mRNA_H-elongata_contig178470.4705.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig178470.4705.1
Unique NamemRNA_H-elongata_contig178470.4705.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig178470.4705.1 vs. uniprot
Match: D8LN21_ECTSI (Threonine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN21_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 8.860e-29
Identity = 55/81 (67.90%), Postives = 67/81 (82.72%), Query Frame = 1
Query:    1 TGKLTLEGELLERAQASFGSSRVNTADNLGTIQRFWEDHEYLLCPHSSIGVAAVAQLGMEEKKTVILATAHAAKFPDTVKQ 243
            TG+LTLEGELL++AQ++F SSRV T DNL TI++FW++  YLLCPHSS+G  A  QLGM E KTV+LATAH AKFPD VK+
Sbjct:  370 TGQLTLEGELLDQAQSAFSSSRVVTEDNLATIKQFWDEKSYLLCPHSSVGAKAPLQLGMPEGKTVVLATAHPAKFPDAVKK 450          
BLAST of mRNA_H-elongata_contig178470.4705.1 vs. uniprot
Match: A0A7S1Z2C3_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z2C3_TRICV)

HSP 1 Score: 93.6 bits (231), Expect = 1.630e-20
Identity = 44/81 (54.32%), Postives = 61/81 (75.31%), Query Frame = 1
Query:    1 TGKLTLEGELLERAQASFGSSRVNTADNLGTIQRFWEDHEYLLCPHSSIGVAAVAQLGMEEKKTVILATAHAAKFPDTVKQ 243
            TG+LT+ G  L+RA+  FGSSR +TA  L TI+R+ ++++Y+LCPHS++GVAA+ + GM    TV LATAH  KFPD VK+
Sbjct:  383 TGELTIAGRKLDRARKDFGSSRCDTAMTLETIKRYSDEYDYVLCPHSAVGVAAIHRAGMVNPGTVCLATAHEGKFPDAVKR 463          
BLAST of mRNA_H-elongata_contig178470.4705.1 vs. uniprot
Match: A0A7R9WME3_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WME3_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 5.380e-20
Identity = 41/81 (50.62%), Postives = 58/81 (71.60%), Query Frame = 1
Query:    1 TGKLTLEGELLERAQASFGSSRVNTADNLGTIQRFWEDHEYLLCPHSSIGVAAVAQLGMEEKKTVILATAHAAKFPDTVKQ 243
            T KL ++G+LLE+A++ F S+R +TA  L  I+ + E H Y+LCPHS++GV+A+ QL + +   V LATAH AKFP  VKQ
Sbjct:   16 TKKLDIKGDLLEKARSDFSSARADTAMTLAAIKEYNEKHNYVLCPHSAVGVSAIQQLDLVKPTAVCLATAHDAKFPAAVKQ 96          
BLAST of mRNA_H-elongata_contig178470.4705.1 vs. uniprot
Match: A0A7S3DNA6_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DNA6_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.410e-19
Identity = 44/81 (54.32%), Postives = 58/81 (71.60%), Query Frame = 1
Query:    1 TGKLTLEGELLERAQASFGSSRVNTADNLGTIQRFWEDHEYLLCPHSSIGVAAVAQLGMEEKKTVILATAHAAKFPDTVKQ 243
            T KLT++GELL +AQ  FGS+R +TA  L TI+ + E H Y+LCPHS++GV+AV QL +    TV LATAH  KFP  V++
Sbjct:  378 TKKLTIDGELLAKAQGDFGSARADTAMTLDTIREYNEKHNYVLCPHSAVGVSAVHQLSLASLDTVCLATAHEGKFPAAVQR 458          
BLAST of mRNA_H-elongata_contig178470.4705.1 vs. uniprot
Match: A0A8J9X3H5_PHATR (Hypothetical protein n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9X3H5_PHATR)

HSP 1 Score: 90.1 bits (222), Expect = 1.780e-19
Identity = 42/81 (51.85%), Postives = 58/81 (71.60%), Query Frame = 1
Query:    1 TGKLTLEGELLERAQASFGSSRVNTADNLGTIQRFWEDHEYLLCPHSSIGVAAVAQLGMEEKKTVILATAHAAKFPDTVKQ 243
            TG+LT++G+LL +AQA F S R +T+  L TI+ + + H+Y+LCPHS++GV A+ QL +    TV LATAH AKFP  V Q
Sbjct:  245 TGQLTIQGDLLRQAQADFDSCRGDTSQTLATIETYHQKHQYVLCPHSAVGVYAIHQLSLVSSATVCLATAHEAKFPAAVAQ 325          
BLAST of mRNA_H-elongata_contig178470.4705.1 vs. uniprot
Match: B7G9C6_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G9C6_PHATC)

HSP 1 Score: 90.1 bits (222), Expect = 2.680e-19
Identity = 42/81 (51.85%), Postives = 58/81 (71.60%), Query Frame = 1
Query:    1 TGKLTLEGELLERAQASFGSSRVNTADNLGTIQRFWEDHEYLLCPHSSIGVAAVAQLGMEEKKTVILATAHAAKFPDTVKQ 243
            TG+LT++G+LL +AQA F S R +T+  L TI+ + + H+Y+LCPHS++GV A+ QL +    TV LATAH AKFP  V Q
Sbjct:  349 TGQLTIQGDLLRQAQADFDSCRGDTSQTLATIETYHQKHQYVLCPHSAVGVYAIHQLSLVSSATVCLATAHEAKFPAAVAQ 429          
BLAST of mRNA_H-elongata_contig178470.4705.1 vs. uniprot
Match: A0A7S2UCD3_9STRA (Hypothetical protein n=2 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UCD3_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 5.060e-19
Identity = 42/80 (52.50%), Postives = 58/80 (72.50%), Query Frame = 1
Query:    1 TGKLTLEGELLERAQASFGSSRVNTADNLGTIQRFWEDHEYLLCPHSSIGVAAVAQLGMEEKKTVILATAHAAKFPDTVK 240
            TGKLT++G  L++AQ  F S+R +TA  L  IQ +++ + Y+LCPHS++GV+A+ QL M    T+ LATAH AKFPD VK
Sbjct:  350 TGKLTIDGGELKQAQEHFLSARADTATTLAVIQEYFQKYNYVLCPHSAVGVSAIQQLKMVSPTTICLATAHEAKFPDAVK 429          
BLAST of mRNA_H-elongata_contig178470.4705.1 vs. uniprot
Match: A0A835Z4E7_9STRA (Threonine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4E7_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 7.260e-19
Identity = 43/79 (54.43%), Postives = 54/79 (68.35%), Query Frame = 1
Query:    1 TGKLTLEGELLERAQASFGSSRVNTADNLGTIQRFWEDHEYLLCPHSSIGVAAVAQLGMEEKKTVILATAHAAKFPDTV 237
            TGKLT+EG+LL +AQA F S+ V   +NL  I+  WE ++YL CPHSSIG AA     +   +TV+LATAH AKFP  V
Sbjct:  352 TGKLTIEGDLLAKAQAEFVSASVAAEENLANIKHQWEKNQYLFCPHSSIGAAAPPHCDLPVTETVVLATAHPAKFPSAV 430          
BLAST of mRNA_H-elongata_contig178470.4705.1 vs. uniprot
Match: A0A7S4SNE2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4SNE2_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 3.420e-18
Identity = 42/77 (54.55%), Postives = 56/77 (72.73%), Query Frame = 1
Query:    1 TGKLTLEGELLERAQASFGSSRVNTADNLGTIQRFWEDHEYLLCPHSSIGVAAVAQLGMEEKKTVILATAHAAKFPD 231
            TG+LT+ G+ LE AQA F S+R +T+  L TI+ + E H+Y+LCPHS++GV+A+ QL      TV LATAH AKFPD
Sbjct:  358 TGQLTITGKKLEIAQADFLSARADTSMTLSTIKEYHEKHDYMLCPHSAVGVSAIQQLKEINHSTVCLATAHEAKFPD 434          
BLAST of mRNA_H-elongata_contig178470.4705.1 vs. uniprot
Match: B8CBR8_THAPS (Threonine synthase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CBR8_THAPS)

HSP 1 Score: 86.3 bits (212), Expect = 6.280e-18
Identity = 41/79 (51.90%), Postives = 58/79 (73.42%), Query Frame = 1
Query:    1 TGKLTLEGELLERAQASFGSSRVNTADNLGTIQRFWEDHEYLLCPHSSIGVAAVAQLGMEEKKTVILATAHAAKFPDTV 237
            TGKLT+ G+ L++A+A F S+R +TA+ L TI+R+  + +Y+LCPHS++GV+A+ QL      TV LATAH AKF D V
Sbjct:  351 TGKLTITGKKLDQARADFKSARADTANTLETIKRYHSEFDYVLCPHSAVGVSAIHQLDTANSATVALATAHFAKFGDAV 429          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig178470.4705.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN21_ECTSI8.860e-2967.90Threonine synthase n=1 Tax=Ectocarpus siliculosus ... [more]
A0A7S1Z2C3_TRICV1.630e-2054.32Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7R9WME3_9STRA5.380e-2050.62Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S3DNA6_9STRA1.410e-1954.32Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A8J9X3H5_PHATR1.780e-1951.85Hypothetical protein n=1 Tax=Phaeodactylum tricorn... [more]
B7G9C6_PHATC2.680e-1951.85Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S2UCD3_9STRA5.060e-1952.50Hypothetical protein n=2 Tax=Attheya septentrional... [more]
A0A835Z4E7_9STRA7.260e-1954.43Threonine synthase n=1 Tax=Tribonema minus TaxID=3... [more]
A0A7S4SNE2_9STRA3.420e-1854.55Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
B8CBR8_THAPS6.280e-1851.90Threonine synthase n=1 Tax=Thalassiosira pseudonan... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig178470contigH-elongata_contig178470:643..885 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.9
Seed ortholog evalue8.6e-24
Seed eggNOG ortholog2880.D8LN21
Preferred nameTHR4
KEGG rclassRC00017,RC00526
KEGG koko:K01733
KEGG ReactionR01466,R05086
KEGG Pathwayko00260,ko00750,ko01100,ko01110,ko01120,ko01230,map00260,map00750,map01100,map01110,map01120,map01230
KEGG ModuleM00018
GOsGO:0003674,GO:0003824,GO:0004795,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006082,GO:0006520,GO:0006566,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009088,GO:0009987,GO:0016053,GO:0016311,GO:0016829,GO:0016835,GO:0016838,GO:0019752,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
EggNOG free text desc.2-oxobutyrate metabolic process
EggNOG OGsCOG0498@1,KOG2616@2759
EC4.2.3.1
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionThreonine synthase
Ec32 orthologEc-13_002160.1
Exons1
Model size243
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930030.3824122-CDS-H-elongata_contig178470:642..8851622930030.3824122-CDS-H-elongata_contig178470:642..885Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig178470 643..885 +
1691679253.4183602-CDS-H-elongata_contig178470:642..8851691679253.4183602-CDS-H-elongata_contig178470:642..885Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig178470 643..885 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig178470.4705.1prot_H-elongata_contig178470.4705.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig178470 643..885 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig178470.4705.1

>prot_H-elongata_contig178470.4705.1 ID=prot_H-elongata_contig178470.4705.1|Name=mRNA_H-elongata_contig178470.4705.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
TGKLTLEGELLERAQASFGSSRVNTADNLGTIQRFWEDHEYLLCPHSSIG
VAAVAQLGMEEKKTVILATAHAAKFPDTVKQ
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mRNA from alignment at H-elongata_contig178470:643..885+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig178470.4705.1 ID=mRNA_H-elongata_contig178470.4705.1|Name=mRNA_H-elongata_contig178470.4705.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=243bp|location=Sequence derived from alignment at H-elongata_contig178470:643..885+ (Himanthalia elongata Himel1 dioecious)
ACAGGAAAGCTGACCCTTGAAGGGGAGCTGCTGGAGCGAGCGCAGGCATC ATTTGGTTCCTCGCGAGTGAACACGGCCGATAACTTGGGGACGATCCAGC GATTCTGGGAGGACCACGAGTATCTCCTGTGCCCCCACTCATCGATAGGG GTTGCGGCCGTCGCTCAGCTTGGGATGGAAGAGAAGAAGACCGTGATTCT CGCGACAGCACACGCGGCGAAGTTTCCGGACACCGTAAAACAG
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Coding sequence (CDS) from alignment at H-elongata_contig178470:643..885+

>mRNA_H-elongata_contig178470.4705.1 ID=mRNA_H-elongata_contig178470.4705.1|Name=mRNA_H-elongata_contig178470.4705.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig178470:643..885+ (Himanthalia elongata Himel1 dioecious)
ACAGGAAAGCTGACCCTTGAAGGGGAGCTGCTGGAGCGAGCGCAGGCATC
ATTTGGTTCCTCGCGAGTGAACACGGCCGATAACTTGGGGACGATCCAGC
GATTCTGGGAGGACCACGAGTATCTCCTGTGCCCCCACTCATCGATAGGG
GTTGCGGCCGTCGCTCAGCTTGGGATGGAAGAGAAGAAGACCGTGATTCT
CGCGACAGCACACGCGGCGAAGTTTCCGGACACCGTAAAACAGACAGGAA
AGCTGACCCTTGAAGGGGAGCTGCTGGAGCGAGCGCAGGCATCATTTGGT
TCCTCGCGAGTGAACACGGCCGATAACTTGGGGACGATCCAGCGATTCTG
GGAGGACCACGAGTATCTCCTGTGCCCCCACTCATCGATAGGGGTTGCGG
CCGTCGCTCAGCTTGGGATGGAAGAGAAGAAGACCGTGATTCTCGCGACA
GCACACGCGGCGAAGTTTCCGGACACCGTAAAACAG
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