mRNA_H-elongata_contig178989.4731.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig178989.4731.1 vs. uniprot
Match: A0A6H5KVR5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR5_9PHAE) HSP 1 Score: 189 bits (480), Expect = 1.470e-54 Identity = 111/280 (39.64%), Postives = 153/280 (54.64%), Query Frame = 1
Query: 1 DIMEFHQVLGHPGERITRDTARMAGVQLSGTWRPCVHCSESRVRRYAVPKSTENRSDTRAGRLFIDLTGPFHETSIGGNRFAMLCVDDFTRFKFVRFLKHKSDATDALRGVINDYLAPEGLK--IGIIRTDGGGEWCG-QFLSFMSEHGIKRESMPPYTPQYNGVAERALGLLRDKTVA-------LLRGVMEGKSDHLWAEAMAYACEMSNRCTSSSLDSGTSPHELWYGHRPTFDGILPFGTVGYLRRSKPKHKLAPRGAKCIMLGLAADCPRNTYRV 810
DI EFH + H E + R TA+ G +L G C CS S+ R + + T+ RSD + GR+F DL G S+GG + ++ DDFTR ++ FL++KSDA A R + A G+ + I+R+D GG++ G F S +E IK+E P Y+PQYNGVAER LGL+ + +A L V K+D LWAEAM +ACE N S+ SP+E+WYG P PF Y R +P KL P+G C +G + D PR+ +RV
Sbjct: 33 DINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFADLGGRKDIASVGGKHYPIIVKDDFTRHTWMYFLRNKSDAGSAFRTFLASVRA-NGVPSFVEIVRSDNGGKFFGGDFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFSKPAYCRWQRPS-KLLPKGESCFYVGPSRDHPRDCHRV 309
BLAST of mRNA_H-elongata_contig178989.4731.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE) HSP 1 Score: 191 bits (485), Expect = 3.210e-53 Identity = 115/292 (39.38%), Postives = 160/292 (54.79%), Query Frame = 1
Query: 1 DIMEFHQVLGHPGERITRDTARMAGVQLSGTWRPCVHCSESRVRRYAVPKSTENRSDTRAGRLFIDLTGPFHETSIGGNRFAMLCVDDFTRFKFVRFLKHKSDATDALR---GVINDYLAPEGLKIGIIRTDGGGEWCG-QFLSFMSEHGIKRESMPPYTPQYNGVAERALGLLRDKTVA-------LLRGVMEGKSDHLWAEAMAYACEMSNRCTSSSLDSGTSPHELWYGHRPTFDGILPFGTVGYLRRSKPKHKLAPRGAKCIMLGLAADCPRNTYRVRDLTTGQIIHR 843
DI EFH + H E + R TA+ G +L G C CS S+ R + + T+ RSD + GR+F+DL G S+GG + M+ DDFTR ++ FLK++SDA A R + + P ++I +R+D GGE+ G +F S +E IK+E P Y+PQYNGVAER LGL+ + +A L V K+D LWAEAM +ACE N S+ SP+E+WYG P PF Y R +P KL P+G C +G + D PR+ +RV LT + I +
Sbjct: 253 DINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWMYFLKNESDAGGAFRTFLASVRANIVPSFVEI--VRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFLKPAYCRWQRPT-KLLPKGESCFYVGPSRDHPRDCHRV--LTRARTIQK 538
BLAST of mRNA_H-elongata_contig178989.4731.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE) HSP 1 Score: 194 bits (494), Expect = 1.300e-52 Identity = 111/280 (39.64%), Postives = 157/280 (56.07%), Query Frame = 1
Query: 1 DIMEFHQVLGHPGERITRDTARMAGVQLSGTWRPCVHCSESRVRRYAVPKSTENRSDTRAGRLFIDLTGPFHETSIGGNRFAMLCVDDFTRFKFVRFLKHKSDATDALRGVINDYLAPEGLK--IGIIRTDGGGEWCG-QFLSFMSEHGIKRESMPPYTPQYNGVAERALGLLRDKTVA-------LLRGVMEGKSDHLWAEAMAYACEMSNRCTSSSLDSGTSPHELWYGHRPTFDGILPFGTVGYLRRSKPKHKLAPRGAKCIMLGLAADCPRNTYRV 810
D+ EFH + H + + R TA+ G +L G C CS ++ + + + T++RSD + GR+F+DL G S+GG + M+ DDFTR ++ FLKHKSDA A R + A +G+ + I+R+D GGE+ G +F S +E IK+E P Y+PQYNGVAER LGL+ + +A L V K+D LWAEAM +ACE N S+ SP+E+WYG P PF Y R +P KL P+G C +G + D PR+ +RV
Sbjct: 665 DVNEFHNIYAHSHKGLLRTTAKRLGTELVGEMHECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRA-DGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGE-PRPARPYPFLKPAYCRWQRPS-KLLPKGESCFYVGPSRDHPRDCHRV 941
BLAST of mRNA_H-elongata_contig178989.4731.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE) HSP 1 Score: 194 bits (494), Expect = 1.320e-52 Identity = 111/280 (39.64%), Postives = 157/280 (56.07%), Query Frame = 1
Query: 1 DIMEFHQVLGHPGERITRDTARMAGVQLSGTWRPCVHCSESRVRRYAVPKSTENRSDTRAGRLFIDLTGPFHETSIGGNRFAMLCVDDFTRFKFVRFLKHKSDATDALRGVINDYLAPEGLK--IGIIRTDGGGEWCG-QFLSFMSEHGIKRESMPPYTPQYNGVAERALGLLRDKTVA-------LLRGVMEGKSDHLWAEAMAYACEMSNRCTSSSLDSGTSPHELWYGHRPTFDGILPFGTVGYLRRSKPKHKLAPRGAKCIMLGLAADCPRNTYRV 810
D+ EFH + H + + R TA+ G +L G C CS ++ + + + T++RSD + GR+F+DL G S+GG + M+ DDFTR ++ FLKHKSDA A R + A +G+ + I+R+D GGE+ G +F S +E IK+E P Y+PQYNGVAER LGL+ + +A L V K+D LWAEAM +ACE N S+ SP+E+WYG P PF Y R +P KL P+G C +G + D PR+ +RV
Sbjct: 372 DVNEFHNIYAHSHKGLLRTTAKRLGTELVGEMHECTGCSMAKAVKKGIARETKSRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRAWMYFLKHKSDAGMAFRSFLASVRA-DGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGE-PRPARPYPFLKPAYCRWQRPS-KLLPKGESCFYVGPSRDHPRDCHRV 648
BLAST of mRNA_H-elongata_contig178989.4731.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE) HSP 1 Score: 191 bits (485), Expect = 1.110e-51 Identity = 112/280 (40.00%), Postives = 154/280 (55.00%), Query Frame = 1
Query: 1 DIMEFHQVLGHPGERITRDTARMAGVQLSGTWRPCVHCSESRVRRYAVPKSTENRSDTRAGRLFIDLTGPFHETSIGGNRFAMLCVDDFTRFKFVRFLKHKSDATDALRGVINDYLAPEGLK--IGIIRTDGGGEWCG-QFLSFMSEHGIKRESMPPYTPQYNGVAERALGLLRDKTVA-------LLRGVMEGKSDHLWAEAMAYACEMSNRCTSSSLDSGTSPHELWYGHRPTFDGILPFGTVGYLRRSKPKHKLAPRGAKCIMLGLAADCPRNTYRV 810
DI EFH + H E + R TA+ G +L G C CS S+ R + + T+ RSD + GR+F+DL G S+GG + M+ DDFTR ++ FL++KSDA A R + A G+ + I+R+D GGE+ G +F S +E IK+E P Y+PQYNGVAER LGL+ + +A L V K+D LWAEAM +ACE N S+ P+E+WYG P PF Y R +P KL P+G C +G + D PR+ +RV
Sbjct: 131 DINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVRETKRRSDKKLGRVFVDLGGRKDSASVGGKHYPMIVKDDFTRRTWMYFLRNKSDAGSAFRTFLASVRA-NGVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMPPYEMWYGE-PRPARPYPFLKPAYCRWQRPT-KLLPKGESCFYVGPSRDHPRDCHRV 407
BLAST of mRNA_H-elongata_contig178989.4731.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE) HSP 1 Score: 191 bits (484), Expect = 1.540e-51 Identity = 112/284 (39.44%), Postives = 156/284 (54.93%), Query Frame = 1
Query: 1 DIMEFHQVLGHPGERITRDTARMAGVQLSGTWRPCVHCSESRVRRYAVPKSTENRSDTRAGRLFIDLTGPFHETSIGGNRFAMLCVDDFTRFKFVRFLKHKSDATDALRGVINDYLAPEGLK--IGIIRTDGGGEWCG-QFLSFMSEHGIKRESMPPYTPQYNGVAERALGLLRDKTVA-------LLRGVMEGKSDHLWAEAMAYACEMSNRCTSSSLDSGTSPHELWYGH----RPTFDGILPFGTVGYLRRSKPKHKLAPRGAKCIMLGLAADCPRNTYRV 810
D+ EFH + H E + R TA+ G++L+G C CS S+ + + T+ RSD + GR+F+DL G S+GG + M+ DDFTR ++ FLK KSDA A R + A +G+ + I+R+D GGE+ G +F S +E IK+E P Y+PQYNGVAER LGL+ +A L V K+D LWAEAM +ACE N S+ SP+E+W+G RP PF Y R +P KL P+G C +G + D PR+ +RV
Sbjct: 571 DVNEFHNIYAHSHEGLLRTTAKRLGIELTGKMHACTGCSMSKAFKKGIAHETKCRSDKKLGRVFVDLGGRKDVASVGGKHYPMIVKDDFTRRTWMYFLKSKSDAASAFRSFLASVRA-DGIPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEAINHTACSANPDSKSPYEMWHGEASHARP-----YPFLKPAYCRWQRPS-KLLPKGEACFYVGPSRDHPRDCHRV 847
BLAST of mRNA_H-elongata_contig178989.4731.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE) HSP 1 Score: 191 bits (484), Expect = 2.820e-51 Identity = 113/280 (40.36%), Postives = 154/280 (55.00%), Query Frame = 1
Query: 1 DIMEFHQVLGHPGERITRDTARMAGVQLSGTWRPCVHCSESRVRRYAVPKSTENRSDTRAGRLFIDLTGPFHETSIGGNRFAMLCVDDFTRFKFVRFLKHKSDATDALRGVINDYLAPEGLK--IGIIRTDGGGEWCG-QFLSFMSEHGIKRESMPPYTPQYNGVAERALGLLRDKTVA-------LLRGVMEGKSDHLWAEAMAYACEMSNRCTSSSLDSGTSPHELWYGHRPTFDGILPFGTVGYLRRSKPKHKLAPRGAKCIMLGLAADCPRNTYRV 810
DI EFH + H E + R TA+ G +L G C CS S+ R + T+ RSD + GR+F+DL G S+GG + M+ DDFTR ++ FL++KSDA A R + A G+ + I+R+D GGE+ G +F S +E IK+E P Y+PQYNGVAER LGL+ + +A L V K+D LWAEAM +ACE N S+ SP+E+WYG P PF Y R +P KL P+G C +G + D PR+ +RV
Sbjct: 186 DINEFHNIYAHSHEGLLRTTAKRLGTKLVGDMHACSGCSMSKAIRKGIVGETKRRSDKKLGRVFVDLGGRKDIASVGGKHYPMIVKDDFTRRTWICFLRNKSDAGSAFRTFLASVRA-NGVPSFVEIVRSDNGGEFFGGEFTSVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFLKPAYCRWQRPT-KLLPKGESCFYVGPSRDHPRDCHRV 462
BLAST of mRNA_H-elongata_contig178989.4731.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE) HSP 1 Score: 187 bits (476), Expect = 3.360e-50 Identity = 110/281 (39.15%), Postives = 158/281 (56.23%), Query Frame = 1
Query: 1 DIMEFHQVLGHPGERITRDTARMAGVQLSGTWRPCVHCSESRVRRYAVPKSTENRSDTRAGRLFIDLTGPFHETSIGGNRFAMLCVDDFTRFKFVRFLKHKSDATDALRGVINDYLAPEGLK--IGIIRTDGGGEWCG-QFLSFMSEHGIKRESMPPYTPQYNGVAERALGLLRDKTVA-------LLRGVMEGKSDHLWAEAMAYACEMSNRCTSSSLDSGTSPHELWYGH-RPTFDGILPFGTVGYLRRSKPKHKLAPRGAKCIMLGLAADCPRNTYRV 810
D+ +FH + GH E + R TA+ G++L+G C CS + R A+ T N SD + GR+F++L G SIGG + M+ DDFTR ++ FL+ KSDA A R + + A +G+ I I+R+D GGE+ G +F S +E IK+E P ++P++NGVAER LGL+ + +A L V K+D LWAEAM +ACE N S+ SP+E+WYG RP PF Y + +P KL P+G C +G + D PR+ +RV
Sbjct: 392 DVNDFHNIYGHAHEGMLRTTAKRLGIELTGKMHACSGCSMGKAIRKAIAHVTTNSSDKKLGRVFVNLGGKKGVASIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFLANVRA-DGIPSLIEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAHSPEFNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEALNHTACSANPDSKSPYEMWYGEARPARP--YPFLKPAYCKWQRPS-KLLPKGESCFYVGPSRDHPRDCHRV 668
BLAST of mRNA_H-elongata_contig178989.4731.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE) HSP 1 Score: 169 bits (427), Expect = 4.460e-46 Identity = 110/272 (40.44%), Postives = 148/272 (54.41%), Query Frame = 1
Query: 1 DIMEFHQVLGHPGERITRDTARMAGVQLSG-TWRPCVHCSESRVRRYAVPKSTENRSDTRAGRLFIDLTGPFHETSIGGNRFAMLCVDDFTRFKFVRFLKHKSDATDALRGVINDYLAPE-GLKIGIIRTDGGGEWCGQFLSFMSEHGIKRESMPPYTPQYNGVAERALGLLRDKTVALLRGVMEGKSDH-----LWAEAMAYACEMSNRCTSSSLDSG-TSPHELWYGHRPTFDGILPFGTVGYLRRSKPKHKLAPRGAKCIMLGLAADCP 792
D+ H GH E + + TA+ GVQL+G PC+ CS S+ + + KST+ R+ + RLF++L G SIGGN + ++ DD TR+ V FLKHKSDA A + DY A ++ + RTDGGGE+ GQF GIK+E PP TP+YNGVAERALGLL D +A E D LWAEA++ AC N CT+++ + G SP EL++G P PF + +S+ K + PR K LGL P
Sbjct: 134 DLNSDHNSHGHTHEELLQKTAKQQGVQLTGGPLLPCLGCSMSKGQVKPISKSTDTRAANKLFRLFLNLGGRMQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFPDAPVSPGLWAEAISCACHQMN-CTATTGNPGHKSPEELFHGTPPPVGSTHPF-LKPLVFKSRRKARSQPRARKDGTLGLPTITP 403
BLAST of mRNA_H-elongata_contig178989.4731.1 vs. uniprot
Match: A0A6H5K1N9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N9_9PHAE) HSP 1 Score: 169 bits (429), Expect = 6.120e-44 Identity = 98/279 (35.13%), Postives = 149/279 (53.41%), Query Frame = 1
Query: 1 DIMEFHQVLGHPGERITRDTARMAGVQLSGTWRPCVHCSESRVRRYAVPKSTENRSDTRAGRLFIDLTGPFHETSIGGNRFAMLCVDDFTRFKFVRFLKHKSDATDALRGVINDYLAPEGLK-IGIIRTDGGGEWC-GQFLSFMSEHGIKRESMPPYTPQYNGVAERALGLLRDKTVA-------LLRGVMEGKSDHLWAEAMAYACEMSNRCTSSSLDSGTSPHELWYGHRPTFDGILPFGTVGYLRRSKPKHKLAPRGAKCIMLGLAADCPRNTYRV 810
DI +FH GH E + R TA+ G L G R C+ CS ++ +P T R+ + R F++L+G S+GG + ++ DD+TR+ V FLKHKSDA +A + + A + ++R+D GGE+ G+F ++ IK+E P ++P+YNGVAERALGL++D +A L G +S LWAEA+A++C N +++S SP+E+W+GH P PF + + K HK P KC LG + R+ R+
Sbjct: 307 DINDFHCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSEPIPNKTSTRAFKKLQRFFVELSGKARAQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLKEKRADGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAAIAARIQAPTLYPGAPNYRS--LWAEAIAWSCNALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPFLKPA-VYKVKRTHKSEPTAQKCFYLGPGINTNRDCVRI 582 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig178989.4731.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig178989.4731.1 >prot_H-elongata_contig178989.4731.1 ID=prot_H-elongata_contig178989.4731.1|Name=mRNA_H-elongata_contig178989.4731.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=282bp MEFHQVLGHPGERITRDTARMAGVQLSGTWRPCVHCSESRVRRYAVPKSTback to top mRNA from alignment at H-elongata_contig178989:310..1161+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig178989.4731.1 ID=mRNA_H-elongata_contig178989.4731.1|Name=mRNA_H-elongata_contig178989.4731.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=852bp|location=Sequence derived from alignment at H-elongata_contig178989:310..1161+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig178989:310..1161+ >mRNA_H-elongata_contig178989.4731.1 ID=mRNA_H-elongata_contig178989.4731.1|Name=mRNA_H-elongata_contig178989.4731.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1692bp|location=Sequence derived from alignment at H-elongata_contig178989:310..1161+ (Himanthalia elongata Himel1 dioecious)back to top |