mRNA_H-elongata_contig178989.4731.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig178989.4731.1
Unique NamemRNA_H-elongata_contig178989.4731.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig178989.4731.1 vs. uniprot
Match: A0A6H5KVR5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR5_9PHAE)

HSP 1 Score: 189 bits (480), Expect = 1.470e-54
Identity = 111/280 (39.64%), Postives = 153/280 (54.64%), Query Frame = 1
Query:    1 DIMEFHQVLGHPGERITRDTARMAGVQLSGTWRPCVHCSESRVRRYAVPKSTENRSDTRAGRLFIDLTGPFHETSIGGNRFAMLCVDDFTRFKFVRFLKHKSDATDALRGVINDYLAPEGLK--IGIIRTDGGGEWCG-QFLSFMSEHGIKRESMPPYTPQYNGVAERALGLLRDKTVA-------LLRGVMEGKSDHLWAEAMAYACEMSNRCTSSSLDSGTSPHELWYGHRPTFDGILPFGTVGYLRRSKPKHKLAPRGAKCIMLGLAADCPRNTYRV 810
            DI EFH +  H  E + R TA+  G +L G    C  CS S+  R  + + T+ RSD + GR+F DL G     S+GG  + ++  DDFTR  ++ FL++KSDA  A R  +    A  G+   + I+R+D GG++ G  F S  +E  IK+E  P Y+PQYNGVAER LGL+ +  +A       L   V   K+D LWAEAM +ACE  N    S+     SP+E+WYG  P      PF    Y R  +P  KL P+G  C  +G + D PR+ +RV
Sbjct:   33 DINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFADLGGRKDIASVGGKHYPIIVKDDFTRHTWMYFLRNKSDAGSAFRTFLASVRA-NGVPSFVEIVRSDNGGKFFGGDFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFSKPAYCRWQRPS-KLLPKGESCFYVGPSRDHPRDCHRV 309          
BLAST of mRNA_H-elongata_contig178989.4731.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE)

HSP 1 Score: 191 bits (485), Expect = 3.210e-53
Identity = 115/292 (39.38%), Postives = 160/292 (54.79%), Query Frame = 1
Query:    1 DIMEFHQVLGHPGERITRDTARMAGVQLSGTWRPCVHCSESRVRRYAVPKSTENRSDTRAGRLFIDLTGPFHETSIGGNRFAMLCVDDFTRFKFVRFLKHKSDATDALR---GVINDYLAPEGLKIGIIRTDGGGEWCG-QFLSFMSEHGIKRESMPPYTPQYNGVAERALGLLRDKTVA-------LLRGVMEGKSDHLWAEAMAYACEMSNRCTSSSLDSGTSPHELWYGHRPTFDGILPFGTVGYLRRSKPKHKLAPRGAKCIMLGLAADCPRNTYRVRDLTTGQIIHR 843
            DI EFH +  H  E + R TA+  G +L G    C  CS S+  R  + + T+ RSD + GR+F+DL G     S+GG  + M+  DDFTR  ++ FLK++SDA  A R     +   + P  ++I  +R+D GGE+ G +F S  +E  IK+E  P Y+PQYNGVAER LGL+ +  +A       L   V   K+D LWAEAM +ACE  N    S+     SP+E+WYG  P      PF    Y R  +P  KL P+G  C  +G + D PR+ +RV  LT  + I +
Sbjct:  253 DINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWMYFLKNESDAGGAFRTFLASVRANIVPSFVEI--VRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFLKPAYCRWQRPT-KLLPKGESCFYVGPSRDHPRDCHRV--LTRARTIQK 538          
BLAST of mRNA_H-elongata_contig178989.4731.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE)

HSP 1 Score: 194 bits (494), Expect = 1.300e-52
Identity = 111/280 (39.64%), Postives = 157/280 (56.07%), Query Frame = 1
Query:    1 DIMEFHQVLGHPGERITRDTARMAGVQLSGTWRPCVHCSESRVRRYAVPKSTENRSDTRAGRLFIDLTGPFHETSIGGNRFAMLCVDDFTRFKFVRFLKHKSDATDALRGVINDYLAPEGLK--IGIIRTDGGGEWCG-QFLSFMSEHGIKRESMPPYTPQYNGVAERALGLLRDKTVA-------LLRGVMEGKSDHLWAEAMAYACEMSNRCTSSSLDSGTSPHELWYGHRPTFDGILPFGTVGYLRRSKPKHKLAPRGAKCIMLGLAADCPRNTYRV 810
            D+ EFH +  H  + + R TA+  G +L G    C  CS ++  +  + + T++RSD + GR+F+DL G     S+GG  + M+  DDFTR  ++ FLKHKSDA  A R  +    A +G+   + I+R+D GGE+ G +F S  +E  IK+E  P Y+PQYNGVAER LGL+ +  +A       L   V   K+D LWAEAM +ACE  N    S+     SP+E+WYG  P      PF    Y R  +P  KL P+G  C  +G + D PR+ +RV
Sbjct:  665 DVNEFHNIYAHSHKGLLRTTAKRLGTELVGEMHECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRA-DGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGE-PRPARPYPFLKPAYCRWQRPS-KLLPKGESCFYVGPSRDHPRDCHRV 941          
BLAST of mRNA_H-elongata_contig178989.4731.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 194 bits (494), Expect = 1.320e-52
Identity = 111/280 (39.64%), Postives = 157/280 (56.07%), Query Frame = 1
Query:    1 DIMEFHQVLGHPGERITRDTARMAGVQLSGTWRPCVHCSESRVRRYAVPKSTENRSDTRAGRLFIDLTGPFHETSIGGNRFAMLCVDDFTRFKFVRFLKHKSDATDALRGVINDYLAPEGLK--IGIIRTDGGGEWCG-QFLSFMSEHGIKRESMPPYTPQYNGVAERALGLLRDKTVA-------LLRGVMEGKSDHLWAEAMAYACEMSNRCTSSSLDSGTSPHELWYGHRPTFDGILPFGTVGYLRRSKPKHKLAPRGAKCIMLGLAADCPRNTYRV 810
            D+ EFH +  H  + + R TA+  G +L G    C  CS ++  +  + + T++RSD + GR+F+DL G     S+GG  + M+  DDFTR  ++ FLKHKSDA  A R  +    A +G+   + I+R+D GGE+ G +F S  +E  IK+E  P Y+PQYNGVAER LGL+ +  +A       L   V   K+D LWAEAM +ACE  N    S+     SP+E+WYG  P      PF    Y R  +P  KL P+G  C  +G + D PR+ +RV
Sbjct:  372 DVNEFHNIYAHSHKGLLRTTAKRLGTELVGEMHECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRA-DGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGE-PRPARPYPFLKPAYCRWQRPS-KLLPKGESCFYVGPSRDHPRDCHRV 648          
BLAST of mRNA_H-elongata_contig178989.4731.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE)

HSP 1 Score: 191 bits (485), Expect = 1.110e-51
Identity = 112/280 (40.00%), Postives = 154/280 (55.00%), Query Frame = 1
Query:    1 DIMEFHQVLGHPGERITRDTARMAGVQLSGTWRPCVHCSESRVRRYAVPKSTENRSDTRAGRLFIDLTGPFHETSIGGNRFAMLCVDDFTRFKFVRFLKHKSDATDALRGVINDYLAPEGLK--IGIIRTDGGGEWCG-QFLSFMSEHGIKRESMPPYTPQYNGVAERALGLLRDKTVA-------LLRGVMEGKSDHLWAEAMAYACEMSNRCTSSSLDSGTSPHELWYGHRPTFDGILPFGTVGYLRRSKPKHKLAPRGAKCIMLGLAADCPRNTYRV 810
            DI EFH +  H  E + R TA+  G +L G    C  CS S+  R  + + T+ RSD + GR+F+DL G     S+GG  + M+  DDFTR  ++ FL++KSDA  A R  +    A  G+   + I+R+D GGE+ G +F S  +E  IK+E  P Y+PQYNGVAER LGL+ +  +A       L   V   K+D LWAEAM +ACE  N    S+      P+E+WYG  P      PF    Y R  +P  KL P+G  C  +G + D PR+ +RV
Sbjct:  131 DINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDSASVGGKHYPMIVKDDFTRRTWMYFLRNKSDAGSAFRTFLASVRA-NGVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMPPYEMWYGE-PRPARPYPFLKPAYCRWQRPT-KLLPKGESCFYVGPSRDHPRDCHRV 407          
BLAST of mRNA_H-elongata_contig178989.4731.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE)

HSP 1 Score: 191 bits (484), Expect = 1.540e-51
Identity = 112/284 (39.44%), Postives = 156/284 (54.93%), Query Frame = 1
Query:    1 DIMEFHQVLGHPGERITRDTARMAGVQLSGTWRPCVHCSESRVRRYAVPKSTENRSDTRAGRLFIDLTGPFHETSIGGNRFAMLCVDDFTRFKFVRFLKHKSDATDALRGVINDYLAPEGLK--IGIIRTDGGGEWCG-QFLSFMSEHGIKRESMPPYTPQYNGVAERALGLLRDKTVA-------LLRGVMEGKSDHLWAEAMAYACEMSNRCTSSSLDSGTSPHELWYGH----RPTFDGILPFGTVGYLRRSKPKHKLAPRGAKCIMLGLAADCPRNTYRV 810
            D+ EFH +  H  E + R TA+  G++L+G    C  CS S+  +  +   T+ RSD + GR+F+DL G     S+GG  + M+  DDFTR  ++ FLK KSDA  A R  +    A +G+   + I+R+D GGE+ G +F S  +E  IK+E  P Y+PQYNGVAER LGL+    +A       L   V   K+D LWAEAM +ACE  N    S+     SP+E+W+G     RP      PF    Y R  +P  KL P+G  C  +G + D PR+ +RV
Sbjct:  571 DVNEFHNIYAHSHEGLLRTTAKRLGIELTGKMHACTGCSMSKAFKKGIAHETKCRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRTWMYFLKSKSDAASAFRSFLASVRA-DGIPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEAINHTACSANPDSKSPYEMWHGEASHARP-----YPFLKPAYCRWQRPS-KLLPKGEACFYVGPSRDHPRDCHRV 847          
BLAST of mRNA_H-elongata_contig178989.4731.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 191 bits (484), Expect = 2.820e-51
Identity = 113/280 (40.36%), Postives = 154/280 (55.00%), Query Frame = 1
Query:    1 DIMEFHQVLGHPGERITRDTARMAGVQLSGTWRPCVHCSESRVRRYAVPKSTENRSDTRAGRLFIDLTGPFHETSIGGNRFAMLCVDDFTRFKFVRFLKHKSDATDALRGVINDYLAPEGLK--IGIIRTDGGGEWCG-QFLSFMSEHGIKRESMPPYTPQYNGVAERALGLLRDKTVA-------LLRGVMEGKSDHLWAEAMAYACEMSNRCTSSSLDSGTSPHELWYGHRPTFDGILPFGTVGYLRRSKPKHKLAPRGAKCIMLGLAADCPRNTYRV 810
            DI EFH +  H  E + R TA+  G +L G    C  CS S+  R  +   T+ RSD + GR+F+DL G     S+GG  + M+  DDFTR  ++ FL++KSDA  A R  +    A  G+   + I+R+D GGE+ G +F S  +E  IK+E  P Y+PQYNGVAER LGL+ +  +A       L   V   K+D LWAEAM +ACE  N    S+     SP+E+WYG  P      PF    Y R  +P  KL P+G  C  +G + D PR+ +RV
Sbjct:  186 DINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVGETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWICFLRNKSDAGSAFRTFLASVRA-NGVPSFVEIVRSDNGGEFFGGEFTSVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFLKPAYCRWQRPT-KLLPKGESCFYVGPSRDHPRDCHRV 462          
BLAST of mRNA_H-elongata_contig178989.4731.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE)

HSP 1 Score: 187 bits (476), Expect = 3.360e-50
Identity = 110/281 (39.15%), Postives = 158/281 (56.23%), Query Frame = 1
Query:    1 DIMEFHQVLGHPGERITRDTARMAGVQLSGTWRPCVHCSESRVRRYAVPKSTENRSDTRAGRLFIDLTGPFHETSIGGNRFAMLCVDDFTRFKFVRFLKHKSDATDALRGVINDYLAPEGLK--IGIIRTDGGGEWCG-QFLSFMSEHGIKRESMPPYTPQYNGVAERALGLLRDKTVA-------LLRGVMEGKSDHLWAEAMAYACEMSNRCTSSSLDSGTSPHELWYGH-RPTFDGILPFGTVGYLRRSKPKHKLAPRGAKCIMLGLAADCPRNTYRV 810
            D+ +FH + GH  E + R TA+  G++L+G    C  CS  +  R A+   T N SD + GR+F++L G     SIGG  + M+  DDFTR  ++ FL+ KSDA  A R  + +  A +G+   I I+R+D GGE+ G +F S  +E  IK+E  P ++P++NGVAER LGL+ +  +A       L   V   K+D LWAEAM +ACE  N    S+     SP+E+WYG  RP      PF    Y +  +P  KL P+G  C  +G + D PR+ +RV
Sbjct:  392 DVNDFHNIYGHAHEGMLRTTAKRLGIELTGKMHACSGCSMGKAIRKAIAHVTTNSSDKKLGRVFVNLGGKKGVASIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFLANVRA-DGIPSLIEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARPARP--YPFLKPAYCKWQRPS-KLLPKGESCFYVGPSRDHPRDCHRV 668          
BLAST of mRNA_H-elongata_contig178989.4731.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 4.460e-46
Identity = 110/272 (40.44%), Postives = 148/272 (54.41%), Query Frame = 1
Query:    1 DIMEFHQVLGHPGERITRDTARMAGVQLSG-TWRPCVHCSESRVRRYAVPKSTENRSDTRAGRLFIDLTGPFHETSIGGNRFAMLCVDDFTRFKFVRFLKHKSDATDALRGVINDYLAPE-GLKIGIIRTDGGGEWCGQFLSFMSEHGIKRESMPPYTPQYNGVAERALGLLRDKTVALLRGVMEGKSDH-----LWAEAMAYACEMSNRCTSSSLDSG-TSPHELWYGHRPTFDGILPFGTVGYLRRSKPKHKLAPRGAKCIMLGLAADCP 792
            D+   H   GH  E + + TA+  GVQL+G    PC+ CS S+ +   + KST+ R+  +  RLF++L G     SIGGN + ++  DD TR+  V FLKHKSDA  A    + DY A     ++ + RTDGGGE+ GQF       GIK+E  PP TP+YNGVAERALGLL D  +A      E   D      LWAEA++ AC   N CT+++ + G  SP EL++G  P      PF     + +S+ K +  PR  K   LGL    P
Sbjct:  134 DLNSDHNSHGHTHEELLQKTAKQQGVQLTGGPLLPCLGCSMSKGQVKPISKSTDTRAANKLFRLFLNLGGRMQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFPDAPVSPGLWAEAISCACHQMN-CTATTGNPGHKSPEELFHGTPPPVGSTHPF-LKPLVFKSRRKARSQPRARKDGTLGLPTITP 403          
BLAST of mRNA_H-elongata_contig178989.4731.1 vs. uniprot
Match: A0A6H5K1N9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N9_9PHAE)

HSP 1 Score: 169 bits (429), Expect = 6.120e-44
Identity = 98/279 (35.13%), Postives = 149/279 (53.41%), Query Frame = 1
Query:    1 DIMEFHQVLGHPGERITRDTARMAGVQLSGTWRPCVHCSESRVRRYAVPKSTENRSDTRAGRLFIDLTGPFHETSIGGNRFAMLCVDDFTRFKFVRFLKHKSDATDALRGVINDYLAPEGLK-IGIIRTDGGGEWC-GQFLSFMSEHGIKRESMPPYTPQYNGVAERALGLLRDKTVA-------LLRGVMEGKSDHLWAEAMAYACEMSNRCTSSSLDSGTSPHELWYGHRPTFDGILPFGTVGYLRRSKPKHKLAPRGAKCIMLGLAADCPRNTYRV 810
            DI +FH   GH  E + R TA+  G  L G  R C+ CS ++     +P  T  R+  +  R F++L+G     S+GG  + ++  DD+TR+  V FLKHKSDA +A    + +  A      + ++R+D GGE+  G+F     ++ IK+E  P ++P+YNGVAERALGL++D  +A       L  G    +S  LWAEA+A++C   N  +++S     SP+E+W+GH P      PF     + + K  HK  P   KC  LG   +  R+  R+
Sbjct:  307 DINDFHCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSEPIPNKTSTRAFKKLQRFFVELSGKARAQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLKEKRADGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAAIAARIQAPTLYPGAPNYRS--LWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPFLKPA-VYKVKRTHKSEPTAQKCFYLGPGINTNRDCVRI 582          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig178989.4731.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVR5_9PHAE1.470e-5439.64Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JV76_9PHAE3.210e-5339.38Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JBA7_9PHAE1.300e-5239.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZH7_9PHAE1.320e-5239.64Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L3Y0_9PHAE1.110e-5140.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K2M6_9PHAE1.540e-5139.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRL9_9PHAE2.820e-5140.36Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JH25_9PHAE3.360e-5039.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LL52_9PHAE4.460e-4640.44Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K1N9_9PHAE6.120e-4435.13Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig178989contigH-elongata_contig178989:310..1161 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score131.0
Seed ortholog evalue9e-28
Seed eggNOG ortholog4558.Sb07g028153.1
EggNOG free text desc.GAG-pre-integrase domain
EggNOG OGs37THH@33090,3GG2K@35493,3IMWS@38820,3M2QC@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size852
Cds size846
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930032.6857126-UTR-H-elongata_contig178989:309..3151622930032.6857126-UTR-H-elongata_contig178989:309..315Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig178989 310..315 +
1691679254.4326353-UTR-H-elongata_contig178989:309..3151691679254.4326353-UTR-H-elongata_contig178989:309..315Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig178989 310..315 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930032.698458-CDS-H-elongata_contig178989:315..11611622930032.698458-CDS-H-elongata_contig178989:315..1161Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig178989 316..1161 +
1691679254.4479527-CDS-H-elongata_contig178989:315..11611691679254.4479527-CDS-H-elongata_contig178989:315..1161Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig178989 316..1161 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig178989.4731.1prot_H-elongata_contig178989.4731.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig178989 316..1161 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig178989.4731.1

>prot_H-elongata_contig178989.4731.1 ID=prot_H-elongata_contig178989.4731.1|Name=mRNA_H-elongata_contig178989.4731.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=282bp
MEFHQVLGHPGERITRDTARMAGVQLSGTWRPCVHCSESRVRRYAVPKST
ENRSDTRAGRLFIDLTGPFHETSIGGNRFAMLCVDDFTRFKFVRFLKHKS
DATDALRGVINDYLAPEGLKIGIIRTDGGGEWCGQFLSFMSEHGIKRESM
PPYTPQYNGVAERALGLLRDKTVALLRGVMEGKSDHLWAEAMAYACEMSN
RCTSSSLDSGTSPHELWYGHRPTFDGILPFGTVGYLRRSKPKHKLAPRGA
KCIMLGLAADCPRNTYRVRDLTTGQIIHRQSV
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mRNA from alignment at H-elongata_contig178989:310..1161+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig178989.4731.1 ID=mRNA_H-elongata_contig178989.4731.1|Name=mRNA_H-elongata_contig178989.4731.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=852bp|location=Sequence derived from alignment at H-elongata_contig178989:310..1161+ (Himanthalia elongata Himel1 dioecious)
GATATAATGGAGTTCCATCAGGTCCTGGGACATCCGGGAGAGCGGATCAC GCGCGATACGGCCCGTATGGCGGGCGTGCAGCTGAGTGGAACCTGGCGAC CATGCGTGCACTGCTCCGAATCTAGGGTGCGGCGATACGCCGTGCCTAAA TCCACGGAGAATCGCTCCGACACACGCGCAGGCCGGCTGTTTATCGACCT CACAGGCCCTTTCCACGAGACATCTATCGGAGGGAACAGGTTCGCCATGC TGTGCGTCGACGACTTCACCCGCTTCAAATTTGTACGTTTCCTCAAGCAC AAGAGCGACGCCACGGATGCATTAAGGGGCGTCATCAACGACTACCTCGC GCCTGAGGGCCTTAAGATCGGCATCATTCGCACGGACGGCGGAGGAGAAT GGTGCGGCCAGTTCCTGTCCTTCATGAGCGAGCACGGAATCAAACGCGAA TCCATGCCCCCTTACACTCCCCAGTACAACGGCGTCGCGGAACGGGCGCT GGGGCTACTGCGTGACAAGACCGTGGCCCTGCTGCGAGGAGTAATGGAGG GTAAGAGCGACCACCTATGGGCGGAAGCCATGGCTTACGCATGCGAAATG TCGAACCGATGCACCTCCTCCTCCCTCGACAGCGGCACGTCGCCACATGA GCTATGGTACGGCCACCGACCAACATTCGACGGCATCCTTCCATTCGGTA CCGTGGGATATTTACGACGGTCGAAGCCGAAGCACAAGCTAGCCCCCCGT GGGGCGAAGTGCATCATGCTCGGGCTGGCCGCCGACTGCCCGCGGAACAC TTACCGGGTGCGCGACCTCACCACTGGCCAGATCATTCACCGCCAATCCG TT
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Coding sequence (CDS) from alignment at H-elongata_contig178989:310..1161+

>mRNA_H-elongata_contig178989.4731.1 ID=mRNA_H-elongata_contig178989.4731.1|Name=mRNA_H-elongata_contig178989.4731.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1692bp|location=Sequence derived from alignment at H-elongata_contig178989:310..1161+ (Himanthalia elongata Himel1 dioecious)
ATGGAGTTCCATCAGGTCCTGGGACATCCGGGAGAGCGGATCACGCGCGA
TACGGCCCGTATGGCGGGCGTGCAGCTGAGTGGAACCTGGCGACCATGCG
TGCACTGCTCCGAATCTAGGGTGCGGCGATACGCCGTGCCTAAATCCACG
GAGAATCGCTCCGACACACGCGCAGGCCGGCTGTTTATCGACCTCACAGG
CCCTTTCCACGAGACATCTATCGGAGGGAACAGGTTCGCCATGCTGTGCG
TCGACGACTTCACCCGCTTCAAATTTGTACGTTTCCTCAAGCACAAGAGC
GACGCCACGGATGCATTAAGGGGCGTCATCAACGACTACCTCGCGCCTGA
GGGCCTTAAGATCGGCATCATTCGCACGGACGGCGGAGGAGAATGGTGCG
GCCAGTTCCTGTCCTTCATGAGCGAGCACGGAATCAAACGCGAATCCATG
CCCCCTTACACTCCCCAGTACAACGGCGTCGCGGAACGGGCGCTGGGGCT
ACTGCGTGACAAGACCGTGGCCCTGCTGCGAGGAGTAATGGAGGGTAAGA
GCGACCACCTATGGGCGGAAGCCATGGCTTACGCATGCGAAATGTCGAAC
CGATGCACCTCCTCCTCCCTCGACAGCGGCACGTCGCCACATGAGCTATG
GTACGGCCACCGACCAACATTCGACGGCATCCTTCCATTCGGTACCGTGG
GATATTTACGACGGTCGAAGCCGAAGCACAAGCTAGCCCCCCGTGGGGCG
AAGTGCATCATGCTCGGGCTGGCCGCCGACTGCCCGCGGAACACTTACCG
GGTGCGCGACCTCACCACTGGCCAGATCATTCACCGCCAATCCGTTATGG
AGTTCCATCAGGTCCTGGGACATCCGGGAGAGCGGATCACGCGCGATACG
GCCCGTATGGCGGGCGTGCAGCTGAGTGGAACCTGGCGACCATGCGTGCA
CTGCTCCGAATCTAGGGTGCGGCGATACGCCGTGCCTAAATCCACGGAGA
ATCGCTCCGACACACGCGCAGGCCGGCTGTTTATCGACCTCACAGGCCCT
TTCCACGAGACATCTATCGGAGGGAACAGGTTCGCCATGCTGTGCGTCGA
CGACTTCACCCGCTTCAAATTTGTACGTTTCCTCAAGCACAAGAGCGACG
CCACGGATGCATTAAGGGGCGTCATCAACGACTACCTCGCGCCTGAGGGC
CTTAAGATCGGCATCATTCGCACGGACGGCGGAGGAGAATGGTGCGGCCA
GTTCCTGTCCTTCATGAGCGAGCACGGAATCAAACGCGAATCCATGCCCC
CTTACACTCCCCAGTACAACGGCGTCGCGGAACGGGCGCTGGGGCTACTG
CGTGACAAGACCGTGGCCCTGCTGCGAGGAGTAATGGAGGGTAAGAGCGA
CCACCTATGGGCGGAAGCCATGGCTTACGCATGCGAAATGTCGAACCGAT
GCACCTCCTCCTCCCTCGACAGCGGCACGTCGCCACATGAGCTATGGTAC
GGCCACCGACCAACATTCGACGGCATCCTTCCATTCGGTACCGTGGGATA
TTTACGACGGTCGAAGCCGAAGCACAAGCTAGCCCCCCGTGGGGCGAAGT
GCATCATGCTCGGGCTGGCCGCCGACTGCCCGCGGAACACTTACCGGGTG
CGCGACCTCACCACTGGCCAGATCATTCACCGCCAATCCGTT
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