mRNA_H-elongata_contig17903.4735.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17903.4735.1
Unique NamemRNA_H-elongata_contig17903.4735.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig17903.4735.1 vs. uniprot
Match: D7FP22_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP22_ECTSI)

HSP 1 Score: 412 bits (1060), Expect = 2.940e-142
Identity = 188/240 (78.33%), Postives = 219/240 (91.25%), Query Frame = 1
Query:    1 QTFNMTGGDKIWLCVRELKEDLEALRRANKEDNKRDDDNDGIPDVQQISPEKLLTRKTALALRVINPDRATNALTGIWQGYMSVLVILKFRFAKVITLAVSIGNNMRPTVAKILGPSLAFVVPKEYHQWIAPMINYLCKFVAMTIAWWIQRFVSTVQSAIEGGLLFSRSLLRFISDTTSLKLDPDDTFIDEIVGWTLAACGAYFQISHNWDLPWFVDLLLWPAYVLEAFLEWSVTWMNAP 720
            + FNMTGG+K+ LCV +LK+D++AL  A+KED+KRDDD+DGIPDV+QISPEKLLTRKTALALRVINPDRATNA+TGIWQGYM VLV+LKFRFAKV+ LAVSIGNN+RP VAKI GP+LAFV+P+EYHQWIAPMINY CKFVAMT+AWWIQR +STVQSAI+GGLLFSRSL+ F+S+ T LKLDPD +F+DE++GWTLAACGAYFQ S NWDLPW VDL LWPAY+LE FL+WSVTWM+ P
Sbjct:  148 EAFNMTGGEKVMLCVHDLKQDIKALHYASKEDDKRDDDHDGIPDVKQISPEKLLTRKTALALRVINPDRATNAITGIWQGYMGVLVVLKFRFAKVVALAVSIGNNLRPIVAKIFGPALAFVIPREYHQWIAPMINYFCKFVAMTVAWWIQRLISTVQSAIKGGLLFSRSLMYFVSEVTPLKLDPDHSFLDEVLGWTLAACGAYFQTSINWDLPWAVDLFLWPAYLLETFLKWSVTWMDVP 387          
BLAST of mRNA_H-elongata_contig17903.4735.1 vs. uniprot
Match: A0A835Z0S9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0S9_9STRA)

HSP 1 Score: 270 bits (689), Expect = 1.340e-86
Identity = 123/242 (50.83%), Postives = 179/242 (73.97%), Query Frame = 1
Query:    1 QTFNMTGGDKIWLCVRELKEDLEALRRANKEDNKRDDDNDGIPDVQQISPEKLLTRKTALALRVINPDRATNALTGIWQGYMSVLVILKFRFAKVITLAVSIGNNMRPTVAKILGPSLAFVVPKEYHQWIAPMINYLCKFVAMTIAWWIQRFVSTVQSAIEGGLLFSRSLLRFISDTTSLKLDPDDTFIDEIVGWTLAACGAYFQISHNWDLPWFVDLLLWPAYVLEAFLEWSVTWMNAPPT 726
            + F   GG  ++  + +LK D + ++ ANK+D++ DD+ +GI DV++I   +L++RK  L LR ++PDR  +A+ G+++G+  VLV+L+FRFA+VI LAVSI ++MRP  ++IL P LAF++PKEYH+WI+ MIN LC+ VA TIAW IQR +ST+QSAI+GGL+F+R+L+RF+ +   +  D + T++DEI+GW LAA G Y QI  NW+LP  VDL LWP +V E  L WSVTWM+A P+
Sbjct:  103 EAFRELGGSDVYTALEDLKIDFDIVQTANKKDDEVDDNKNGIKDVKEIPSHQLVSRKLLLVLRSVDPDRVNHAMAGLYKGFTGVLVVLRFRFARVIALAVSIADHMRPLASRILAPPLAFLIPKEYHKWISTMINVLCRTVATTIAWKIQRVLSTIQSAIKGGLMFARALVRFLHENRIISFDDESTYLDEILGWALAAGGIYVQIHMNWNLPLLVDLFLWPLHVSERVLIWSVTWMDASPS 344          
BLAST of mRNA_H-elongata_contig17903.4735.1 vs. uniprot
Match: A0A7S1REG4_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1REG4_ALECA)

HSP 1 Score: 216 bits (549), Expect = 9.570e-66
Identity = 97/239 (40.59%), Postives = 152/239 (63.60%), Query Frame = 1
Query:    1 QTFNMTGGDKIWLCVRELKEDLEALRRANKEDNKRDDDNDGIPDVQQISPEKLLTRKTALALRVINPDRATNALTGIWQGYMSVLVILKFRFAKVITLAVSIGNNMRPTVAKILGPSLAFVVPKEYHQWIAPMINYLCKFVAMTIAWWIQRFVSTVQSAIEGGLLFSRSLLRFISDTTSLKLDPDDTFIDEIVGWTLAACGAYFQISHNWDLPWFVDLLLWPAYVLEAFLEWSVTWMNA 717
            + F   GG ++++C+++L E   A+  A+  D + D D DG+ DV+Q+   +L+ RK AL ++ I+P+    A  G+W  YM VL +LKF+FA+ I LA SI  N+RP +AK+LGP+L  V P +Y +WI+P ++ LCK VA  +AW +++  +TVQS   GGL+ SR+LL  + +   + +  D+T +DE+VGW + ACG Y Q+     +P  +  L WP  VLE  L+W+V W++A
Sbjct:   79 EAFRSMGGSQVYVCLQDLGEQGRAVWVAHVADEEEDADADGVADVRQLEGGRLVARKAALVMKTIDPETVARAAGGLWTAYMGVLTVLKFQFARTIALAESIAQNLRPAMAKVLGPTLVAVTPPDYRKWISPAVSLLCKLVAGAVAWKVKQLAATVQSGFCGGLIASRALLELMRERRLVSVADDETLLDEVVGWCVGACGIYVQLFRGGPVPAILSPLFWPLDVLERVLQWNVAWVDA 317          
BLAST of mRNA_H-elongata_contig17903.4735.1 vs. uniprot
Match: A0A8J2ETN3_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A120 TaxID=2202890 RepID=A0A8J2ETN3_9DINO)

HSP 1 Score: 213 bits (541), Expect = 4.840e-64
Identity = 104/239 (43.51%), Postives = 156/239 (65.27%), Query Frame = 1
Query:    1 QTFNMTGGDKIWLCVRELKEDLEALRRANKEDNKRDDDNDGIPDVQQISPEKLLTRKTALALRVINPDRATNALTGIWQGYMSVLVILKFRFAKVITLAVSIGNNMRPTVAKILGPSLAFVVPKEYHQWIAPMINYLCKFVAMTIAWWIQRFVSTVQSAIEGGLLFSRSLLRFISDTTSLK-LDPDDTFIDEIVGWTLAACGAYFQISHNWDLPWFVDLLLWPAYVLEAFLEWSVTWMN 714
            + F M+GGDKI  C +++ E+   LR  N+ED+  D DNDGI DV QIS  +L+ RK  L +  I+PD+ + A+ G++QG++SVL+ +KF+FA+ + LAVS+    R   A +L P LA  +P +   WI   I+YL K VA+  AW +Q+ V  VQSAI GG +F+++LL F+S    ++ +D D+T +DE +GW +AACG YFQ+ H + L +   L+L+P  ++E  LEW VTW+ 
Sbjct:  130 EAFKMSGGDKISACWKDICEEYAVLRDRNQEDDVEDLDNDGIADVLQISQRELMQRKIKLVVSSIDPDKVSGAVGGLYQGFLSVLMTVKFQFAQSVALAVSMAEKARKPCAVVLTPLLATALPPDSEDWIVAFIDYLTKTVALLFAWTLQKMVCAVQSAIAGGHIFAQNLLYFLSKKLGVENIDLDETMVDEYIGWAIAACGIYFQLIHGFSLSFPFSLILFPLNIVEFALEWVVTWLG 368          
BLAST of mRNA_H-elongata_contig17903.4735.1 vs. uniprot
Match: A0A8J1Z0D1_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A25 TaxID=1410381 RepID=A0A8J1Z0D1_9DINO)

HSP 1 Score: 209 bits (531), Expect = 1.800e-62
Identity = 102/239 (42.68%), Postives = 155/239 (64.85%), Query Frame = 1
Query:    1 QTFNMTGGDKIWLCVRELKEDLEALRRANKEDNKRDDDNDGIPDVQQISPEKLLTRKTALALRVINPDRATNALTGIWQGYMSVLVILKFRFAKVITLAVSIGNNMRPTVAKILGPSLAFVVPKEYHQWIAPMINYLCKFVAMTIAWWIQRFVSTVQSAIEGGLLFSRSLLRFISDTTSLK-LDPDDTFIDEIVGWTLAACGAYFQISHNWDLPWFVDLLLWPAYVLEAFLEWSVTWMN 714
            + F M+GGD I  C  ++ E+   L   N+EDN+ D DNDGI DV QIS  +L+ RK  L +  I+PD+ T A+ G++QG++SVL+ +KF+FA+ I LAVS+    R   A +L P LA  +P     WI   I+YL K +A+  AW +Q+ V  VQSAI+GG +F+++LL F+++   ++ +D D+T +DE +GW +AA G YFQI H + L +   ++L+P  ++E  LEW+VTW+ 
Sbjct:  136 EAFKMSGGDTIEACWNDICEECSLLVEKNEEDNEEDLDNDGIADVLQISQRELMQRKVKLVVTSIDPDKLTKAVGGLYQGFLSVLMTVKFQFAQAIALAVSMAEQARKPAAVVLTPILASALPPNSEDWIVTAIDYLTKTIALLFAWTLQKMVCAVQSAIKGGHMFAQNLLLFLANKLGVENIDLDETMVDEYIGWAIAAMGVYFQIVHGFALVFPFSIVLFPLNIIEFSLEWTVTWLG 374          
BLAST of mRNA_H-elongata_contig17903.4735.1 vs. uniprot
Match: A0A813D688_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813D688_POLGL)

HSP 1 Score: 204 bits (518), Expect = 1.290e-60
Identity = 99/240 (41.25%), Postives = 152/240 (63.33%), Query Frame = 1
Query:    1 QTFNMTGGDKIWLCVRELKEDLEALRRANKEDNKRDDDNDGIPDVQQISPEKLLTRKTALALRVINPDRATNALTGIWQGYMSVLVILKFRFAKVITLAVSIGNNMRPTVAKILGPSLAFVVPKEYHQWIAPMINYLCKFVAMTIAWWIQRFVSTVQSAIEGGLLFSRSLLRFISDTTSL-KLDPDDTFIDEIVGWTLAACGAYFQISHNWDLPWFVDLLLWPAYVLEAFLEWSVTWMNA 717
            + F   GGD++ +C+++L+ DL ++ +A +++           D   +S EK  ++  AL +R ++P R + AL+G+W GYM V++ LK+ FA+ +  A SIG+N+RP  AK+L P+   V P EY QW+ P IN  CK VAM +AW +Q+ VS+VQS+I GGLL SR  L ++  +  L   + +DT IDEI+GW LA+ G YFQI     +P  +  +LWP  V E++L+WSVTW+ +
Sbjct:  137 EAFKTAGGDQMLVCLQDLQADLVSVLQAQEDE-----------DEASLSGEKKASKTLALVMRTVDPGRLSMALSGVWAGYMGVVLALKYNFARTLAFAHSIGDNLRPVAAKLLAPTALSVTPPEYRQWVGPAINLGCKCVAMAVAWKLQQVVSSVQSSISGGLLASRCFLPYLMSSGLLASRNLEDTMIDEILGWGLASAGMYFQIIKGGSVPLLLAPILWPMGVAESWLQWSVTWLGS 365          
BLAST of mRNA_H-elongata_contig17903.4735.1 vs. uniprot
Match: A0A7S2RLK5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RLK5_9STRA)

HSP 1 Score: 193 bits (490), Expect = 3.240e-56
Identity = 88/235 (37.45%), Postives = 149/235 (63.40%), Query Frame = 1
Query:    1 QTFNMTGGDKIWLCVRELKEDLEALRRANKEDNKRDDDNDGIPDVQQISPEKLLTRKTALALRVINPDRATNALTGIWQGYMSVLVILKFRFAKVITLAVSIGNNMRPTVAKILGPSLAFVVPKEYHQWIAPMINYLCKFVAMTIAWWIQRFVSTVQSAIEGGLLFSRSLLRFISDTTSLKLDPDDTFIDEIVGWTLAACGAYFQISHNWDLPWFVDLLLWPAYVLEAFLEWSVT 705
            + +   GG + +   R+L  + + +   + ED+ +D+D DGI DV QIS ++L  RK  +AL   +PD+   A+ GI+ G++ V+ +LK +FAK I L  +IG+ +     ++  P L  ++P++YH+WI  ++ Y+CK +A++IAW++QR +S   SAI GGLL SR +L F++    +  +  ++++DEIVGW+LAA G YFQ    + +P+  +LLLWP  V E ++ W+V+
Sbjct:  150 EAWQQAGGRRAYENARDLYIEFKRVMHKSAEDDLKDEDGDGIADVDQISGKELFMRKAHIALTTCDPDKLNGAIQGIYTGWVGVIAVLKIQFAKTIALGSAIGDFLYSPALRVATPVLVHLIPEDYHRWIPSLVLYVCKSIALSIAWYVQRVISAFHSAIRGGLLCSRGVLNFMNSRGIIDFNDTESYLDEIVGWSLAAAGFYFQFMMGFSMPFPFNLLLWPFGVAEWYIVWTVS 384          
BLAST of mRNA_H-elongata_contig17903.4735.1 vs. uniprot
Match: A0A7S2VT12_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2VT12_9DINO)

HSP 1 Score: 184 bits (467), Expect = 3.890e-53
Identity = 92/227 (40.53%), Postives = 137/227 (60.35%), Query Frame = 1
Query:    1 QTFNMTGGDKIWLCVRELKEDLEALRRANKEDNKRDDDNDGIPDVQQISPEKLLTRKTALALRVINPDRATNALTGIWQGYMSVLVILKFRFAKVITLAVSIGNNMRPTVAKILGPSLAFVVPKEYHQWIAPMINYLCKFVAMTIAWWIQRFVSTVQSAIEGGLLFSRSLLRFISDTTSLKLDPDDTFIDEIVGWTLAACGAYFQISHNWDLPWFVDLLLWPAYVLE 681
            + F + GGD + + +  L++    +++A++ED+K D D DG+ DV+Q+   +L +RK AL LR I+P   + A+ G+W GY+ VL  LK R+A+   LA SIG+ +RP  +K+ GPS+  V P +Y  W+ P  N  CK + +TIAW +Q  +STVQS + GGL  SR+ L  +   +      DDT  DE+ GW LAA G Y+Q      LP  +  +LWPA +LE
Sbjct:  132 EAFKLAGGDSMMMHLVTLRDSAVKVQQASQEDDKHDADGDGVADVRQMGARQLFSRKMALVLRSIDPGVVSEAVGGLWSGYLGVLAALKLRYARTAALAHSIGDAVRPAASKLFGPSVLAVTPPDYRNWVGPAFNLACKVLGLTIAWRLQHAISTVQSGLTGGLQASRAALALMGRAS------DDTMADEVAGWALAATGIYYQFLGG-GLPAVLVPVLWPAGLLE 351          
BLAST of mRNA_H-elongata_contig17903.4735.1 vs. uniprot
Match: A0A7S2D5F5_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D5F5_9STRA)

HSP 1 Score: 177 bits (448), Expect = 5.330e-52
Identity = 79/204 (38.73%), Postives = 130/204 (63.73%), Query Frame = 1
Query:   94 DNKRDDDNDGIPDVQQISPEKLLTRKTALALRVINPDRATNALTGIWQGYMSVLVILKFRFAKVITLAVSIGNNMRPTVAKILGPSLAFVVPKEYHQWIAPMINYLCKFVAMTIAWWIQRFVSTVQSAIEGGLLFSRSLLRFISDTTSLKLDPDDTFIDEIVGWTLAACGAYFQISHNWDLPWFVDLLLWPAYVLEAFLEWSVT 705
            D+++DDD DGI DV Q+S + LLTRK+ L LR ++P++ + AL G+   + +V  +LK  FA+ I+L VSI + ++    +++ P L  V+P EYH+WI   I+YLCK+V +++AW +Q  +S   S+  GGL+F+R++L F  +     +  +DT IDE  GW LAA G + Q+   ++L +  + +LWP    E +++W +T
Sbjct:    1 DDQKDDDGDGIKDVNQVSGQALLTRKSLLVLRTVDPEKISKALAGVAVSWTAVAAVLKVEFARTISLGVSIADRLKAPTGRVMIPVLTHVLPPEYHRWIPVTIDYLCKYVGVSVAWKLQSAISAFHSSFRGGLMFTRAVLTFAGEKGLTNVRHEDTMIDEFTGWPLAAAGFWCQLKGGFELHFPFNFVLWPLEAAEKWIQWQIT 204          
BLAST of mRNA_H-elongata_contig17903.4735.1 vs. uniprot
Match: A0A7S1AZY3_NOCSC (Hypothetical protein (Fragment) n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1AZY3_NOCSC)

HSP 1 Score: 179 bits (455), Expect = 3.170e-51
Identity = 91/217 (41.94%), Postives = 131/217 (60.37%), Query Frame = 1
Query:    1 QTFNMTGGDKIWLCVRELKEDLEALRRANKEDNKRDDDNDGIPDVQQISPEKLLTRKTALALRVINPDRATNALTGIWQGYMSVLVILKFRFAKVITLAVSIGNNMRPTVAKILGPSLAFVVPKEYHQWIAPMINYLCKFVAMTIAWWIQRFVSTVQSAIEGGLLFSRSLLRFISDTTSLKLDPDDTFIDEIVGWTLAACGAYFQISHNWDLPWFVD 651
            + F  TG  +    +  L ++L  +   +K+D+  D D DGI DV QI+  +L+TRKT L +R  + D+   AL  ++ G++SV   LK +FA+ I+L VSIGN  RP    +L P L  +VPKEYH WI P+I+Y+CK VA+++AWWIQR +S   SAI G L+ +R+LLR  ++        D T +DE  GW LAA G   Q+   + LP+ VD
Sbjct:  148 EAFTQTGWKESQEAIGFLWDELHIIAEESKKDDDVDADGDGIKDVNQITGSELITRKTLLVMRKTHADKINRALGSLYVGFLSVAATLKVQFARTISLGVSIGNVARPVAETVLVPPLTHLVPKEYHHWIRPVIDYICKAVAVSVAWWIQRILSAYHSAIRGALMCTRALLRIANEKNWYSTTEDKTMLDEYAGWVLAAFGFMCQMYFGFALPFPVD 364          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17903.4735.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP22_ECTSI2.940e-14278.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z0S9_9STRA1.340e-8650.83Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1REG4_ALECA9.570e-6640.59Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
A0A8J2ETN3_9DINO4.840e-6443.51Hypothetical protein n=1 Tax=Amoebophrya sp. A120 ... [more]
A0A8J1Z0D1_9DINO1.800e-6242.68Hypothetical protein n=1 Tax=Amoebophrya sp. A25 T... [more]
A0A813D688_POLGL1.290e-6041.25Hypothetical protein (Fragment) n=1 Tax=Polarella ... [more]
A0A7S2RLK5_9STRA3.240e-5637.45Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2VT12_9DINO3.890e-5340.53Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
A0A7S2D5F5_9STRA5.330e-5238.73Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A7S1AZY3_NOCSC3.170e-5141.94Hypothetical protein (Fragment) n=1 Tax=Noctiluca ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17903contigH-elongata_contig17903:2566..7246 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score408.7
Seed ortholog evalue1.9e-111
Seed eggNOG ortholog2880.D7FP22
EggNOG OGs2C1MM@1,2S2PZ@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons7
Model size735
Cds size723
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17903.4735.1prot_H-elongata_contig17903.4735.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17903 2566..7234 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930033.1453156-CDS-H-elongata_contig17903:2565..26851622930033.1453156-CDS-H-elongata_contig17903:2565..2685Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17903 2566..2685 -
1691679254.619614-CDS-H-elongata_contig17903:2565..26851691679254.619614-CDS-H-elongata_contig17903:2565..2685Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17903 2566..2685 -
1622930033.1594539-CDS-H-elongata_contig17903:3105..31861622930033.1594539-CDS-H-elongata_contig17903:3105..3186Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17903 3106..3186 -
1691679254.640044-CDS-H-elongata_contig17903:3105..31861691679254.640044-CDS-H-elongata_contig17903:3105..3186Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17903 3106..3186 -
1622930033.174638-CDS-H-elongata_contig17903:3999..41491622930033.174638-CDS-H-elongata_contig17903:3999..4149Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17903 4000..4149 -
1691679254.6587415-CDS-H-elongata_contig17903:3999..41491691679254.6587415-CDS-H-elongata_contig17903:3999..4149Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17903 4000..4149 -
1622930033.193512-CDS-H-elongata_contig17903:4520..46671622930033.193512-CDS-H-elongata_contig17903:4520..4667Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17903 4521..4667 -
1691679254.6701086-CDS-H-elongata_contig17903:4520..46671691679254.6701086-CDS-H-elongata_contig17903:4520..4667Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17903 4521..4667 -
1622930033.2070346-CDS-H-elongata_contig17903:4869..49651622930033.2070346-CDS-H-elongata_contig17903:4869..4965Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17903 4870..4965 -
1691679254.6797097-CDS-H-elongata_contig17903:4869..49651691679254.6797097-CDS-H-elongata_contig17903:4869..4965Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17903 4870..4965 -
1622930033.2228832-CDS-H-elongata_contig17903:6445..65061622930033.2228832-CDS-H-elongata_contig17903:6445..6506Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17903 6446..6506 -
1691679254.6901052-CDS-H-elongata_contig17903:6445..65061691679254.6901052-CDS-H-elongata_contig17903:6445..6506Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17903 6446..6506 -
1622930033.234942-CDS-H-elongata_contig17903:7166..72341622930033.234942-CDS-H-elongata_contig17903:7166..7234Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17903 7167..7234 -
1691679254.7087848-CDS-H-elongata_contig17903:7166..72341691679254.7087848-CDS-H-elongata_contig17903:7166..7234Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17903 7167..7234 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930033.2485793-UTR-H-elongata_contig17903:7234..72461622930033.2485793-UTR-H-elongata_contig17903:7234..7246Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17903 7235..7246 -
1691679254.7183173-UTR-H-elongata_contig17903:7234..72461691679254.7183173-UTR-H-elongata_contig17903:7234..7246Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17903 7235..7246 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17903.4735.1

>prot_H-elongata_contig17903.4735.1 ID=prot_H-elongata_contig17903.4735.1|Name=mRNA_H-elongata_contig17903.4735.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=241bp
MTGGDKIWLCVRELKEDLEALRRANKEDNKRDDDNDGIPDVQQISPEKLL
TRKTALALRVINPDRATNALTGIWQGYMSVLVILKFRFAKVITLAVSIGN
NMRPTVAKILGPSLAFVVPKEYHQWIAPMINYLCKFVAMTIAWWIQRFVS
TVQSAIEGGLLFSRSLLRFISDTTSLKLDPDDTFIDEIVGWTLAACGAYF
QISHNWDLPWFVDLLLWPAYVLEAFLEWSVTWMNAPPTAL*
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mRNA from alignment at H-elongata_contig17903:2566..7246-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17903.4735.1 ID=mRNA_H-elongata_contig17903.4735.1|Name=mRNA_H-elongata_contig17903.4735.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4681bp|location=Sequence derived from alignment at H-elongata_contig17903:2566..7246- (Himanthalia elongata Himel1 dioecious)
CAGACTTTCAACATGACGGGGGGCGACAAGATCTGGCTCTGCGTGAGAGA GCTCAAGGAAGACCTAGAGGCGCTACGCAGGTAGATGATCTGCGCCCTCT TCTAGGGAAACGCGCCCGCCTGACCCTTAGTAAAAAGTAACGGAAACTGC TTTACATGGCAGCGCGAGTCAACGGTGGCTTAGCGCGATCAGGAAGGAAA GATCCACCCTGCGTCCCGGGAATGCGGTAGCCAATCCCATCCAACTCGAT GAACCGATGGATTGATCGATTCCGCGTGCGATACCACTACGTACATGATA ACCCGAGGGCTACCTTACCAGTTTGTTAGGGCGGATGGCTCTACCTACGG CATTGTTAACTGCTTGTATGAAAGCCGTGGTGGTGGGGAAGGGGCGTTGC GTCACAGGCGACGCGGTTAACCGTGCAAAGATAAGATATACTGTACGTTT GTACCGGCTGGACATGAGCTAAATCGACCCTTAGCCCAAACCTAAAACCT CGGAGCTAACCAGCAATATACCAATGTCCTGATTTATACCCAGCTAAGCG TCCAAAGCCTGCATTCTACCCTAGCCTATTCCAGAAGCGTCGGAATAATT TGGCGGGACTGTGTTACTATTCGGGCCGAATAAATTAATCACTAGTCCTG GAAGAGCCATACTTCAATGAAGCCACAGTCTGTATTTGTCCGTTCGAAGA CTGCTGTGTCGGTCCGACCCGATAATCCCAAAATGAGCAGGGCCAACAAG GAAGATAATAAGCGGGATGATGACAACGACGGCATCCCGGACGTTCAGCA GGTAAGTTTGACACGCTAGCGACCATATGGTTGGCTGGTTCCGCTTCCGT CGGACAGCTCCGTTGGTCTTCCGCGTGCCATGACGCAGATTTTTTTTTTT AACTTGAACTCATCCCAACCCTCCGAACATCCACACCTTCTTCGCGCCGT GAGAGGTGCAGTCCAGGGGACCAACCATCGTTAGGTTAGAATGTGTACAT TACTTTGCTACCTTTGAGCACAAAACTGTCACACGTGAGTATATTGTTTA GATGGTATAGATAAGTAAAGTATATGGTTACATTGTTCATATGTCTCGAT TAATTTCGGACTAAATATATTAGAGAGGCCGTTAGAGGATCATCGACCAC AATCAACCAGTATGCCTCCCGAGATTGAAAGCGTGAGATGCAGATTTCAT ATCTCGGAAGTCCAGCACTATATATCGCAAGGGCAGTCCTCGTGGGGTCG CACCAGGTGCTACACACACACACACACACAAACACACATCTCCTTGCATT TTTGCCATCGCTTTTCCTCTTATCATCGTTTTGTTTGTTTTATGTATTTT TCTAATTTTCTTGAGCGGATGTTGTCACTGTCGCCCGAGACACGGAACGC TAGCGACGAACAAGATAGGGTGAACGGATTCAAGGAGAACCAGGATTACC ATACACGCCAAAGGCCAAATCCTTGTCGAATCCGTTGACACCCGTGGATG TCCTCGATCCTTTTCGTTGGCGTTGCAGGCGTTTTGCGGCCTCAATTGTG TTGGTTGTGTGAGTGCTTGTAGGTGTGTGTTCCTAGAAAATGCCTCCGGC CGCGGGCCCCATATAACGGCTCGGGGACACTTTCGCAACCCTATTTCCAA AACCGTTTATAGGGCTGCACGTGTGGCCGTGATGCCTCCTCCCAAGCGTT TTCTCTGGTGGGGATCTACGACATCTAAAGTCTAGTATCCAGACTACGTA TGGTACTTTACCTGTTAGTATATTTAGTATCTTGGTAATAATGTCCTTAT CTGTAACCTCTCGATATATTATTTTTCAATGCTAGAGAGAGGGAGAGAGA AAATAGACGCGGTCGGGTGAATTTGAGAGTGTATTTCTCGCTCCTGTCTT AGATACGCATTTTACCGGCACTGACGAGGCAACGGGTGGTGCTATGCCTG GAATGGTCTTCCAACGATGTCGCTTCCAAAAAGGAAGCTCTCTTTTGAAG TTTTATTTCCATTATCGTTATGTTGTAGTGGTGGTACTTTGAAGCCAAAT TTCCTTCTTGTGCGTACAGTTATGACCGACAAGGCACGGCAGTAACATCT ACTATCAATAGTTGGAGATCGTTTGCTCGTTCGCGTCGAGCACGATTCTT CGGCGACTCCCGAAACAATTATGTCCTTCCATACATTCTGGATATCTCGA GCGTCGTGCGCGTCTCCCCGGGGCCCAGCCAAGACAGCGACCCCCTCCCA CCCTTGGCGCTTTCCGGTCCTCCTCTCTCAGATCAGCCCCGAGAAACTCC TGACCCGCAAGACTGCTCTCGCTCTCCGCGTCATCAACCCAGACAGGGCT ACAAACGCGTTGACGGGAATCTGGCAGGTGCGCTGCCAGGACGATTCTGC TCGTCGGCACGGTATACATCGATTTGCCGAGTCTACGATACGGTAGACAT GCCAGACCGTCGCACCAAGGAATTGCCGCATTCACATTTTCGCCGAATCG TCGTATCACCCAGGGCACGAAACTATCTAACGATCTTGTTTGCGCGCACG CAAATGTGCGTGCTTCCCGGATGCCGCAGGGCTACATGAGTGTGCTCGTC ATCCTGAAGTTCCGATTTGCCAAGGTCATTACTCTGGCCGTGAGTATCGG GAACAACATGAGGCCCACCGTGGCGAAGATTCTCGGCCCCTCCCTCGCCT TTGTCGTCCCGAAGGAGTACCACCAGGTGAGCTCGGCAAAGCAAGCGATG CTTCCAAGGCATCGTGCGTCCACGGAAAACTTTCATTTTTTCTATCTCCA GGCGGAGGCACTGGAAACGCTTCGTCGTTCTCGGAGGCGTTCTGCGGGGT GGGCCTCTTCATCACGAGGCTGCTTGCGCGCGGTTCTCTTGCACTTCGCG CGGGGCTCATCCGACCTTCAACTTTTGACGTTAGCTTCAACCCGCTGCTG ATAGTGCCATGTACTTATTTGAGGGTTGCGGAATCGCCACATTCCCCCGT GAGATGCCTTAATATATACGGTATATATATTAAAAAGGCGTGATCATTGG CGTCCCACCGACCGACGCCGGGAATGTTGCTTTACTCGTCCGCGCAGTGG ATCGCTCCTATGATCAACTACCTCTGCAAGTTCGTGGCCATGACCATCGC CTGGTGGATCCAGCGTTTTGTGTCTACGGTTCAAAGTGCCATCGAGGGCG GCCTGCTCTTCTCTCGATCGCTCTTGAGATTCATAAGCGACACTACGGTA AGGGCGGAGGGATGTGACCGACCAGTTTTTGTATATATGTGGATATAGGT GTATTTGAATTTATTAGGTGTATTTTATGTATTATTAATTGGTGTATCTT TATGTGCTATTAATAGGTATATTTGTATTATTACAGTAGGTGTAAATGTA AGTATTATGTACCAGGTATGTATTAGGTCTGTTCTTGTGTATTAGGTGTA TGTTTATGTATTAGGCTTATTTGTATGTATTAGGCGTATTTGTATGTACT AGGTGTATTCATATGAGTAGGTATATTCATGTTGCATTTTTTTGTGTCTA GGTTTAGTAGGAGGTGTAATAATATGTGTATTTGTGTGTAAAATAGAGAG GGGGGAAGAAAGATAAGCTGTTGGTTTGTGTCGAACGAAGGTCAAGGCGG TGTTTTACGTATTACTTCGCTGGGATCGATTACATCAGGACACAAACGCG CTGGATAGGTTTTGACTGGTGCAGACCGACGCCGCGCAAGGTTTCATCAG CATCCTTTTCGTGCCTCTATTGTTAACTACTTTCAAATTAGGGGGGCCCA CACGTGGCTGGCTCATGGCGAACTTGCTTGCTTTTCGAAAGCTCTGGTTG TTTTTCGCCCAACGTGACACGTTCGTTCCACAGCTACCCCCACCCCCACC CCCTTCCATGGCTTCACGTTTGCGTCGTTTGTTGGATGCTGGAGACTCGG TCGGATGGTTGGCACAATATGAGTTTGACCAAATCAACCGAGCATCAGGC GCGCCCAAACCTTGAACACGATGCCACCCCTTGTACTTACTCCTTGTGAT GATTGATAAGTCTTTAAAGCTGGACCCAGACGACACTTTCATCGACGAAA TCGTCGGCTGGACCCTGGCCGCTTGCGGAGCGTACTTCCAGGTTCGCTGG TGTCTATTGGCGTGCAGGAACTTCAGTCACCAGTAGTATTGGCCTTTCCC CGGTGCTTCCAGACACCGTCGTTAGTTCTGTAGGGGGATAAAAAGTCCCG TTGCTTCTGTAAAGAAAAAAAATAAATCTTGTTAGGACACGAGTTTTGGC TTGAACAGAACGGAGCGGGCGCCTGGTGTTGCACGACCCGTTTTGGAGGC AGGGTCAGACGCAGCGGGTTATCAATCAATCAATGATTCCCAACGATTTG CGTGTTGGGAGAACCAACTGCCGTCTATAAACCAGCGTTTCCCAGCTCAG GACATGCTCGTCCGAACATGTTTGTCTTGGGTTGCTGATTGATCTATTAA TGTCGACCAACCTGTTTTGTCGCTGTCATTTTCTTCCCTTTCTTGTTCAT GAAATCCTCAGATCAGCCACAACTGGGATCTCCCATGGTTTGTGGACCTT TTGCTCTGGCCTGCCTACGTCCTCGAAGCTTTTTTGGAATGGAGCGTAAC TTGGATGAATGCCCCACCGACAGCGCTGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig17903:2566..7246-

>mRNA_H-elongata_contig17903.4735.1 ID=mRNA_H-elongata_contig17903.4735.1|Name=mRNA_H-elongata_contig17903.4735.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1446bp|location=Sequence derived from alignment at H-elongata_contig17903:2566..7246- (Himanthalia elongata Himel1 dioecious)
ATGACGGGGGGCGACAAGATCTGGCTCTGCGTGAGAGAGCTCAAGGAAGA
CCTAGAGGCGCTACGCAGATGACGGGGGGCGACAAGATCTGGCTCTGCGT
GAGAGAGCTCAAGGAAGACCTAGAGGCGCTACGCAGGGCCAACAAGGAAG
ATAATAAGCGGGATGATGACAACGACGGCATCCCGGACGTTCAGCAGGGC
CAACAAGGAAGATAATAAGCGGGATGATGACAACGACGGCATCCCGGACG
TTCAGCAGATCAGCCCCGAGAAACTCCTGACCCGCAAGACTGCTCTCGCT
CTCCGCGTCATCAACCCAGACAGGGCTACAAACGCGTTGACGGGAATCTG
GCAGATCAGCCCCGAGAAACTCCTGACCCGCAAGACTGCTCTCGCTCTCC
GCGTCATCAACCCAGACAGGGCTACAAACGCGTTGACGGGAATCTGGCAG
GGCTACATGAGTGTGCTCGTCATCCTGAAGTTCCGATTTGCCAAGGTCAT
TACTCTGGCCGTGAGTATCGGGAACAACATGAGGCCCACCGTGGCGAAGA
TTCTCGGCCCCTCCCTCGCCTTTGTCGTCCCGAAGGAGTACCACCAGGGC
TACATGAGTGTGCTCGTCATCCTGAAGTTCCGATTTGCCAAGGTCATTAC
TCTGGCCGTGAGTATCGGGAACAACATGAGGCCCACCGTGGCGAAGATTC
TCGGCCCCTCCCTCGCCTTTGTCGTCCCGAAGGAGTACCACCAGTGGATC
GCTCCTATGATCAACTACCTCTGCAAGTTCGTGGCCATGACCATCGCCTG
GTGGATCCAGCGTTTTGTGTCTACGGTTCAAAGTGCCATCGAGGGCGGCC
TGCTCTTCTCTCGATCGCTCTTGAGATTCATAAGCGACACTACGTGGATC
GCTCCTATGATCAACTACCTCTGCAAGTTCGTGGCCATGACCATCGCCTG
GTGGATCCAGCGTTTTGTGTCTACGGTTCAAAGTGCCATCGAGGGCGGCC
TGCTCTTCTCTCGATCGCTCTTGAGATTCATAAGCGACACTACGTCTTTA
AAGCTGGACCCAGACGACACTTTCATCGACGAAATCGTCGGCTGGACCCT
GGCCGCTTGCGGAGCGTACTTCCAGTCTTTAAAGCTGGACCCAGACGACA
CTTTCATCGACGAAATCGTCGGCTGGACCCTGGCCGCTTGCGGAGCGTAC
TTCCAGATCAGCCACAACTGGGATCTCCCATGGTTTGTGGACCTTTTGCT
CTGGCCTGCCTACGTCCTCGAAGCTTTTTTGGAATGGAGCGTAACTTGGA
TGAATGCCCCACCGACAGCGCTGTAGATCAGCCACAACTGGGATCTCCCA
TGGTTTGTGGACCTTTTGCTCTGGCCTGCCTACGTCCTCGAAGCTTTTTT
GGAATGGAGCGTAACTTGGATGAATGCCCCACCGACAGCGCTGTAG
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