prot_H-elongata_contig180478.4805.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig180478.4805.1
Unique Nameprot_H-elongata_contig180478.4805.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length133
Homology
BLAST of mRNA_H-elongata_contig180478.4805.1 vs. uniprot
Match: A0A6H5L663_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L663_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 5.440e-29
Identity = 51/132 (38.64%), Postives = 88/132 (66.67%), Query Frame = 0
Query:    1 MVNGKFSLMVGVHFDDIIVSGENDVCDEFLSELKKRFPVKHQGKLKMYTGCAFERDWENGILEINQKTFAENMITQYGITAVSNIPASPGMDLGPRVEGETGGNDEFGDYRALVGSLMWMSVMTRPDIANAL 132
            MV+G   ++V ++ DDI+V+G ++ C+E L+ L K+FP K+ G+ + + GCA ERD+E G L I+   + ++M+ ++ + + S IPASPG+DLGP+ +   GG       +  +GS+MW+S  +RPD++ A+
Sbjct:   57 MVDGVVVMIVVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECEWFDGCAIERDFEAGTLRISHAAYIDSMVKRFDVQSASRIPASPGVDLGPKRDDMKGGE---WPVKEAIGSMMWVSTFSRPDVSLAV 185          
BLAST of mRNA_H-elongata_contig180478.4805.1 vs. uniprot
Match: A0A6H5JBN2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBN2_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 1.110e-27
Identity = 51/132 (38.64%), Postives = 89/132 (67.42%), Query Frame = 0
Query:    1 MVNGKFSLMVGVHFDDIIVSGENDVCDEFLSELKKRFPVKHQGKLKMYTGCAFERDWENGILEINQKTFAENMITQYGITAVSNIPASPGMDLGPRVEGETGGNDEFGDYRALVGSLMWMSVMTRPDIANAL 132
            MV+    +++ ++ DDI+V+G ++ C+E L+ L K+FP ++ G+ + + GCA ERD E G L+I+Q  + ++M+ ++ + + S IPASPG+DLGP+ + E GG       R  +GS+MW+S  +RPD++ A+
Sbjct:  651 MVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTRNVGECEWFDGCAIERDVEAGNLKISQTAYIDSMVKRFDVQSTSRIPASPGVDLGPKRDNENGGE---WPVREAIGSMMWVSTFSRPDVSFAV 779          
BLAST of mRNA_H-elongata_contig180478.4805.1 vs. uniprot
Match: A0A6H5JJY0_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJY0_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 2.840e-27
Identity = 53/132 (40.15%), Postives = 86/132 (65.15%), Query Frame = 0
Query:    1 MVNGKFSLMVGVHFDDIIVSGENDVCDEFLSELKKRFPVKHQGKLKMYTGCAFERDWENGILEINQKTFAENMITQYGITAVSNIPASPGMDLGPRVEGETGGNDEFGDYRALVGSLMWMSVMTRPDIANAL 132
            MV+    +++ ++ DDI+V+G ++ C+E L+ L K+FP K+ G+ + + GCA ERD E G L I+Q  + ++M+ ++ + + S IPA+PG DLGP  E E GG       R  +GS+MWMS  +RPD++ A+
Sbjct:  807 MVDEVVVMIIVIYADDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMLKRFDVQSTSRIPATPGADLGPIREDEEGGE---WPVREAIGSMMWMSTFSRPDVSFAV 935          
BLAST of mRNA_H-elongata_contig180478.4805.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 3.760e-27
Identity = 51/132 (38.64%), Postives = 87/132 (65.91%), Query Frame = 0
Query:    1 MVNGKFSLMVGVHFDDIIVSGENDVCDEFLSELKKRFPVKHQGKLKMYTGCAFERDWENGILEINQKTFAENMITQYGITAVSNIPASPGMDLGPRVEGETGGNDEFGDYRALVGSLMWMSVMTRPDIANAL 132
            MV+    +++ ++ DDI+V+G ++ C+E L+ L K+FP K+  + + + GCA ERD E G L I+Q  + ++M+ ++ + + S IPASPG+DLGP+ + E GG       R  +GS+MW+S  +RPD++ A+
Sbjct:  475 MVDEVVVMIIVIYVDDILVAGSDEDCEELLASLSKKFPTKNLEECQWFDGCAIERDVETGTLRISQTAYIDSMVKRFDVQSTSRIPASPGVDLGPKRDDEKGGE---WPVREAIGSIMWVSTFSRPDVSFAV 603          
BLAST of mRNA_H-elongata_contig180478.4805.1 vs. uniprot
Match: A0A6H5KYI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYI5_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 3.890e-27
Identity = 51/132 (38.64%), Postives = 87/132 (65.91%), Query Frame = 0
Query:    1 MVNGKFSLMVGVHFDDIIVSGENDVCDEFLSELKKRFPVKHQGKLKMYTGCAFERDWENGILEINQKTFAENMITQYGITAVSNIPASPGMDLGPRVEGETGGNDEFGDYRALVGSLMWMSVMTRPDIANAL 132
            MV+    +++ ++ DD++V+G ++ C+E L+ L K+FP K+ G+ + + GCA ERD E G L I+Q  + ++M+ ++   + S IPASPG+DLGP+ + E GG       R  +GS+MW+S  +RPD++ A+
Sbjct:  878 MVDEVVVMIIAIYVDDLLVAGSDEDCEELLASLNKKFPPKYLGECQWFDGCAIERDVEAGTLRISQTAYIDSMLIRFDEQSTSRIPASPGVDLGPKRDDEKGGE---WSVREAIGSMMWVSTFSRPDVSFAV 1006          
BLAST of mRNA_H-elongata_contig180478.4805.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 5.180e-27
Identity = 51/132 (38.64%), Postives = 87/132 (65.91%), Query Frame = 0
Query:    1 MVNGKFSLMVGVHFDDIIVSGENDVCDEFLSELKKRFPVKHQGKLKMYTGCAFERDWENGILEINQKTFAENMITQYGITAVSNIPASPGMDLGPRVEGETGGNDEFGDYRALVGSLMWMSVMTRPDIANAL 132
            MV+    +++ ++ DDI+V+G ++ C+E L+ L K+FP K+ G+ + + GCA ERD + G L I+Q  + ++M+ ++ + + S IPA+PG DLGP+ E + GG       R  VGS+MW+S  +RPD++ A+
Sbjct:  512 MVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDDKGGE---WPVREAVGSMMWVSTFSRPDVSFAV 640          
BLAST of mRNA_H-elongata_contig180478.4805.1 vs. uniprot
Match: A0A6H5K616_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K616_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 1.460e-26
Identity = 49/125 (39.20%), Postives = 83/125 (66.40%), Query Frame = 0
Query:    8 LMVGVHFDDIIVSGENDVCDEFLSELKKRFPVKHQGKLKMYTGCAFERDWENGILEINQKTFAENMITQYGITAVSNIPASPGMDLGPRVEGETGGNDEFGDYRALVGSLMWMSVMTRPDIANAL 132
            +++ ++ DDI+V+G ++ C+E L+ L K+FP K+ G+ + + GCA ER  E G L I+Q  + ++M+ ++   + S IPASPG+DLGP+ + E GG       R  +GS+MW+S  +RPD++ A+
Sbjct:  109 MIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECEWFDGCAIERGVEAGTLRISQTAYIDSMVKRFEAQSTSLIPASPGVDLGPKRDDENGGE---WPVREAIGSMMWVSTFSRPDVSFAV 230          
BLAST of mRNA_H-elongata_contig180478.4805.1 vs. uniprot
Match: A0A6H5K1V1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1V1_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 1.800e-26
Identity = 51/132 (38.64%), Postives = 85/132 (64.39%), Query Frame = 0
Query:    1 MVNGKFSLMVGVHFDDIIVSGENDVCDEFLSELKKRFPVKHQGKLKMYTGCAFERDWENGILEINQKTFAENMITQYGITAVSNIPASPGMDLGPRVEGETGGNDEFGDYRALVGSLMWMSVMTRPDIANAL 132
            MV+    +++ +H DDI+V+G ++ C+E L+   KRFP K+ G+ + + GCA ERD + G L+I+Q  + ++M+ ++ +   S IPASPG+DLGP+ + E  G       R  +GS+MW+S  +RPD+  A+
Sbjct:  491 MVDEVVVMIIVIHVDDILVAGSDEDCEELLASFNKRFPSKNLGECEWFDGCAIERDVDAGALKISQTAYIDSMVKRFDVQWTSRIPASPGVDLGPKRDDEKAGE---WPVRETIGSMMWVSTFSRPDVLFAV 619          
BLAST of mRNA_H-elongata_contig180478.4805.1 vs. uniprot
Match: A0A6H5K123_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K123_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 6.930e-26
Identity = 49/131 (37.40%), Postives = 83/131 (63.36%), Query Frame = 0
Query:    1 MVNGKFSLMVGVHFDDIIVSGENDVCDEFLSELKKRFPVKHQGKLKMYTGCAFERDWENGILEINQKTFAENMITQYGITAVSNIPASPGMDLGPRVEGETGGNDEFGDYRALVGSLMWMSVMTRPDIANA 131
            MV+    +++ ++ D I+V G ++ C E L+ L K+FP K+ G+ + +  CA +RD E G L I++  + ++M+ ++ + + S IPASPG+DLGPR + E GG       R  +GS+MW+S  +RPD++ A
Sbjct:    1 MVDEVVVMIIVIYVDIILVDGSDEDCKELLASLNKKFPTKNLGECEWFDRCAIDRDVEAGTLNISETAYIDSMVKRFDVQSTSRIPASPGIDLGPRRDDEKGGE---WPVREAIGSMMWVSAFSRPDVSFA 128          
BLAST of mRNA_H-elongata_contig180478.4805.1 vs. uniprot
Match: A0A6H5JVN4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN4_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 1.590e-25
Identity = 53/134 (39.55%), Postives = 85/134 (63.43%), Query Frame = 0
Query:    2 VNGKF---SLMVGVHFDDIIVSGENDVCDEFLSELKKRFPVKHQGKLKMYTGCAFERDWENGILEINQKTFAENMITQYGITAVSNIPASPGMDLGPRVEGETGGNDEFGDYRALVGSLMWMSVMTRPDIANAL 132
            VNG     S  + ++ DDI+V+G ++ C+E L+ L K+FP K+ G+ + + GCA ERD E G L I+Q  + ++M+ ++ + +   IPA+PG DLGP+ E E GG       R  +GS+MW+S  +RPD++ A+
Sbjct:  626 VNGLMGVPSRXIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDMHSTPLIPATPGADLGPKREDEEGGE---WPVREAIGSMMWVSTFSRPDVSFAV 756          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig180478.4805.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L663_9PHAE5.440e-2938.64Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JBN2_9PHAE1.110e-2738.64Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JJY0_9PHAE2.840e-2740.15CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A6H5JC10_9PHAE3.760e-2738.64Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KYI5_9PHAE3.890e-2738.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQN6_9PHAE5.180e-2738.64Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K616_9PHAE1.460e-2639.20Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1V1_9PHAE1.800e-2638.64Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K123_9PHAE6.930e-2637.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVN4_9PHAE1.590e-2539.55Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 4..83
e-value: 9.7E-9
score: 35.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig180478contigH-elongata_contig180478:14..412 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig180478.4805.1mRNA_H-elongata_contig180478.4805.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig180478 2..979 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig180478.4805.1 ID=prot_H-elongata_contig180478.4805.1|Name=mRNA_H-elongata_contig180478.4805.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=133bp
MVNGKFSLMVGVHFDDIIVSGENDVCDEFLSELKKRFPVKHQGKLKMYTG
CAFERDWENGILEINQKTFAENMITQYGITAVSNIPASPGMDLGPRVEGE
TGGNDEFGDYRALVGSLMWMSVMTRPDIANAL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2