mRNA_H-elongata_contig179161.4743.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig179161.4743.1
Unique NamemRNA_H-elongata_contig179161.4743.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig179161.4743.1 vs. uniprot
Match: D7FHM1_ECTSI (TiTiN family member (Ttn-1) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHM1_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 2.180e-13
Identity = 37/62 (59.68%), Postives = 46/62 (74.19%), Query Frame = 2 
Query:    2 GARMSAKLSQYEACDSEISLEETEEDVAITTSKSFVLKSGDELVVSVGRERFHAAEILFTVG 187
            GA+ S  LS YEACDS   ++ET++D  +T +K+F LKSG EL V +GRERFHA EILFT G
Sbjct: 1527 GAQASPMLSGYEACDSRDFIDETDKDEEVTKTKTFTLKSGSELDVKIGRERFHAPEILFTPG 1588
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BLAST of mRNA_H-elongata_contig179161.4743.1 vs. uniprot
Match: A0A6H5JDL2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDL2_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 3.600e-12
Identity = 35/60 (58.33%), Postives = 44/60 (73.33%), Query Frame = 2 
Query:    2 GARMSAKLSQYEACDSEISLEETEEDVAITTSKSFVLKSGDELVVSVGRERFHAAEILFT 181
            GA+ S  LS YEACDS   +++T+ D  +T +K+F LKSG EL V +GRERFHA EILFT
Sbjct:  902 GAQASPMLSGYEACDSRDFIDDTDTDEEVTKTKTFTLKSGSELDVKIGRERFHAPEILFT 961
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig179161.4743.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHM1_ECTSI2.180e-1359.68TiTiN family member (Ttn-1) n=1 Tax=Ectocarpus sil... [more]
A0A6H5JDL2_9PHAE3.600e-1258.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig179161contigH-elongata_contig179161:486..994 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.7
Seed ortholog evalue5.7e-10
Seed eggNOG ortholog2880.D7FHM1
KEGG koko:K10798,ko:K11767
KEGG Pathwayko03410,ko04210,ko04212,ko04214,ko04217,map03410,map04210,map04212,map04214,map04217
KEGG ModuleM00296
EggNOG free text desc.cytoskeleton organization
EggNOG OGsCOG5277@1,KOG0676@2759
EC2.4.2.30
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03021,ko03032,ko03036,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size205
Cds size195
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig179161.4743.1prot_H-elongata_contig179161.4743.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig179161 486..984 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930034.3544514-CDS-H-elongata_contig179161:485..6361622930034.3544514-CDS-H-elongata_contig179161:485..636Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig179161 486..636 -
1691679255.2733054-CDS-H-elongata_contig179161:485..6361691679255.2733054-CDS-H-elongata_contig179161:485..636Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig179161 486..636 -
1622930034.3667514-CDS-H-elongata_contig179161:940..9841622930034.3667514-CDS-H-elongata_contig179161:940..984Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig179161 941..984 -
1691679255.2825232-CDS-H-elongata_contig179161:940..9841691679255.2825232-CDS-H-elongata_contig179161:940..984Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig179161 941..984 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930034.3795435-UTR-H-elongata_contig179161:984..9941622930034.3795435-UTR-H-elongata_contig179161:984..994Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig179161 985..994 -
1691679255.2980046-UTR-H-elongata_contig179161:984..9941691679255.2980046-UTR-H-elongata_contig179161:984..994Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig179161 985..994 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig179161.4743.1

>prot_H-elongata_contig179161.4743.1 ID=prot_H-elongata_contig179161.4743.1|Name=mRNA_H-elongata_contig179161.4743.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=65bp
MSAKLSQYEACDSEISLEETEEDVAITTSKSFVLKSGDELVVSVGRERFH
AAEILFTVGDAIEQ*
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mRNA from alignment at H-elongata_contig179161:486..994-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig179161.4743.1 ID=mRNA_H-elongata_contig179161.4743.1|Name=mRNA_H-elongata_contig179161.4743.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=509bp|location=Sequence derived from alignment at H-elongata_contig179161:486..994- (Himanthalia elongata Himel1 dioecious)
GGGGGCTAGGATGTCGGCAAAGCTGTCCCAGTACGAAGCCTGCGACTCGG
AAATGTGAGCACTTTTTGGAAGAGTTACAGCATGTACAACCGCTAGTATC
TACAAAGCCCGCTAGCTGCGACATAGCTTATGTTCGAAATTCCCACTATT
TGCCGACTTGTGCCCTAACTGTGCAGTAGATTGGTCGTGTAGAGCTGTGT
GTGTAGCTACACGTACATTATGTTACTCTGAGATATTATGGTGCTTCTGT
AGTAAATAAGTATTTTTAACTTTTTATAAAAGTATTTCCTTCCCTTTGTC
GCCTTCTCAAACTACGATCGACGATGACGTCCTGCGTTTCGACGCTTCCT
CGAGCCAGCTCCCTCGAGGAGACCGAAGAGGACGTGGCGATTACCACCTC
CAAGAGCTTCGTACTTAAGTCTGGAGACGAGCTGGTTGTGTCGGTTGGAA
GGGAGCGGTTCCACGCAGCGGAGATATTGTTCACGGTAGGTGATGCTATC
GAGCAATAA
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Coding sequence (CDS) from alignment at H-elongata_contig179161:486..994-

>mRNA_H-elongata_contig179161.4743.1 ID=mRNA_H-elongata_contig179161.4743.1|Name=mRNA_H-elongata_contig179161.4743.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=390bp|location=Sequence derived from alignment at H-elongata_contig179161:486..994- (Himanthalia elongata Himel1 dioecious)
ATGTCGGCAAAGCTGTCCCAGTACGAAGCCTGCGACTCGGAAATATGTCG
GCAAAGCTGTCCCAGTACGAAGCCTGCGACTCGGAAATCTCCCTCGAGGA
GACCGAAGAGGACGTGGCGATTACCACCTCCAAGAGCTTCGTACTTAAGT
CTGGAGACGAGCTGGTTGTGTCGGTTGGAAGGGAGCGGTTCCACGCAGCG
GAGATATTGTTCACGGTAGGTGATGCTATCGAGCAATAACTCCCTCGAGG
AGACCGAAGAGGACGTGGCGATTACCACCTCCAAGAGCTTCGTACTTAAG
TCTGGAGACGAGCTGGTTGTGTCGGTTGGAAGGGAGCGGTTCCACGCAGC
GGAGATATTGTTCACGGTAGGTGATGCTATCGAGCAATAA
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