mRNA_H-elongata_contig10576.475.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10576.475.1
Unique NamemRNA_H-elongata_contig10576.475.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig10576.475.1 vs. uniprot
Match: A0A6H5JPR8_9PHAE (acidPPc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPR8_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 9.630e-28
Identity = 51/88 (57.95%), Postives = 69/88 (78.41%), Query Frame = 3 
Query:    6 LPMSAILIGISGIRDYMHHPDDVLAGLALGAASAYWSFRFLVVMPFRHEIGSPQWRTTPKWVKEEEREWAQEEVEVMRLCPLKSRKHR 269
            LPMSAIL+G+S IR+Y H PDDVL G  +G A+A+W+F+F V++PFRHEIGSP+W+  PKW+ EEE+ W +EE E +RLC  + R+ R
Sbjct:  227 LPMSAILVGVSRIREYWHRPDDVLVGFIMGFAAAHWAFQFAVLLPFRHEIGSPEWKMNPKWLDEEEQRW-EEEDEELRLCGWRRRRAR 313
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BLAST of mRNA_H-elongata_contig10576.475.1 vs. uniprot
Match: D7FPN4_ECTSI (acidPPc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPN4_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 8.740e-27
Identity = 51/88 (57.95%), Postives = 68/88 (77.27%), Query Frame = 3 
Query:    6 LPMSAILIGISGIRDYMHHPDDVLAGLALGAASAYWSFRFLVVMPFRHEIGSPQWRTTPKWVKEEEREWAQEEVEVMRLCPLKSRKHR 269
            LPMSAILIG++ IR+Y H PDDVL G  +G A+A+W+F F V++PFRHEIGSP+W+  PKW+ EEE+ W +EE E +RLC  + R+ R
Sbjct:  323 LPMSAILIGVTRIREYWHRPDDVLVGFIMGFAAAHWAFHFAVLLPFRHEIGSPEWKMNPKWLDEEEQRW-EEEDEELRLCGWRRRRAR 409
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10576.475.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JPR8_9PHAE9.630e-2857.95acidPPc domain-containing protein n=1 Tax=Ectocarp... [more]
D7FPN4_ECTSI8.740e-2757.95acidPPc domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10576contigH-elongata_contig10576:5938..7146 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size511
Cds size420
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10576.475.1prot_H-elongata_contig10576.475.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10576 5949..7066 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929590.7617438-UTR-H-elongata_contig10576:5937..59481622929590.7617438-UTR-H-elongata_contig10576:5937..5948Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10576 5938..5948 +
1691679082.1911368-UTR-H-elongata_contig10576:5937..59481691679082.1911368-UTR-H-elongata_contig10576:5937..5948Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10576 5938..5948 +
1622929590.832187-UTR-H-elongata_contig10576:7066..71461622929590.832187-UTR-H-elongata_contig10576:7066..7146Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10576 7067..7146 +
1691679082.2381444-UTR-H-elongata_contig10576:7066..71461691679082.2381444-UTR-H-elongata_contig10576:7066..7146Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10576 7067..7146 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929590.7787333-CDS-H-elongata_contig10576:5948..59771622929590.7787333-CDS-H-elongata_contig10576:5948..5977Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10576 5949..5977 +
1691679082.1995528-CDS-H-elongata_contig10576:5948..59771691679082.1995528-CDS-H-elongata_contig10576:5948..5977Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10576 5949..5977 +
1622929590.7925558-CDS-H-elongata_contig10576:6208..65241622929590.7925558-CDS-H-elongata_contig10576:6208..6524Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10576 6209..6524 +
1691679082.209328-CDS-H-elongata_contig10576:6208..65241691679082.209328-CDS-H-elongata_contig10576:6208..6524Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10576 6209..6524 +
1622929590.813758-CDS-H-elongata_contig10576:6991..70661622929590.813758-CDS-H-elongata_contig10576:6991..7066Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10576 6992..7066 +
1691679082.2280529-CDS-H-elongata_contig10576:6991..70661691679082.2280529-CDS-H-elongata_contig10576:6991..7066Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10576 6992..7066 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10576.475.1

>prot_H-elongata_contig10576.475.1 ID=prot_H-elongata_contig10576.475.1|Name=mRNA_H-elongata_contig10576.475.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=140bp
MSAILIGISGIRDYMHHPDDVLAGLALGAASAYWSFRFLVVMPFRHEIGS
PQWRTTPKWVKEEEREWAQEEVEVMRLCPLKSRKHRGRIRYESADEERVV
EPTVPVLALAAASTEVPIPRRALEADVDAAIEKYDMSPV*
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mRNA from alignment at H-elongata_contig10576:5938..7146+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10576.475.1 ID=mRNA_H-elongata_contig10576.475.1|Name=mRNA_H-elongata_contig10576.475.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1209bp|location=Sequence derived from alignment at H-elongata_contig10576:5938..7146+ (Himanthalia elongata Himel1 dioecious)
CTGGGCTGCCAATGTCAGCTATTCTCATCGGGATTTCGGGGTGAGTCGCG
CCTATGACCGATGACCGCCTGCCTCATTGCCGCTCTTTCCGCGTCTGTTA
ATGATTAGGCCACCATTGGGTTTCCACGGACAGACTGCGCATTCGTTTGT
TCGCCCGCGGTCTTTGTTTTTTCCGTGAAATTCATGTAGACTGCCTATGT
TGGGCGAAATTACAGTCTTCCTCCATTCTGCCTCTCCCTCCCTCCCTTCC
CCCCAAAACAAAACCTGGCAGAATCCGAGATTACATGCACCATCCCGACG
ACGTCTTAGCTGGGCTAGCGCTAGGCGCGGCCAGCGCCTACTGGTCCTTC
CGTTTCCTGGTGGTCATGCCGTTCCGTCACGAGATCGGCTCGCCGCAGTG
GAGGACAACCCCTAAGTGGGTGAAAGAGGAGGAGCGGGAATGGGCGCAAG
AGGAAGTAGAGGTGATGCGCCTGTGCCCTCTCAAGAGCAGGAAGCATCGC
GGCCGGATACGCTACGAGTCGGCGGACGAGGAAAGAGTGGTGGAGCCGAC
GGTCCCCGTCCTCGCCCTCGCCGCCGCGTCGACGGAGGTGGGTTCCCCCG
GCGTGCGTCAGTGTCATGTACGCAGGGTCGTCGGTTGGTGTAAACGTCGT
CGTTTGTGCGTTTACATATTACCTGTATCTCTGCACAGTCTTGGCGGCGT
TTCTCTCCGCAGCGCCTACGGTGCTGGCCGGTATTGGAATAGTGGACGTA
CTGGCCGGTAAGTCTCTCGTTGGTATTCGTCACCTGTCTCTATCGCGTAG
CATCCCAGCCCCCACCCTCCACCCCCCATTCCCATACTCAATTTTCTCCC
TCTCGCGCCGGTCAGCTGGTTGTTGCGTGCATTGAAGTGCCGTGGACCTC
GCGCCCTGGACGAAACGACCGCATTAGGAATGGGTTTGAAGTCACGTTTC
AATGTTGTTACTGGTGGGAGAATAAATTGGCCATTGCGTGCGCATGCTTG
TTCTGTCCTGCGTTGATTTGTTTTCGCTTTCTCTCTTCCTCCTCTGTGGA
TCAGGTTCCGATTCCAAGGCGAGCTCTCGAGGCGGATGTTGACGCTGCCA
TAGAAAAATACGATATGTCCCCCGTGTAGGAGTAGCCCCAAGTGCCGGAC
GATGGATGAGAAGGATGGAGAAGAGATGCACGAGGACGAGGGTGAAGACG
AAGAGGAGG
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Coding sequence (CDS) from alignment at H-elongata_contig10576:5938..7146+

>mRNA_H-elongata_contig10576.475.1 ID=mRNA_H-elongata_contig10576.475.1|Name=mRNA_H-elongata_contig10576.475.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=840bp|location=Sequence derived from alignment at H-elongata_contig10576:5938..7146+ (Himanthalia elongata Himel1 dioecious)
ATGTCAGCTATTCTCATCGGGATTTCGGGATGTCAGCTATTCTCATCGGG
ATTTCGGGAATCCGAGATTACATGCACCATCCCGACGACGTCTTAGCTGG
GCTAGCGCTAGGCGCGGCCAGCGCCTACTGGTCCTTCCGTTTCCTGGTGG
TCATGCCGTTCCGTCACGAGATCGGCTCGCCGCAGTGGAGGACAACCCCT
AAGTGGGTGAAAGAGGAGGAGCGGGAATGGGCGCAAGAGGAAGTAGAGGT
GATGCGCCTGTGCCCTCTCAAGAGCAGGAAGCATCGCGGCCGGATACGCT
ACGAGTCGGCGGACGAGGAAAGAGTGGTGGAGCCGACGGTCCCCGTCCTC
GCCCTCGCCGCCGCGTCGACGGAGAATCCGAGATTACATGCACCATCCCG
ACGACGTCTTAGCTGGGCTAGCGCTAGGCGCGGCCAGCGCCTACTGGTCC
TTCCGTTTCCTGGTGGTCATGCCGTTCCGTCACGAGATCGGCTCGCCGCA
GTGGAGGACAACCCCTAAGTGGGTGAAAGAGGAGGAGCGGGAATGGGCGC
AAGAGGAAGTAGAGGTGATGCGCCTGTGCCCTCTCAAGAGCAGGAAGCAT
CGCGGCCGGATACGCTACGAGTCGGCGGACGAGGAAAGAGTGGTGGAGCC
GACGGTCCCCGTCCTCGCCCTCGCCGCCGCGTCGACGGAGGTTCCGATTC
CAAGGCGAGCTCTCGAGGCGGATGTTGACGCTGCCATAGAAAAATACGAT
ATGTCCCCCGTGTAGGTTCCGATTCCAAGGCGAGCTCTCGAGGCGGATGT
TGACGCTGCCATAGAAAAATACGATATGTCCCCCGTGTAG
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