mRNA_H-elongata_contig18061.4808.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig18061.4808.1 vs. uniprot
Match: B7ZGN0_9PHAE (DSBA oxidoreductase n=1 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGN0_9PHAE) HSP 1 Score: 332 bits (850), Expect = 2.030e-113 Identity = 155/214 (72.43%), Postives = 188/214 (87.85%), Query Frame = 1
Query: 1 QVFSDNVCPWCFVGKRNLESAMKQFTATQPTHV---PPVFNISWKPFFLNIESPETSDVPIKEYLERKYGQHSGSRMATALERAGQSTGIKFNNERRVHNTIQSHRLVRLAEEQGKSGDMIEQLFQGYFEEGRNIADVDVLLELAQKAGVSCTKEFIHGSEGKREVLHEYKQGVQSSGITGVPYFVFSREGSKDVLPLSGAQPPETFIEVFEAL 633
+V SDNVCPWC+VGKRNLESAMKQF +QPT PPVF++ WKPFFLN++SPETS+ PI+EYLE+KYG+ +GSRMA ALERAG+STGI FNN+RRVHNTI+SHRLVRLA++Q K GDMIEQLF GYFEEG+NIAD DVLLE+AQKAGV CTKE++ G EG++EVL+EY++GVQ+ G++GVPY++ SREGSK +PLSGAQPPE F+E FEAL
Sbjct: 7 KVISDNVCPWCYVGKRNLESAMKQFATSQPTEKEQEPPVFDVRWKPFFLNVKSPETSEEPIQEYLEKKYGKGAGSRMAVALERAGKSTGINFNNDRRVHNTIRSHRLVRLADQQEKGGDMIEQLFHGYFEEGKNIADSDVLLEIAQKAGVECTKEYLEGKEGQQEVLNEYQKGVQTQGVSGVPYYIISREGSKATVPLSGAQPPEAFVEAFEAL 220
BLAST of mRNA_H-elongata_contig18061.4808.1 vs. uniprot
Match: A0A6H5KYU3_9PHAE (DSBA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYU3_9PHAE) HSP 1 Score: 319 bits (818), Expect = 1.460e-108 Identity = 147/213 (69.01%), Postives = 182/213 (85.45%), Query Frame = 1
Query: 1 QVFSDNVCPWCFVGKRNLESAMKQFTATQP-THVPPVFNISWKPFFLNIESPETSDVPIKEYLERKYGQHSGSRMATALERAGQSTGIKFNNERRVHNTIQSHRLVRLAEEQGKSGDMIEQLFQGYFEEGRNIADVDVLLELAQKAGVSCTKEFIHGSEGKREVLHEYKQGVQSSGITGVPYFVFSREGSKDVLPLSGAQPPETFIEVFEALS 636
++FSDNVCPWCFVGKRNLE+AMKQF A +P T PPVF++ WKPFFLNIE+PETS++PI EYLE+KYG+ +GSRMA +L AG++TGI+FNN+R+VHNTI+SHRLVR A+ QGK G+MI+QLF YFE+GRNIADVDVLLELA+KAGV CTK+++ G EG+ EV+ EYK G+ + GI+GVPYF+ SREGSK +PLSG QPP F+E FEALS
Sbjct: 7 KIFSDNVCPWCFVGKRNLETAMKQFAAREPSTQSPPVFDVRWKPFFLNIEAPETSELPITEYLEKKYGKGAGSRMAASLAMAGEATGIRFNNDRKVHNTIRSHRLVRFADGQGKGGEMIDQLFHAYFEQGRNIADVDVLLELAEKAGVECTKDYLEGKEGQEEVISEYKHGIHNHGISGVPYFIVSREGSKATVPLSGGQPPAAFVEAFEALS 219
BLAST of mRNA_H-elongata_contig18061.4808.1 vs. uniprot
Match: A0A835YGU7_9STRA (Protein disulfide isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGU7_9STRA) HSP 1 Score: 191 bits (484), Expect = 8.180e-58 Identity = 98/209 (46.89%), Postives = 136/209 (65.07%), Query Frame = 1
Query: 10 SDNVCPWCFVGKRNLESAMKQFTATQPTHVPPVFNISWKPFFLNIESPETSDVPIKEYLERKYGQHSGSRMATALERAGQSTGIKFNNERRVHNTIQSHRLVRLAEEQGKSGDMIEQLFQGYFEEGRNIADVDVLLELAQKAGVSC-TKEFIHGSEGKREVLHEYKQGVQSSGITGVPYFVFSREGSKDVLPLSGAQPPETFIEVFEAL 633
S VCPWCF+GKR LE+A+++ P V +WKPFFL+ SP+ S +PI +L +KYG +G+RMA +L AG+ GIKF +R V NTI SHRLV LA +QGK +IE LF GYFE+G ++ VD L+ +A+ AG+S + ++ E + V+ E + GITGVP+FV +R+G+K+ L LSGAQP + F E F+AL
Sbjct: 17 SPPVCPWCFIGKRRLEAAIRE-RGLGPKDV----QTTWKPFFLDANSPKDSGIPIGVHLRQKYGAQAGARMAASLAAAGEENGIKFKEDRTVQNTIMSHRLVHLAGKQGKQDAVIEALFSGYFEQGAKLSSVDTLVRIAETAGISGDVRAYLESGEDEDVVMREAFDSARRLGITGVPFFVIARDGNKERLTLSGAQPVDVFDEAFDAL 220
BLAST of mRNA_H-elongata_contig18061.4808.1 vs. uniprot
Match: B3SBG0_TRIAD (DSBA domain-containing protein n=2 Tax=Trichoplax TaxID=10227 RepID=B3SBG0_TRIAD) HSP 1 Score: 149 bits (377), Expect = 1.270e-41 Identity = 88/217 (40.55%), Postives = 129/217 (59.45%), Query Frame = 1
Query: 4 VFSDNVCPWCFVGKRNLESAMKQFTATQPTHVPPVFNISWKPFFLNIESPETSDVPIKEYLERKYGQH--SGSRMATA-LERAGQSTGIKFNNERRVHNTIQSHRLVRLAEEQGKSGDMIEQLFQGYFEEGRNIADVDVLLELAQKAGVSC--TKEFIHGSEGKREVLHEYKQGVQSSGITGVPYFVFSREGSKD--VLPLSGAQPPETFIEVFEAL 633
+ SD +CPWCFVGKR+LE+AMK F +T F+I WKPF LN +PE +P+ EYL ++YGQ +R T+ L AG+ G+ F++ R+ N+I+SH L+ A + K + E LFQ YF +G NI DV VLL+ A++ G+ K+ + E +++++ E K Q+ I GVP+FV S G + +PL G QP E F VF ++
Sbjct: 12 ITSDTMCPWCFVGKRHLETAMKDFESTFE------FDIEWKPFLLNSNTPEEG-IPVLEYLAQRYGQQVADDARNGTSSLIAAGRKVGLNFDSNRKFVNSIRSHCLLDYARTEKKQNQLAELLFQRYFIDGNNINDVKVLLDCAKEIGLKAEEAKKSLQDKERRKKIIEEAKVATQNQ-IHGVPHFVISLIGDQHGKAMPLHGCQPIEMFRRVFTSI 220
BLAST of mRNA_H-elongata_contig18061.4808.1 vs. uniprot
Match: A0A433CYQ7_9FUNG (DSBA domain-containing protein n=3 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433CYQ7_9FUNG) HSP 1 Score: 143 bits (361), Expect = 4.730e-39 Identity = 89/224 (39.73%), Postives = 128/224 (57.14%), Query Frame = 1
Query: 4 VFSDNVCPWCFVGKRNLESAMKQFTATQPTHVPPVFNISWKPFFLNIESPETSDVPIKEYLERKYGQHSGSRMATALERAG--------QSTG----IKFNNERRVHNTIQSHRLVRLAEEQGKSGDMIEQLFQGYFEEGRNIADVDVLLELAQKAGV--SCTKEFIHGSEGKREVLHEYKQGVQSSGITGVPYFVFSREGSKDVLPLSGAQPPETFIEVFEAL 633
+ SD +CPWCFVGKR LE+A+ Q P F W P+ L+ P+ S Y+ +K+G+ +M +E G QSTG I FN RV NT SHRLV A +QGK +M+E+LF+ YFE+ R++ADV+ L E+A+K G+ + T F+ EG+ EV E + + S I+GVP+F+ + + LSGAQPPETF+E+F+ +
Sbjct: 24 IVSDTICPWCFVGKRRLETAIAQAIKAHPGTK---FETVWHPYELDPTLPKESVDKHANYV-KKFGEERMKQMLPYMENIGRLLIASSPQSTGKAENISFNFGGRVGNTTDSHRLVWWATKQGKQDEMVEELFRHYFEQERDVADVETLAEIARKVGLDRNATLAFLQSDEGRAEVKAEIYRNMGKS-ISGVPHFMIDKRYT-----LSGAQPPETFVELFDEI 237
BLAST of mRNA_H-elongata_contig18061.4808.1 vs. uniprot
Match: A0A2I0X9A3_9ASPA (DSBA domain-containing protein n=2 Tax=Epidendroideae TaxID=158332 RepID=A0A2I0X9A3_9ASPA) HSP 1 Score: 140 bits (353), Expect = 4.210e-38 Identity = 86/218 (39.45%), Postives = 121/218 (55.50%), Query Frame = 1
Query: 4 VFSDNVCPWCFVGKRNLESAMK----QFTATQPTHVPPVFNISWKPFFLNIESPETSDVPIKEYLERKYGQHSGSRMATALERAGQSTGIKFNNERRVHNTIQSHRLVRLAEEQG--KSGDMIEQLFQGYFEEGRNIADVDVLLELAQKAGVSCTKEFIHG-SEGKREVLHEYKQGVQSSGITGVPYFVFSREGSKDVLPLSGAQPPETFIEVFEALS 636
V SD VCPWCFVGK+NLE AM QF F + W PFFLN +P+ + E+ + K+G + + + + G +++ NT+ SHRL+ A QG K ++E+LFQ YF +G+ I D VLL+ AQK G+ E I+ ++G +EV E ++ SS I+GVPYFVF+ GS LSG QPPE F+ F+A+S
Sbjct: 18 VSSDTVCPWCFVGKKNLEKAMSLAKDQFN----------FEVKWHPFFLNPNAPKEGILK-SEFYKNKFGSTQYEHIISRMREVFRGLGFEYDTAGMTGNTLDSHRLISFAANQGYEKQNALVEELFQNYFIQGKFIGDKQVLLDAAQKVGIEGAAELINDPNKGLKEVNEELEK--YSSRISGVPYFVFN--GS---FQLSGGQPPEAFLHAFQAVS 217
BLAST of mRNA_H-elongata_contig18061.4808.1 vs. uniprot
Match: A0A809RMA1_9PROT (Thiol oxidoreductase n=1 Tax=Candidatus Desulfobacillus denitrificans TaxID=2608985 RepID=A0A809RMA1_9PROT) HSP 1 Score: 136 bits (343), Expect = 1.260e-36 Identity = 81/209 (38.76%), Postives = 120/209 (57.42%), Query Frame = 1
Query: 4 VFSDNVCPWCFVGKRNLESAMKQFTATQPTHVPPVFNISWKPFFLNIESPETSDVPIKEYLERKYG-QHSGSRMATALERAGQSTGIKFNNER--RVHNTIQSHRLVRLAEEQGKSGDMIEQLFQGYFEEGRNIADVDVLLELAQKAGVS--CTKEFIHGSEGKREVLHEYKQGVQSSGITGVPYFVFSREGSKDVLPLSGAQPPETFI 615
V SD VCPWCF+GKR LE+A+++ +P VP I W PFFLN ++PE + P + +LE+K+G +++ + AG+S GI+F ER R NT+++HRL+ A+ QG + ++E+LF F EG+++ D VL LA G T F+ G EG V ++ Q GITGVP+F+ + + GAQPPE +
Sbjct: 8 VVSDVVCPWCFIGKRRLEAALRELKQERPDVVP---RIRWLPFFLNPDTPEAGE-PYRPFLEKKFGGPEKLAQIWAQIAEAGRSAGIEFAFERIERRANTLKAHRLIHRAQTQGSADALVERLFSAQFVEGQDVGDAAVLARLAAACGEEEGQTLAFLRGEEGAAAVRAGFED-AQRMGITGVPFFILAGR-----FGVGGAQPPEPML 206
BLAST of mRNA_H-elongata_contig18061.4808.1 vs. uniprot
Match: A0A839SRW3_9HYPH (Putative DsbA family dithiol-disulfide isomerase n=1 Tax=Limibacillus halophilus TaxID=1579333 RepID=A0A839SRW3_9HYPH) HSP 1 Score: 136 bits (342), Expect = 1.730e-36 Identity = 84/216 (38.89%), Postives = 122/216 (56.48%), Query Frame = 1
Query: 4 VFSDNVCPWCFVGKRNLESAMKQFTATQPTHVPPVFNISWKPFFLNIESPETSDVPIKEYLERKYGQHSG-SRMATALERAGQSTGIKFNNER--RVHNTIQSHRLVRLAEEQGKSGDMIEQLFQGYFEEGRNIADVDVLLELAQKAGVSCTK--EFIHGSEGKREVLHEYKQGVQSSGITGVPYFVFSREGSKDVLPLSGAQPPETFIEVFEALS 636
+FSD +CPWCF+GKR LE A++ H W+ F LN E P ++ + EYLERK+G G S++ + +E G+S + F +R R NT+ SHRLVR A GK +++E+LFQ YF EG NI D L E+A + G+ + EF+ G + K E+L E + GI GVP F+F + +SGAQ PE ++V ++L+
Sbjct: 5 IFSDTICPWCFIGKRRLEKAIESRGEEVEIH--------WRAFQLNPEMP-SAGMDRTEYLERKFGGPEGASQVYSRIEEVGRSEALNFAFDRISRTPNTVDSHRLVRFATNIGKQEELVERLFQAYFTEGANIGDRKQLAEIAVEVGLDRAEVEEFLAGEDLKEEILAE-DLFARQQGIQGVPCFIFDGRYA-----VSGAQDPEVLMKVMDSLN 205
BLAST of mRNA_H-elongata_contig18061.4808.1 vs. uniprot
Match: A0A532EK46_9BACT (DsbA family oxidoreductase n=1 Tax=Nitrospira sp. TaxID=70125 RepID=A0A532EK46_9BACT) HSP 1 Score: 135 bits (341), Expect = 2.580e-36 Identity = 88/214 (41.12%), Postives = 117/214 (54.67%), Query Frame = 1
Query: 1 QVFSDNVCPWCFVGKRNLESAMKQFTATQPTHVPPVFNISWKPFFLNIESPETSDVPIKEYLERKYGQ-HSGSRMATALERAGQSTGIKFNNER--RVHNTIQSHRLVRLAEEQGKSGDMIEQLFQGYFEEGRNIADVDVLLELAQKAGVSCTK--EFIHGSEGKREVLHEYKQGVQSSGITGVPYFVFSREGSKDVLPLSGAQPPETFIEVFE 627
+V+SD VCPWC+VGKR LE A+ Q ISW+PF LN P + YL+ K+G + RM L AG I F E+ R NT +HRLV A +QGK D++E +F+ YF EG+NI DV L +A +AG+ T+ EF+ +G EV E G Q GI GVPYFVF+ + +SGAQPP+ F+ F+
Sbjct: 11 EVYSDIVCPWCYVGKRRLERALAQLNDGAQAR------ISWRPFQLNPTMP-LDGMDRTAYLKAKFGSLEAFGRMEEQLLAAGADERIPFAFEKIERTPNTFAAHRLVWYAAQQGKQDDVVEAVFRAYFLEGKNIGDVKTLTHVAAEAGLDRTETEEFLESEKGVVEVKGEEAVGRQL-GIRGVPYFVFN-----GTVSISGAQPPDMFVSAFQ 211
BLAST of mRNA_H-elongata_contig18061.4808.1 vs. uniprot
Match: A0A5N6QY07_9ROSI (DSBA domain-containing protein n=1 Tax=Carpinus fangiana TaxID=176857 RepID=A0A5N6QY07_9ROSI) HSP 1 Score: 135 bits (341), Expect = 2.650e-36 Identity = 83/214 (38.79%), Postives = 121/214 (56.54%), Query Frame = 1
Query: 4 VFSDNVCPWCFVGKRNLESAMKQFTATQPTHVPPVFNISWKPFFLNIESPETSDVPIKEYLERKYGQHSGSRMATALERAGQSTGIKFNNERRVHNTIQSHRLVRLAEEQG--KSGDMIEQLFQGYFEEGRNIADVDVLLELAQKAGVSCTKEFIHG-SEGKREVLHEYKQGVQSSGITGVPYFVFSREGSKDVLPLSGAQPPETFIEVFEALS 636
V SD VCPWCFVGKRNL+ A+ + Q F + W PF LN +P+ + KEY K+G S R+ + +S G+++N NT+ SHRL+ A +QG K +++E+L GYF +G+ I D + L+E A+K G+ EF+ + G +EV E ++ S+ ITGVPYFV + + LSGAQPPE F+ FE ++
Sbjct: 18 VSSDTVCPWCFVGKRNLDKAIAAASKDQYG-----FEVRWHPFQLNPSAPKEG-INKKEYYRTKFGSES-ERLEARMSEVFKSHGLEYNLSGLTGNTLDSHRLMYFAGQQGLDKQHNLMEELSLGYFTQGKYIGDQEFLVESAKKVGIEGAAEFLQDPNNGLKEVNEELEK--YSAHITGVPYFVIN-----GIQKLSGAQPPEVFLRAFEVVT 217 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18061.4808.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig18061.4808.1 >prot_H-elongata_contig18061.4808.1 ID=prot_H-elongata_contig18061.4808.1|Name=mRNA_H-elongata_contig18061.4808.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=213bp QVFSDNVCPWCFVGKRNLESAMKQFTATQPTHVPPVFNISWKPFFLNIESback to top mRNA from alignment at H-elongata_contig18061:2666..7001- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig18061.4808.1 ID=mRNA_H-elongata_contig18061.4808.1|Name=mRNA_H-elongata_contig18061.4808.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4336bp|location=Sequence derived from alignment at H-elongata_contig18061:2666..7001- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig18061:2666..7001- >mRNA_H-elongata_contig18061.4808.1 ID=mRNA_H-elongata_contig18061.4808.1|Name=mRNA_H-elongata_contig18061.4808.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1278bp|location=Sequence derived from alignment at H-elongata_contig18061:2666..7001- (Himanthalia elongata Himel1 dioecious)back to top |