAMKQFTATQPTHVPPVFNISWKPFFLNIESPETSDVPIKEYLERKYGQHSGSRMATALERAGQSTGIKFNNERRVHNTIQSHRLVRLAEEQG--KSGDMIEQLFQGYFEEGRNIADVDVLLELAQKAGVSCTKEFIHG-SEGKREVLHEYKQGVQSSGITGVPYFVFSREGSKDVLPLSGAQPPETFIEVFEALS 636
            V SD VCPWCFVGKRNL+ A+   +  Q       F + W PF LN  +P+   +  KEY   K+G  S  R+   +    +S G+++N      NT+ SHRL+  A +QG  K  +++E+L  GYF +G+ I D + L+E A+K G+    EF+   + G +EV  E ++   S+ ITGVPYFV +      +  LSGAQPPE F+  FE ++
Sbjct:   18 VSSDTVCPWCFVGKRNLDKAIAAASKDQYG-----FEVRWHPFQLNPSAPKEG-INKKEYYRTKFGSES-ERLEARMSEVFKSHGLEYNLSGLTGNTLDSHRLMYFAGQQGLDKQHNLMEELSLGYFTQGKYIGDQEFLVESAKKVGIEGAAEFLQDPNNGLKEVNEELEK--YSAHITGVPYFVIN-----GIQKLSGAQPPEVFLRAFEVVT 217          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18061.4808.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B7ZGN0_9PHAE2.030e-11372.43DSBA oxidoreductase n=1 Tax=Laminaria digitata Tax... [more]
A0A6H5KYU3_9PHAE1.460e-10869.01DSBA domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A835YGU7_9STRA8.180e-5846.89Protein disulfide isomerase n=1 Tax=Tribonema minu... [more]
B3SBG0_TRIAD1.270e-4140.55DSBA domain-containing protein n=2 Tax=Trichoplax ... [more]
A0A433CYQ7_9FUNG4.730e-3939.73DSBA domain-containing protein n=3 Tax=Jimgerdeman... [more]
A0A2I0X9A3_9ASPA4.210e-3839.45DSBA domain-containing protein n=2 Tax=Epidendroid... [more]
A0A809RMA1_9PROT1.260e-3638.76Thiol oxidoreductase n=1 Tax=Candidatus Desulfobac... [more]
A0A839SRW3_9HYPH1.730e-3638.89Putative DsbA family dithiol-disulfide isomerase n... [more]
A0A532EK46_9BACT2.580e-3641.12DsbA family oxidoreductase n=1 Tax=Nitrospira sp. ... [more]
A0A5N6QY07_9ROSI2.650e-3638.79DSBA domain-containing protein n=1 Tax=Carpinus fa... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18061contigH-elongata_contig18061:2666..7001 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score318.5
Seed ortholog evalue2.3e-84
Seed eggNOG ortholog2880.D8LHI5
EggNOG free text desc.DSBA-like thioredoxin domain
EggNOG OGs2QTH7@2759,COG2761@1
Ec32 ortholog descriptionProtein disulfide isomerase
Ec32 orthologEc-11_003940.1
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size639
Cds size639
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18061.4808.1prot_H-elongata_contig18061.4808.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18061 2666..7001 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930041.4373684-CDS-H-elongata_contig18061:2665..28721622930041.4373684-CDS-H-elongata_contig18061:2665..2872Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18061 2666..2872 -
1691679258.0600765-CDS-H-elongata_contig18061:2665..28721691679258.0600765-CDS-H-elongata_contig18061:2665..2872Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18061 2666..2872 -
1622930041.453508-CDS-H-elongata_contig18061:3155..34101622930041.453508-CDS-H-elongata_contig18061:3155..3410Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18061 3156..3410 -
1691679258.0703173-CDS-H-elongata_contig18061:3155..34101691679258.0703173-CDS-H-elongata_contig18061:3155..3410Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18061 3156..3410 -
1622930041.4726787-CDS-H-elongata_contig18061:6824..70011622930041.4726787-CDS-H-elongata_contig18061:6824..7001Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18061 6825..7001 -
1691679258.0779808-CDS-H-elongata_contig18061:6824..70011691679258.0779808-CDS-H-elongata_contig18061:6824..7001Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18061 6825..7001 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18061.4808.1

>prot_H-elongata_contig18061.4808.1 ID=prot_H-elongata_contig18061.4808.1|Name=mRNA_H-elongata_contig18061.4808.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=213bp
QVFSDNVCPWCFVGKRNLESAMKQFTATQPTHVPPVFNISWKPFFLNIES
PETSDVPIKEYLERKYGQHSGSRMATALERAGQSTGIKFNNERRVHNTIQ
SHRLVRLAEEQGKSGDMIEQLFQGYFEEGRNIADVDVLLELAQKAGVSCT
KEFIHGSEGKREVLHEYKQGVQSSGITGVPYFVFSREGSKDVLPLSGAQP
PETFIEVFEALS*
back to top

mRNA from alignment at H-elongata_contig18061:2666..7001-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18061.4808.1 ID=mRNA_H-elongata_contig18061.4808.1|Name=mRNA_H-elongata_contig18061.4808.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4336bp|location=Sequence derived from alignment at H-elongata_contig18061:2666..7001- (Himanthalia elongata Himel1 dioecious)
CAGGTATTTAGCGACAACGTGTGCCCATGGTGCTTTGTTGGGAAGCGTAA CCTGGAGAGCGCAATGAAGCAGTTCACAGCTACACAGCCGACTCATGTCC CGCCAGTTTTCAATATCAGCTGGAAGCCGTTCTTCCTCAACATCGAGTCA CCCGAGACGTCCGACGTCCCGATCAAGGTAGGTCCGGGGGAGCGTTGCGC GAGGAGACAAAGTACACTAGCCCAACTTTTGCTGCAGGAATAAATCCTCC ACGAAGACACGACTACGTTTCGTTCAGTGGAATCTAAAGTTGTAAACATA TTTTGTATCAACAGCGAATCATAGTACAAGTAGCTATTATTTGTAGTGTA TAAGTGTAGTACCGGGCCTCTCATAAGAAACCGAAATTCGGGTTCAGCTT CATTTTCCTATTTCGGGAGGAAACCCAGCATACTGTATACTTAAATTATT TTTCTTATTTTTTGCACAGAAAATGTGGTGTTTTTCTTTTATTTAAAAAC CTTGAACTCATTCCAACCCTCCGAACATCCACGCCTTCTTAGCGCCGTGA GAGGAGGTGCAGCCCAGGAGACCAACTATCGTCAGGCTCAAATGTGTACA TGGCTACATTTGAGCACAAAATCGTCGCCATCGTTAGTGGAGTGTTTCAT TCTCCCCGACAATGAATGTGTACACTATTAATATAATTTATTTACGTAAT ACGTAGTATTAATAATACATAACACGGCTGCCGAAATCCTCCAATGCTAT TATAACAATAGCGGTCCGTGAGGCGATTTTTGTGGGTGTGGAGAAAGCTG GGCTGAATGGCAGGGGTGGCCGGGGAGGGTGGGCAGGAGTGATGTTAGCC GTTTCTTAAATTATTGCCGAACCTGAGGCTCCGTAGTAGTTTCTTAAATT TTCAAACTTTTGAGGCTCCGTTTCTTATGTGTCTCTTACGAGAGTGCCGG TCCTCATGTATATAGTGCAAGTAGTAGTTATTATTATAGCTGCATTTGGC CCCTTGGGGATATCCGAATACAGGTAGGAGTCTAACCCGGTCGGTGCAGC GCTCCGAGCTCATCAAGTGGAGCGATGCCTGAATTCTTTGCTGGTTCTGC AATTGCGCAACATGCCATTACATCATCGCCTCGCCGACGGAGGTCCGAAT GATTCATGAAACTCGTCCCAACTTTTTACCGAATTCAGAACGCGGGTCAC GATTGTGGAACTTTGAATTTTAAGCGATCGTCGGATTCGACCCTGCTCTC TTTATATTTTAAAAAACAAATAAACTCATTAGAATCTTGCGAATAACGCC TTCTTAGCACCGTGGGAGGTATAGTCCAGGGGGCCAACTATTATCGTCGG GTTCCCTGCTCTCTATATTGCATTAGTATGGGAACCCGAAGTTCACAAAA CCGGTTTGGTTGCCCTGCACTCGACAATAATATGGTACTGCGATGGTGCT GCCCTTGACACCTCTCATCCACCAACTGCCCGCCATCAGTTTGTTTGTGT TCTTCCTATGGTTTTTGAGAAAATCTATTATAATAGGCCCAAACCATACC CATTATTAAACGCGATTGCCAATCCAGTTCGTTGTTTCATGGGACATAAT TTTTTAACTCAAAATTATGACCGACCCAATCGAAGATGACCCTACAGAAA AGAGACTATGCCGCTGACTGCAGTCGATGTGGTGTTCATTTTTTCAGTAC GAGGCGGAAATCTGGGAAGCTATCATCGATCCCGAGTGGGGATCATTGGG GCTGGAAATATATACTTCTCTTAATATATATATGAACTCACCCCAATCCT CCGAACATCCACACATTCTTAGCACCGTCAGATTATATCTTGCAGTCAAG GGGACAAACAACTATCGTCAGGTTCGAATGTGTACATTACTACCATGAAG CACAAAATTGTCGCATCTGATTAATCGTGTTCCGCAAGAGTAAATTCATC GGGTCGATGGTATAATGTCAGGGATCCCACTATTATCTCGTACACTTACA TTATGCATCATGTGGGAACTATGGCGCAAAACCAGAGCCTAGAGAGTGAA CAACTGTAGTTAGGAAGGGCCGTTAGGTATAGGTAAATGATCGGGGGTGC GGGAGAGAGAAATAAAATCGATATAGGCTTTACAGTAGTATACTGCACTA AATTCTTGTCCATCGCTTACCGCGGAGTAGTCGTCGGAGGTGCTGTACAT GTATCAGGTCGTCACAATGTACTTCACAAGAAGGATTGGGCAGAGTGCGG TAACTATATGGGCATCTTACTGGTAGCTCACGCCGGCAAGATACTGCTGA AGATCGTCGCTTGCTGCGTCAGTCAGTATTGCAAACGTGCGGGGATCCTG CCGAAGGAACAGATTGGTTTCCAACGGAACCGCTCTATGATCTTTATGGT GCTCGTAATTCATCGACTACAGGGGTTGGCGCGGATGAAATCATTCCGTT GCATATATGCTTTATCAACCTTGCAAAAGCGTACGACTCCATTCACCAAA CCCTACTCTGGAAAGTATTCGCCCGTTTTGGTATGCCACAAAACATTATC CCGGTGATTCGTTAATCCCGCGATGACATTCGGTGCTCGACGACAAGGTG TGCTCGGGGTTGTTCGCTGTGGTACAGGGTCTTATCAAGGATGCGTGCGT GTTCCCCTCATGTTCAACATATTCTTCGTGGTAGTTATAAACGTGGCTTG TAGGTGTTTCAAGGCGACAAAGAAAAAATGGGGGCAGGGGAGAGTAAAGG CCGGAGAACCAGTCCTGGCGACGTTGCTGCGGGGCATGCTATACGCCAAC AATGCCGGAGTCGTCTCGTATTCACCTGAACAACCCAGAAAGATTATGGG AACATTTTATCGCTTTCGTCTTTCGCTTTCATTGAACCTGCGGCTCTCCG TTCCACCGTTCTTCGATAGGCAGTCGTCCCGACAGCCACACGTAATTCGT CAACAACTATGTGCGTTGTCTTTTTCTTGATTTCTTGTTTGCTTACTTTC CTCAAATGAGCCACTTTTTCCAAGTATCCTTAAAAACATATAACCTCATT CATACCCACCGAACATCCACATGCACCATTACCATTTCCTTTGATATACA GAGCACGCTGAACGTTTTCCTTTCGGATCGTGTTTTTCTACCTTGTGACC ACGGGCTGGAGTTTGAAATCAGCTTATGTGATAATTCAATCCACTCAAAT CAATATATGTCTGGGTACTTTGTAGAGCCTGACAAGGATAAAACCGCGAC AAATATGCCAACCGGCCTTGCATATACCGGGCTGGTGTGGGTAGGTCGAA ATGGTCCCAGTCTGTATTGGTTGTTGGAGGATGGACAGTACGTGCTGTAG GAAAATCGTGGAAGATACAAGATACTCTTTACATGCTAACCGGAGCACGA TTCATTGAGCTAGTCCAAAGCCCATTTGATTCTGATCAGTCGGTGAAGCT TTTGAGCTTGCGCCAAAAAAAACGACACATTCACCCCATTTTTCTTTCGC AGTATTCAGATGGTAGGAGGATCGATGCGGAATGGTTTTCCCAGCCTTAT TCAACCACGGTTCCTATAATGTGATAACGTAATAATTGCAGGAATACCTC GAGAGGAAGTACGGACAACATTCCGGATCGCGGATGGCGACTGCTCTAGA GAGAGCTGGGCAGTCTACAGGCATAAAATTCAACAATGAGCGGAGGGTGC ACAATACCATCCAATCTCACCGGCTGGTTCGCCTCGCCGAAGAACAGGGA AAGAGCGGTGACATGATCGAGCAGCTGTTCCAAGGGTATTTCGAGGAGGG CAGGAACATCGCTGATGTCGACGTGTTACTTGAACTCGCCCAAAAGGTGT ATACCTCGCCATGTCGAGCGACGTGGTGTAAAAACATTGAAGTGGCGACC CAATCATGTGATTGTAGGAACTGATTCTTGTAAGCTTCGGGGTGCGGAAT GTTTCTAGAGGATGAGCGAAATACCTTGCGTACAGTGTCATTATCCCAGC AGCCATCTCAGAAGTACCACCACCATTCGATTTTCGAGTGTCATTATTTC TTCACACACCCTCTCGTTTGCCCCTGCTACCCACAGCCTTACCCCACGTA ACCAACCCCTCAAATGCAACATGACACAGGCTGGAGTTTCGTGCACCAAG GAATTCATTCATGGGTCAGAGGGGAAGCGAGAGGTCCTCCATGAGTACAA GCAGGGCGTGCAGTCTTCAGGAATCACTGGCGTGCCATACTTTGTCTTTT CGCGAGAAGGGAGCAAGGACGTCCTACCCCTCTCGGGCGCGCAGCCTCCC GAGACATTCATTGAGGTTTTTGAAGCTCTATCATAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig18061:2666..7001-

>mRNA_H-elongata_contig18061.4808.1 ID=mRNA_H-elongata_contig18061.4808.1|Name=mRNA_H-elongata_contig18061.4808.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1278bp|location=Sequence derived from alignment at H-elongata_contig18061:2666..7001- (Himanthalia elongata Himel1 dioecious)
CAGGTATTTAGCGACAACGTGTGCCCATGGTGCTTTGTTGGGAAGCGTAA
CCTGGAGAGCGCAATGAAGCAGTTCACAGCTACACAGCCGACTCATGTCC
CGCCAGTTTTCAATATCAGCTGGAAGCCGTTCTTCCTCAACATCGAGTCA
CCCGAGACGTCCGACGTCCCGATCAAGCAGGTATTTAGCGACAACGTGTG
CCCATGGTGCTTTGTTGGGAAGCGTAACCTGGAGAGCGCAATGAAGCAGT
TCACAGCTACACAGCCGACTCATGTCCCGCCAGTTTTCAATATCAGCTGG
AAGCCGTTCTTCCTCAACATCGAGTCACCCGAGACGTCCGACGTCCCGAT
CAAGGAATACCTCGAGAGGAAGTACGGACAACATTCCGGATCGCGGATGG
CGACTGCTCTAGAGAGAGCTGGGCAGTCTACAGGCATAAAATTCAACAAT
GAGCGGAGGGTGCACAATACCATCCAATCTCACCGGCTGGTTCGCCTCGC
CGAAGAACAGGGAAAGAGCGGTGACATGATCGAGCAGCTGTTCCAAGGGT
ATTTCGAGGAGGGCAGGAACATCGCTGATGTCGACGTGTTACTTGAACTC
GCCCAAAAGGAATACCTCGAGAGGAAGTACGGACAACATTCCGGATCGCG
GATGGCGACTGCTCTAGAGAGAGCTGGGCAGTCTACAGGCATAAAATTCA
ACAATGAGCGGAGGGTGCACAATACCATCCAATCTCACCGGCTGGTTCGC
CTCGCCGAAGAACAGGGAAAGAGCGGTGACATGATCGAGCAGCTGTTCCA
AGGGTATTTCGAGGAGGGCAGGAACATCGCTGATGTCGACGTGTTACTTG
AACTCGCCCAAAAGGCTGGAGTTTCGTGCACCAAGGAATTCATTCATGGG
TCAGAGGGGAAGCGAGAGGTCCTCCATGAGTACAAGCAGGGCGTGCAGTC
TTCAGGAATCACTGGCGTGCCATACTTTGTCTTTTCGCGAGAAGGGAGCA
AGGACGTCCTACCCCTCTCGGGCGCGCAGCCTCCCGAGACATTCATTGAG
GTTTTTGAAGCTCTATCATAAGCTGGAGTTTCGTGCACCAAGGAATTCAT
TCATGGGTCAGAGGGGAAGCGAGAGGTCCTCCATGAGTACAAGCAGGGCG
TGCAGTCTTCAGGAATCACTGGCGTGCCATACTTTGTCTTTTCGCGAGAA
GGGAGCAAGGACGTCCTACCCCTCTCGGGCGCGCAGCCTCCCGAGACATT
CATTGAGGTTTTTGAAGCTCTATCATAA
back to top