mRNA_H-elongata_contig178470.4705.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig178470.4705.1 vs. uniprot
Match: D8LN21_ECTSI (Threonine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN21_ECTSI) HSP 1 Score: 116 bits (290), Expect = 8.860e-29 Identity = 55/81 (67.90%), Postives = 67/81 (82.72%), Query Frame = 1
Query: 1 TGKLTLEGELLERAQASFGSSRVNTADNLGTIQRFWEDHEYLLCPHSSIGVAAVAQLGMEEKKTVILATAHAAKFPDTVKQ 243
TG+LTLEGELL++AQ++F SSRV T DNL TI++FW++ YLLCPHSS+G A QLGM E KTV+LATAH AKFPD VK+
Sbjct: 370 TGQLTLEGELLDQAQSAFSSSRVVTEDNLATIKQFWDEKSYLLCPHSSVGAKAPLQLGMPEGKTVVLATAHPAKFPDAVKK 450
BLAST of mRNA_H-elongata_contig178470.4705.1 vs. uniprot
Match: A0A7S1Z2C3_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z2C3_TRICV) HSP 1 Score: 93.6 bits (231), Expect = 1.630e-20 Identity = 44/81 (54.32%), Postives = 61/81 (75.31%), Query Frame = 1
Query: 1 TGKLTLEGELLERAQASFGSSRVNTADNLGTIQRFWEDHEYLLCPHSSIGVAAVAQLGMEEKKTVILATAHAAKFPDTVKQ 243
TG+LT+ G L+RA+ FGSSR +TA L TI+R+ ++++Y+LCPHS++GVAA+ + GM TV LATAH KFPD VK+
Sbjct: 383 TGELTIAGRKLDRARKDFGSSRCDTAMTLETIKRYSDEYDYVLCPHSAVGVAAIHRAGMVNPGTVCLATAHEGKFPDAVKR 463
BLAST of mRNA_H-elongata_contig178470.4705.1 vs. uniprot
Match: A0A7R9WME3_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WME3_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 5.380e-20 Identity = 41/81 (50.62%), Postives = 58/81 (71.60%), Query Frame = 1
Query: 1 TGKLTLEGELLERAQASFGSSRVNTADNLGTIQRFWEDHEYLLCPHSSIGVAAVAQLGMEEKKTVILATAHAAKFPDTVKQ 243
T KL ++G+LLE+A++ F S+R +TA L I+ + E H Y+LCPHS++GV+A+ QL + + V LATAH AKFP VKQ
Sbjct: 16 TKKLDIKGDLLEKARSDFSSARADTAMTLAAIKEYNEKHNYVLCPHSAVGVSAIQQLDLVKPTAVCLATAHDAKFPAAVKQ 96
BLAST of mRNA_H-elongata_contig178470.4705.1 vs. uniprot
Match: A0A7S3DNA6_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DNA6_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 1.410e-19 Identity = 44/81 (54.32%), Postives = 58/81 (71.60%), Query Frame = 1
Query: 1 TGKLTLEGELLERAQASFGSSRVNTADNLGTIQRFWEDHEYLLCPHSSIGVAAVAQLGMEEKKTVILATAHAAKFPDTVKQ 243
T KLT++GELL +AQ FGS+R +TA L TI+ + E H Y+LCPHS++GV+AV QL + TV LATAH KFP V++
Sbjct: 378 TKKLTIDGELLAKAQGDFGSARADTAMTLDTIREYNEKHNYVLCPHSAVGVSAVHQLSLASLDTVCLATAHEGKFPAAVQR 458
BLAST of mRNA_H-elongata_contig178470.4705.1 vs. uniprot
Match: A0A8J9X3H5_PHATR (Hypothetical protein n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9X3H5_PHATR) HSP 1 Score: 90.1 bits (222), Expect = 1.780e-19 Identity = 42/81 (51.85%), Postives = 58/81 (71.60%), Query Frame = 1
Query: 1 TGKLTLEGELLERAQASFGSSRVNTADNLGTIQRFWEDHEYLLCPHSSIGVAAVAQLGMEEKKTVILATAHAAKFPDTVKQ 243
TG+LT++G+LL +AQA F S R +T+ L TI+ + + H+Y+LCPHS++GV A+ QL + TV LATAH AKFP V Q
Sbjct: 245 TGQLTIQGDLLRQAQADFDSCRGDTSQTLATIETYHQKHQYVLCPHSAVGVYAIHQLSLVSSATVCLATAHEAKFPAAVAQ 325
BLAST of mRNA_H-elongata_contig178470.4705.1 vs. uniprot
Match: B7G9C6_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G9C6_PHATC) HSP 1 Score: 90.1 bits (222), Expect = 2.680e-19 Identity = 42/81 (51.85%), Postives = 58/81 (71.60%), Query Frame = 1
Query: 1 TGKLTLEGELLERAQASFGSSRVNTADNLGTIQRFWEDHEYLLCPHSSIGVAAVAQLGMEEKKTVILATAHAAKFPDTVKQ 243
TG+LT++G+LL +AQA F S R +T+ L TI+ + + H+Y+LCPHS++GV A+ QL + TV LATAH AKFP V Q
Sbjct: 349 TGQLTIQGDLLRQAQADFDSCRGDTSQTLATIETYHQKHQYVLCPHSAVGVYAIHQLSLVSSATVCLATAHEAKFPAAVAQ 429
BLAST of mRNA_H-elongata_contig178470.4705.1 vs. uniprot
Match: A0A7S2UCD3_9STRA (Hypothetical protein n=2 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UCD3_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 5.060e-19 Identity = 42/80 (52.50%), Postives = 58/80 (72.50%), Query Frame = 1
Query: 1 TGKLTLEGELLERAQASFGSSRVNTADNLGTIQRFWEDHEYLLCPHSSIGVAAVAQLGMEEKKTVILATAHAAKFPDTVK 240
TGKLT++G L++AQ F S+R +TA L IQ +++ + Y+LCPHS++GV+A+ QL M T+ LATAH AKFPD VK
Sbjct: 350 TGKLTIDGGELKQAQEHFLSARADTATTLAVIQEYFQKYNYVLCPHSAVGVSAIQQLKMVSPTTICLATAHEAKFPDAVK 429
BLAST of mRNA_H-elongata_contig178470.4705.1 vs. uniprot
Match: A0A835Z4E7_9STRA (Threonine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4E7_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 7.260e-19 Identity = 43/79 (54.43%), Postives = 54/79 (68.35%), Query Frame = 1
Query: 1 TGKLTLEGELLERAQASFGSSRVNTADNLGTIQRFWEDHEYLLCPHSSIGVAAVAQLGMEEKKTVILATAHAAKFPDTV 237
TGKLT+EG+LL +AQA F S+ V +NL I+ WE ++YL CPHSSIG AA + +TV+LATAH AKFP V
Sbjct: 352 TGKLTIEGDLLAKAQAEFVSASVAAEENLANIKHQWEKNQYLFCPHSSIGAAAPPHCDLPVTETVVLATAHPAKFPSAV 430
BLAST of mRNA_H-elongata_contig178470.4705.1 vs. uniprot
Match: A0A7S4SNE2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4SNE2_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 3.420e-18 Identity = 42/77 (54.55%), Postives = 56/77 (72.73%), Query Frame = 1
Query: 1 TGKLTLEGELLERAQASFGSSRVNTADNLGTIQRFWEDHEYLLCPHSSIGVAAVAQLGMEEKKTVILATAHAAKFPD 231
TG+LT+ G+ LE AQA F S+R +T+ L TI+ + E H+Y+LCPHS++GV+A+ QL TV LATAH AKFPD
Sbjct: 358 TGQLTITGKKLEIAQADFLSARADTSMTLSTIKEYHEKHDYMLCPHSAVGVSAIQQLKEINHSTVCLATAHEAKFPD 434
BLAST of mRNA_H-elongata_contig178470.4705.1 vs. uniprot
Match: B8CBR8_THAPS (Threonine synthase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CBR8_THAPS) HSP 1 Score: 86.3 bits (212), Expect = 6.280e-18 Identity = 41/79 (51.90%), Postives = 58/79 (73.42%), Query Frame = 1
Query: 1 TGKLTLEGELLERAQASFGSSRVNTADNLGTIQRFWEDHEYLLCPHSSIGVAAVAQLGMEEKKTVILATAHAAKFPDTV 237
TGKLT+ G+ L++A+A F S+R +TA+ L TI+R+ + +Y+LCPHS++GV+A+ QL TV LATAH AKF D V
Sbjct: 351 TGKLTITGKKLDQARADFKSARADTANTLETIKRYHSEFDYVLCPHSAVGVSAIHQLDTANSATVALATAHFAKFGDAV 429 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig178470.4705.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig178470.4705.1 >prot_H-elongata_contig178470.4705.1 ID=prot_H-elongata_contig178470.4705.1|Name=mRNA_H-elongata_contig178470.4705.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp TGKLTLEGELLERAQASFGSSRVNTADNLGTIQRFWEDHEYLLCPHSSIGback to top mRNA from alignment at H-elongata_contig178470:643..885+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig178470.4705.1 ID=mRNA_H-elongata_contig178470.4705.1|Name=mRNA_H-elongata_contig178470.4705.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=243bp|location=Sequence derived from alignment at H-elongata_contig178470:643..885+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig178470:643..885+ >mRNA_H-elongata_contig178470.4705.1 ID=mRNA_H-elongata_contig178470.4705.1|Name=mRNA_H-elongata_contig178470.4705.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig178470:643..885+ (Himanthalia elongata Himel1 dioecious)back to top |