mRNA_H-elongata_contig180478.4805.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig180478.4805.1
Unique NamemRNA_H-elongata_contig180478.4805.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig180478.4805.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE)

HSP 1 Score: 286 bits (732), Expect = 2.980e-89
Identity = 145/326 (44.48%), Postives = 210/326 (64.42%), Query Frame = 1
Query:    1 IFRKMVNGKFSLMVGVHFDDIIVSGENDVCDEFLSELKKRFPVKHQGKLKMYTGCAFERDWENGILEINQKTFAENMITQYGITAVSNIPASPGMDLGPRVEGETGGNDEFGDYRALVGSLMWMSVMTRPDIANAL*VCVCHSHNPTARHW*ALLRIAAYVNATKEIGLRFVRGSGLSLPVFADADYAAASNDRRSVSGLAVLLGDTAISWKSSTQKCVTTATCEAEYVALCDAAKEAIFERAFLVFLQPQLAGVCVGIFGDNEGAIAIANNPSSASRNKHFDVKFHFIQGLVRSGDIRILNVGTKDQHVDILTKALWRKKFMVHR 978
            +FRKM +           D I+V+G +D C E L+ L K FP K  G+   + GCA ERD E G L I+Q  + ++++ ++ + + S+IPASPG+D+GP+ + E+GG       R  +GS+MW+S  +RPDI+ A+     H+H P  RHW A+++I AY+  T+++G+ + RGSGL L V+ DA YA A  DRRSVSGLA  +G T IS  S TQ  V+ ++ EAEY+A  +  KEA+F RA L F+ P+ +G  + +  DN+GA+A+  NP S++R+KH DV++HFI+GL RSGDI I  V T +QH D+LTKAL +     HR
Sbjct:  180 VFRKMKDDVVXXXXXXXXDXILVAGSDDDCKELLASLNKAFPTKDLGECVWFDGCAVERDLEAGTLRISQTAYIDSIVNRFDVQSTSSIPASPGVDIGPKRDDESGGE---WPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYADAE-DRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHR 501          
BLAST of mRNA_H-elongata_contig180478.4805.1 vs. uniprot
Match: A0A6H5K274_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K274_9PHAE)

HSP 1 Score: 289 bits (740), Expect = 2.310e-88
Identity = 142/326 (43.56%), Postives = 212/326 (65.03%), Query Frame = 1
Query:    1 IFRKMVNGKFSLMVGVHFDDIIVSGENDVCDEFLSELKKRFPVKHQGKLKMYTGCAFERDWENGILEINQKTFAENMITQYGITAVSNIPASPGMDLGPRVEGETGGNDEFGDYRALVGSLMWMSVMTRPDIANAL*VCVCHSHNPTARHW*ALLRIAAYVNATKEIGLRFVRGSGLSLPVFADADYAAASNDRRSVSGLAVLLGDTAISWKSSTQKCVTTATCEAEYVALCDAAKEAIFERAFLVFLQPQLAGVCVGIFGDNEGAIAIANNPSSASRNKHFDVKFHFIQGLVRSGDIRILNVGTKDQHVDILTKALWRKKFMVHR 978
            +FRKMV+    +++ ++ DDI+V+G ++ C+E L+ L K+FP K+ G+ + + GCA ERD E G L I+Q  + ++M+ ++ + + S IPA+PG DLGP+ E E GG       R  +GS+MW+S  +RPD++ A+     H+H P  RHW A+ +I  Y+  T+++G+ + RGSGL L V+ DA YA  + DRRSVSGLA  +G T +S  S TQ  V+ ++ EAEY+A  +  KEA+F RA L+F+ P+  G  + +  DN+GA+A+  NP S+ R  H DV+FHFI+GL  SGDI +  V T +QH D+LTKAL +     HR
Sbjct:  428 VFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVARFDVQSTSRIPATPGADLGPKREDEEGGE---WPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSMEAEYIAAGEGVKEALFVRAVLLFVAPETRGSSIQVLEDNQGAMALVQNPLSSGRTTHIDVRFHFIRGLFGSGDISVKFVPTTEQHADLLTKALRKASLQYHR 749          
BLAST of mRNA_H-elongata_contig180478.4805.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 294 bits (753), Expect = 2.680e-87
Identity = 145/326 (44.48%), Postives = 214/326 (65.64%), Query Frame = 1
Query:    1 IFRKMVNGKFSLMVGVHFDDIIVSGENDVCDEFLSELKKRFPVKHQGKLKMYTGCAFERDWENGILEINQKTFAENMITQYGITAVSNIPASPGMDLGPRVEGETGGNDEFGDYRALVGSLMWMSVMTRPDIANAL*VCVCHSHNPTARHW*ALLRIAAYVNATKEIGLRFVRGSGLSLPVFADADYAAASNDRRSVSGLAVLLGDTAISWKSSTQKCVTTATCEAEYVALCDAAKEAIFERAFLVFLQPQLAGVCVGIFGDNEGAIAIANNPSSASRNKHFDVKFHFIQGLVRSGDIRILNVGTKDQHVDILTKALWRKKFMVHR 978
            +FRKMV+    +++ ++ DDI+V+G ++ C+E L+ L K+FP K+ G+ + + GCA ERD E G L I+Q  + ++M+ ++ + + S IPA+PG DLGP+ E E GG       R  +GS+MW+S  +RPD++ A+     H+H P  RHW A+ +I  Y+  T+++G+ + RGSGL L V+ DA YA  + DRRSVSGLA  +G T +S  S TQ  V+ ++ EAEY+A  +  KEA+F RA L F+ P+ +G  + +  DN+GAIA+  NP S+ R KH DV++HFI+GL RSGDI +  V T +QH D+LTKAL R     HR
Sbjct:  917 VFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGE---WPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHR 1238          
BLAST of mRNA_H-elongata_contig180478.4805.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 294 bits (753), Expect = 1.120e-86
Identity = 145/326 (44.48%), Postives = 214/326 (65.64%), Query Frame = 1
Query:    1 IFRKMVNGKFSLMVGVHFDDIIVSGENDVCDEFLSELKKRFPVKHQGKLKMYTGCAFERDWENGILEINQKTFAENMITQYGITAVSNIPASPGMDLGPRVEGETGGNDEFGDYRALVGSLMWMSVMTRPDIANAL*VCVCHSHNPTARHW*ALLRIAAYVNATKEIGLRFVRGSGLSLPVFADADYAAASNDRRSVSGLAVLLGDTAISWKSSTQKCVTTATCEAEYVALCDAAKEAIFERAFLVFLQPQLAGVCVGIFGDNEGAIAIANNPSSASRNKHFDVKFHFIQGLVRSGDIRILNVGTKDQHVDILTKALWRKKFMVHR 978
            +FRKMV+    +++ ++ DDI+V+G ++ C+E L+ L K+FP K+ G+ + + GCA ERD E G L I+Q  + ++M+ ++ + + S IPA+PG DLGP+ E E GG       R  +GS+MW+S  +RPD++ A+     H+H P  RHW A+ +I  Y+  T+++G+ + RGSGL L V+ DA YA  + DRRSVSGLA  +G T +S  S TQ  V+ ++ EAEY+A  +  KEA+F RA L F+ P+ +G  + +  DN+GAIA+  NP S+ R KH DV++HFI+GL RSGDI +  V T +QH D+LTKAL R     HR
Sbjct: 1296 VFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGE---WPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHR 1617          
BLAST of mRNA_H-elongata_contig180478.4805.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 294 bits (753), Expect = 1.220e-86
Identity = 145/326 (44.48%), Postives = 214/326 (65.64%), Query Frame = 1
Query:    1 IFRKMVNGKFSLMVGVHFDDIIVSGENDVCDEFLSELKKRFPVKHQGKLKMYTGCAFERDWENGILEINQKTFAENMITQYGITAVSNIPASPGMDLGPRVEGETGGNDEFGDYRALVGSLMWMSVMTRPDIANAL*VCVCHSHNPTARHW*ALLRIAAYVNATKEIGLRFVRGSGLSLPVFADADYAAASNDRRSVSGLAVLLGDTAISWKSSTQKCVTTATCEAEYVALCDAAKEAIFERAFLVFLQPQLAGVCVGIFGDNEGAIAIANNPSSASRNKHFDVKFHFIQGLVRSGDIRILNVGTKDQHVDILTKALWRKKFMVHR 978
            +FRKMV+    +++ ++ DDI+V+G ++ C+E L+ L K+FP K+ G+ + + GCA ERD E G L I+Q  + ++M+ ++ + + S IPA+PG DLGP+ E E GG       R  +GS+MW+S  +RPD++ A+     H+H P  RHW A+ +I  Y+  T+++G+ + RGSGL L V+ DA YA  + DRRSVSGLA  +G T +S  S TQ  V+ ++ EAEY+A  +  KEA+F RA L F+ P+ +G  + +  DN+GAIA+  NP S+ R KH DV++HFI+GL RSGDI +  V T +QH D+LTKAL R     HR
Sbjct: 1459 VFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGE---WPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHR 1780          
BLAST of mRNA_H-elongata_contig180478.4805.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 290 bits (743), Expect = 2.610e-85
Identity = 143/319 (44.83%), Postives = 212/319 (66.46%), Query Frame = 1
Query:    1 IFRKMVNGKFSLMVGVHFDDIIVSGENDVCDEFLSELKKRFPVKHQGKLKMYTGCAFERDWENGILEINQKTFAENMITQYGITAVSNIPASPGMDLGPRVEGETGGNDEFGDYRALVGSLMWMSVMTRPDIANAL*VCVCHSHNPTARHW*ALLRIAAYVNATKEIGLRFVRGSGLSLPVFADADYAAASNDRRSVSGLAVLLGDTAISWKSSTQKCVTTATCEAEYVALCDAAKEAIFERAFLVFLQPQLAGVCVGIFGDNEGAIAIANNPSSASRNKHFDVKFHFIQGLVRSGDIRILNVGTKDQHVDILTKALWR 957
            +FRKMV+    +++ ++ DDI+V+G ++ C+E L+ L K+FP K+ G+ + + GCA ERD E G L I+Q  + ++M+ ++ + + S IPA+PG DLGP+ E E GG       R  +GS+MW+S  +RPD++ A+     H+H P  RHW A+ +I  Y+  T+++G+ + RGSGL L V+ DA YA  + DRRSVSGLA  +G T +S  S TQ  V+ ++ EAEY+A  +  KEA+F RA L F+ P+ +G  + +  DN+GAIA+  NP S+ R KH DV++HFI+GL RSGDI +  V T +QH D+LTKAL R
Sbjct: 1316 VFRKMVDQVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGE---WPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSR 1630          
BLAST of mRNA_H-elongata_contig180478.4805.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE)

HSP 1 Score: 280 bits (715), Expect = 4.790e-84
Identity = 140/326 (42.94%), Postives = 209/326 (64.11%), Query Frame = 1
Query:    1 IFRKMVNGKFSLMVGVHFDDIIVSGENDVCDEFLSELKKRFPVKHQGKLKMYTGCAFERDWENGILEINQKTFAENMITQYGITAVSNIPASPGMDLGPRVEGETGGNDEFGDYRALVGSLMWMSVMTRPDIANAL*VCVCHSHNPTARHW*ALLRIAAYVNATKEIGLRFVRGSGLSLPVFADADYAAASNDRRSVSGLAVLLGDTAISWKSSTQKCVTTATCEAEYVALCDAAKEAIFERAFLVFLQPQLAGVCVGIFGDNEGAIAIANNPSSASRNKHFDVKFHFIQGLVRSGDIRILNVGTKDQHVDILTKALWRKKFMVHR 978
            +FRKMV+    +++ ++ DDI+V+G ++ C+E L+ L K+FP K+ G+ + + GCA ERD + G L I+Q  + ++M+ ++ + + S IPA+PG DLGP+ E + GG       R  VGS+MW+S  +RPD++ A+     H+H P  RHW A+ +I  Y+  T+++G+ + RGSGL L V+ DA YA  + DRRSVS LA  +G T +S  S  +  V+ ++ EAEY+A  +  KEA+F RA L F+ P+  G  + +  DN+GAIA+  NP S+   KH DV+FHFI+GL RSGD  +  V T +QH DILT+AL R     HR
Sbjct:  508 VFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDDKGGE---WPVREAVGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDARYAD-TEDRRSVSRLATTVGGTVVSHGSKARSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETRGSSIQVLEDNQGAIALVQNPLSSGGMKHIDVRFHFIRGLFRSGDTSVKFVPTTEQHADILTQALSRASLQYHR 829          
BLAST of mRNA_H-elongata_contig180478.4805.1 vs. uniprot
Match: A0A6H5L060_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L060_9PHAE)

HSP 1 Score: 283 bits (725), Expect = 2.560e-83
Identity = 141/326 (43.25%), Postives = 211/326 (64.72%), Query Frame = 1
Query:    1 IFRKMVNGKFSLMVGVHFDDIIVSGENDVCDEFLSELKKRFPVKHQGKLKMYTGCAFERDWENGILEINQKTFAENMITQYGITAVSNIPASPGMDLGPRVEGETGGNDEFGDYRALVGSLMWMSVMTRPDIANAL*VCVCHSHNPTARHW*ALLRIAAYVNATKEIGLRFVRGSGLSLPVFADADYAAASNDRRSVSGLAVLLGDTAISWKSSTQKCVTTATCEAEYVALCDAAKEAIFERAFLVFLQPQLAGVCVGIFGDNEGAIAIANNPSSASRNKHFDVKFHFIQGLVRSGDIRILNVGTKDQHVDILTKALWRKKFMVHR 978
            +FRKMV+    +++ ++ DDI+V+G ++ C+E L+ L K+FP K+ G+ + + GCA ERD + G L I+Q  +  +M+ ++ + + S IPA+PG+DL P+ E E GG       R  +GS+MW+S  + PD++ A+     H+H P  RHW A+ +   Y+  T+++G+ + RGSGL L ++ DA YA  + DRRSVSGLA  +G T +S  S TQ  V+ ++ EAEY+A  +  KEA+F RA L F+ P+ +G  + +  DN+GAIA+  NP S+ R KH DV FHFI+GL RSGDI +  V T +QH D+LTKAL R   + HR
Sbjct:  946 VFRKMVDEVAVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVKGGTLRISQTAYIGSMVKRFDVQSTSRIPATPGVDLVPKREDEEGGE---WPRREAIGSMMWVSTFSLPDVSFAVRAVARHAHAPAKRHWDAIQKTLGYLKETRDLGIAYQRGSGLGLAMYVDASYAD-TEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIQVLEDNQGAIALVQNPLSSGRTKHIDVTFHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRASLLYHR 1267          
BLAST of mRNA_H-elongata_contig180478.4805.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE)

HSP 1 Score: 281 bits (719), Expect = 4.430e-82
Identity = 143/326 (43.87%), Postives = 209/326 (64.11%), Query Frame = 1
Query:    1 IFRKMVNGKFSLMVGVHFDDIIVSGENDVCDEFLSELKKRFPVKHQGKLKMYTGCAFERDWENGILEINQKTFAENMITQYGITAVSNIPASPGMDLGPRVEGETGGNDEFGDYRALVGSLMWMSVMTRPDIANAL*VCVCHSHNPTARHW*ALLRIAAYVNATKEIGLRFVRGSGLSLPVFADADYAAASNDRRSVSGLAVLLGDTAISWKSSTQKCVTTATCEAEYVALCDAAKEAIFERAFLVFLQPQLAGVCVGIFGDNEGAIAIANNPSSASRNKHFDVKFHFIQGLVRSGDIRILNVGTKDQHVDILTKALWRKKFMVHR 978
            +FRK+V+GK   ++ ++ DDI+  G  +  +E L+ L+K  PVK  G+   Y GCA ERD E G   ++QK +   ++ ++GIT  ++ PA P  DLGP+ + E G +      R  +G LMW +  TRPDIA AL     ++H PT R W AL++I +Y+NAT ++G+ +VRGSGL L V+ DA YA     RRSV+G+AV +G T +S  S TQ+ V+ +T EAEY+A  +  KEA+F RA L F+ P+ +G  + +  DN+GAI++  NP S++R+KH DV+FHFI+ L +SG I +  + T +QH D+LTKAL R K   HR
Sbjct: 1469 VFRKIVDGKVVSIIVIYVDDIMYVGSEEEGEELLTSLRKTLPVKDLGECTWYDGCAIERDLELGTTTLSQKAYIAGLMDRFGITTTASTPADPNADLGPKRDDEPGVDKPV---RQAIGCLMWPATFTRPDIATALNAVQRNAHAPTMRDWKALVQILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIAAGEGVKEALFVRAVLSFIAPETSGAKIKVLEDNQGAISLVQNPFSSARSKHIDVRFHFIRELFKSGRISVEYIPTDEQHADLLTKALGRTKLEDHR 1791          
BLAST of mRNA_H-elongata_contig180478.4805.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE)

HSP 1 Score: 280 bits (715), Expect = 5.240e-82
Identity = 142/326 (43.56%), Postives = 209/326 (64.11%), Query Frame = 1
Query:    1 IFRKMVNGKFSLMVGVHFDDIIVSGENDVCDEFLSELKKRFPVKHQGKLKMYTGCAFERDWENGILEINQKTFAENMITQYGITAVSNIPASPGMDLGPRVEGETGGNDEFGDYRALVGSLMWMSVMTRPDIANAL*VCVCHSHNPTARHW*ALLRIAAYVNATKEIGLRFVRGSGLSLPVFADADYAAASNDRRSVSGLAVLLGDTAISWKSSTQKCVTTATCEAEYVALCDAAKEAIFERAFLVFLQPQLAGVCVGIFGDNEGAIAIANNPSSASRNKHFDVKFHFIQGLVRSGDIRILNVGTKDQHVDILTKALWRKKFMVHR 978
            +FRK+V+GK   ++ ++ DDI+  G  +  +E L+ L+K  PVK  G+   Y GCA ERD E G   ++QK +   ++ ++GIT  ++ PA P  +LGP+ + E G +      R  +G LMW +  TRPDIA AL     ++H PT R W AL++I +Y+NAT ++G+ +VRGSGL L V+ DA YA     RRSV+G+AV +G T +S  S TQ+ V+ +T EAEY+A  +  KEA+F RA L F+ P+ +G  + +  DN+GAI++  NP S++R+KH DV+FHFI+ L +SG I +  + T +QH D+LTKAL R K   HR
Sbjct:  916 VFRKIVDGKVVSIIVIYVDDIMYVGSEEEGEELLTSLRKTLPVKDLGECTWYDGCAIERDLELGTTTLSQKAYIAGLMDRFGITTTASTPADPNAELGPKRDDEPGVDKPV---RQAIGCLMWPATFTRPDIATALNAVQRNAHAPTMRDWKALVQILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIAAGEGVKEALFVRAVLSFIAPETSGAKIKVLEDNQGAISLVQNPFSSARSKHIDVRFHFIRELFKSGRISVEYIPTDEQHADLLTKALGRTKLEDHR 1238          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig180478.4805.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCG0_9PHAE2.980e-8944.48Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K274_9PHAE2.310e-8843.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSG8_9PHAE2.680e-8744.48Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE1.120e-8644.48Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE1.220e-8644.48Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JN00_9PHAE2.610e-8544.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQN6_9PHAE4.790e-8442.94Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L060_9PHAE2.560e-8343.25Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L175_9PHAE4.430e-8243.87Uncharacterized protein n=9 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JKS3_9PHAE5.240e-8243.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig180478contigH-elongata_contig180478:2..979 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.7
Seed ortholog evalue1.2e-09
Seed eggNOG ortholog164328.Phyra87462
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QHJF@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size978
Cds size399
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig180478.4805.1prot_H-elongata_contig180478.4805.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig180478 14..412 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930041.150857-UTR-H-elongata_contig180478:1..131622930041.150857-UTR-H-elongata_contig180478:1..13Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig180478 2..13 +
1691679257.9416842-UTR-H-elongata_contig180478:1..131691679257.9416842-UTR-H-elongata_contig180478:1..13Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig180478 2..13 +
1622930041.1899707-UTR-H-elongata_contig180478:412..9791622930041.1899707-UTR-H-elongata_contig180478:412..979Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig180478 413..979 +
1691679257.9653876-UTR-H-elongata_contig180478:412..9791691679257.9653876-UTR-H-elongata_contig180478:412..979Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig180478 413..979 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930041.1656098-CDS-H-elongata_contig180478:13..4121622930041.1656098-CDS-H-elongata_contig180478:13..412Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig180478 14..412 +
1691679257.9545195-CDS-H-elongata_contig180478:13..4121691679257.9545195-CDS-H-elongata_contig180478:13..412Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig180478 14..412 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig180478.4805.1

>prot_H-elongata_contig180478.4805.1 ID=prot_H-elongata_contig180478.4805.1|Name=mRNA_H-elongata_contig180478.4805.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=133bp
MVNGKFSLMVGVHFDDIIVSGENDVCDEFLSELKKRFPVKHQGKLKMYTG
CAFERDWENGILEINQKTFAENMITQYGITAVSNIPASPGMDLGPRVEGE
TGGNDEFGDYRALVGSLMWMSVMTRPDIANAL*
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mRNA from alignment at H-elongata_contig180478:2..979+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig180478.4805.1 ID=mRNA_H-elongata_contig180478.4805.1|Name=mRNA_H-elongata_contig180478.4805.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=978bp|location=Sequence derived from alignment at H-elongata_contig180478:2..979+ (Himanthalia elongata Himel1 dioecious)
ATTTTTCGTAAGATGGTCAATGGCAAGTTTTCACTGATGGTTGGAGTACA TTTCGATGATATAATTGTATCGGGAGAGAACGATGTCTGCGATGAGTTCT TGAGTGAGTTGAAAAAGAGATTTCCTGTGAAACACCAAGGGAAGTTAAAG ATGTACACCGGCTGCGCATTCGAACGTGATTGGGAGAACGGAATCCTAGA AATAAACCAAAAGACGTTTGCGGAAAACATGATTACACAGTACGGAATCA CCGCTGTTTCCAATATTCCAGCGAGTCCTGGAATGGATCTCGGTCCTAGA GTTGAAGGGGAAACTGGTGGCAATGATGAGTTTGGTGATTACCGTGCCCT TGTAGGGAGTCTGATGTGGATGTCGGTAATGACGAGACCGGACATTGCGA ATGCTCTCTGAGTTTGTGTGTGTCATAGCCATAACCCTACCGCGCGACAT TGGTAGGCACTTCTACGAATAGCCGCGTACGTGAATGCAACGAAAGAGAT TGGTTTAAGGTTCGTGCGTGGTTCTGGCCTCAGTCTTCCTGTGTTTGCAG ATGCTGATTACGCGGCGGCATCAAATGATAGGCGGTCTGTGTCTGGTTTA GCAGTACTTTTGGGTGACACGGCAATAAGCTGGAAAAGTAGTACGCAGAA ATGTGTGACGACTGCAACTTGTGAGGCTGAGTACGTTGCCCTTTGTGATG CAGCAAAAGAGGCGATATTTGAGAGAGCGTTTTTGGTTTTTCTGCAGCCG CAGCTGGCCGGGGTGTGTGTTGGCATTTTTGGTGATAATGAGGGTGCGAT AGCGATCGCAAACAACCCAAGCAGTGCGTCGAGAAACAAACATTTTGATG TAAAGTTCCACTTTATTCAGGGACTCGTGCGTTCAGGAGATATTCGGATC CTTAATGTAGGAACGAAGGACCAACACGTGGACATTCTAACTAAGGCATT GTGGCGTAAGAAGTTTATGGTGCATCGC
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Coding sequence (CDS) from alignment at H-elongata_contig180478:2..979+

>mRNA_H-elongata_contig180478.4805.1 ID=mRNA_H-elongata_contig180478.4805.1|Name=mRNA_H-elongata_contig180478.4805.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=798bp|location=Sequence derived from alignment at H-elongata_contig180478:2..979+ (Himanthalia elongata Himel1 dioecious)
ATGGTCAATGGCAAGTTTTCACTGATGGTTGGAGTACATTTCGATGATAT
AATTGTATCGGGAGAGAACGATGTCTGCGATGAGTTCTTGAGTGAGTTGA
AAAAGAGATTTCCTGTGAAACACCAAGGGAAGTTAAAGATGTACACCGGC
TGCGCATTCGAACGTGATTGGGAGAACGGAATCCTAGAAATAAACCAAAA
GACGTTTGCGGAAAACATGATTACACAGTACGGAATCACCGCTGTTTCCA
ATATTCCAGCGAGTCCTGGAATGGATCTCGGTCCTAGAGTTGAAGGGGAA
ACTGGTGGCAATGATGAGTTTGGTGATTACCGTGCCCTTGTAGGGAGTCT
GATGTGGATGTCGGTAATGACGAGACCGGACATTGCGAATGCTCTCTGAA
TGGTCAATGGCAAGTTTTCACTGATGGTTGGAGTACATTTCGATGATATA
ATTGTATCGGGAGAGAACGATGTCTGCGATGAGTTCTTGAGTGAGTTGAA
AAAGAGATTTCCTGTGAAACACCAAGGGAAGTTAAAGATGTACACCGGCT
GCGCATTCGAACGTGATTGGGAGAACGGAATCCTAGAAATAAACCAAAAG
ACGTTTGCGGAAAACATGATTACACAGTACGGAATCACCGCTGTTTCCAA
TATTCCAGCGAGTCCTGGAATGGATCTCGGTCCTAGAGTTGAAGGGGAAA
CTGGTGGCAATGATGAGTTTGGTGATTACCGTGCCCTTGTAGGGAGTCTG
ATGTGGATGTCGGTAATGACGAGACCGGACATTGCGAATGCTCTCTGA
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