prot_H-elongata_contig178059.4692.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig178059.4692.1
Unique Nameprot_H-elongata_contig178059.4692.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length160
Homology
BLAST of mRNA_H-elongata_contig178059.4692.1 vs. uniprot
Match: A0A6H5KMG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMG0_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 1.110e-41
Identity = 83/176 (47.16%), Postives = 116/176 (65.91%), Query Frame = 0
Query:    1 YVDDILFFSASKTFLNKLKKKLMDRFEMSNMGDVSKLLGINVTRDREKGTITISQKDYTENVVQRYGMKSFNPAYTPGVGPELSLN-QPEEKLLNEEEKRRYQVITR---------------AQGGFRLAAFSNANWGNNPDNSRSTSSYIVMLANAPISFKVGLKGLTEQFRMEA 160
            YVDD+L        ++ +K KL  RF+M+++G+ S +LG+ + RDRE  T+TISQ+ Y +++++R+GM    P  TPG G E+S N QPE+ LL+E+E R+YQ I                 A GGF+LA FS++NW NNPDN +STSSY+ MLANAP+SF+ GL+GLT    MEA
Sbjct:  504 YVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNNIQPEDTLLDEKETRKYQGIMGSLMYIALVLRYDIMCATGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEA 679          
BLAST of mRNA_H-elongata_contig178059.4692.1 vs. uniprot
Match: A0A6H5J6N1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6N1_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 7.140e-40
Identity = 80/185 (43.24%), Postives = 114/185 (61.62%), Query Frame = 0
Query:    1 YVDDILFFSASKTFLNKLKKKLMDRFEMSNMGDVSKLLGINVTRDREKGTITISQKDYTENVVQRYGMKSFNPAYTPGVGPELSLNQPEEKLLNEEEKRRYQV-------------------------ITRAQGGFRLAAFSNANWGNNPDNSRSTSSYIVMLANAPISFKVGLKGLTEQFRMEA 160
            YVDD++    +   +  +K KLM++F+MS +G+VS +LG+ VTRD E GT+TI+Q DYT +++ R+GM+   P   P VG ELS  QP E +LN+E+ +                             IT  +GGF+L AFS+ANW +NPDN+RSTSSY++M++ AP+SFK GL+ LT    MEA
Sbjct:  241 YVDDLVVIGGNIEVIEAIKTKLMEQFQMSVLGNVSLVLGMQVTRDGEHGTLTITQADYTRSILARFGMEECKPTSIPSVGSELSTEQPTETVLNKEKTQSQLARVMSKAAKAHMGAAKHLLRGTQDFCITYKRGGFKLTAFSDANWESNPDNARSTSSYMIMMSKAPVSFKTGLQDLTVMSTMEA 425          
BLAST of mRNA_H-elongata_contig178059.4692.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 1.280e-38
Identity = 82/212 (38.68%), Postives = 116/212 (54.72%), Query Frame = 0
Query:    1 YVDDILFFSASKTFLNKLKKKLMDRFEMSNMGDVSKLLGINVTRDREKGTITISQKDYTENVVQRYGMKSFNPAYTPGVGPELSLNQPEEKLLNEEEKRRYQ----------------------------------------------------VITRAQGGFRLAAFSNANWGNNPDNSRSTSSYIVMLANAPISFKVGLKGLTEQFRMEA 160
            YVDD+L        ++ +K KL  RF+M+++G+ S +LG+ + RDRE  T+TISQ+ Y +++++R+GM    P  TPG G E+S  QPE+ LL+E+E R+YQ                                                     IT  +GGF+LA FS++NW NNPDN +STSSY+ MLANAP+SF+ GL+GLT    MEA
Sbjct:  118 YVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEA 329          
BLAST of mRNA_H-elongata_contig178059.4692.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 2.910e-36
Identity = 81/212 (38.21%), Postives = 115/212 (54.25%), Query Frame = 0
Query:    1 YVDDILFFSASKTFLNKLKKKLMDRFEMSNMGDVSKLLGINVTRDREKGTITISQKDYTENVVQRYGMKSFNPAYTPGVGPELSLNQPEEKLLNEEEKRRYQ----------------------------------------------------VITRAQGGFRLAAFSNANWGNNPDNSRSTSSYIVMLANAPISFKVGLKGLTEQFRMEA 160
            YVDD+L        ++ +K KL  RF+M+++G+ S +L + + RDRE  T+TISQ+ Y +++++R+GM    P  TPG G E+S  QPE+ LL+E+E R+YQ                                                     IT  +GGF+LA FS++NW NNPDN +STSSY+ MLANAP+SF+ GL+GLT    MEA
Sbjct:  678 YVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLRMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEA 889          
BLAST of mRNA_H-elongata_contig178059.4692.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 3.030e-36
Identity = 80/212 (37.74%), Postives = 116/212 (54.72%), Query Frame = 0
Query:    1 YVDDILFFSASKTFLNKLKKKLMDRFEMSNMGDVSKLLGINVTRDREKGTITISQKDYTENVVQRYGMKSFNPAYTPGVGPELSLNQPEEKLLNEEEKRRYQ----------------------------------------------------VITRAQGGFRLAAFSNANWGNNPDNSRSTSSYIVMLANAPISFKVGLKGLTEQFRMEA 160
            YVDD+L        ++ +K KL  RF+M+++G+ S +LG+ + RDRE  T+TISQ+ Y +++++R+G+    P  TPG G E+S  QPE+ LL+E+E R+YQ                                                     IT  +GGF+LA FS++NW NNPDN +STSSY+ +LANAP+SF+ GL+GLT    MEA
Sbjct: 1347 YVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTVLANAPMSFRSGLQGLTAMSTMEA 1558          
BLAST of mRNA_H-elongata_contig178059.4692.1 vs. uniprot
Match: A0A6H5K129_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K129_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 7.790e-34
Identity = 69/146 (47.26%), Postives = 98/146 (67.12%), Query Frame = 0
Query:   26 FEMSNMGDVSKLLGINVTRDREKGTITISQKDYTENVVQRYGMKSFNPAYTPGVGPELSLNQPEEKLLNEEEKRRYQ-----------VITRAQGGFRLAAFSNANWGNNPDNSRSTSSYIVMLANAPISFKVGLKGLTEQFRMEA 160
            F+M+NMG+V  +LG+++ +D  +GT+TISQ+ Y++++++R+GM    P  TPG G ELS  QPE+ LL+EEE RRYQ           V+     G +LA FS +NW NNPDN +S+S Y+ ML NAP+SFK G++G T    MEA
Sbjct:  914 FKMTNMGEVKLVLGMDIKKDCNRGTLTISQEAYSKSILERFGMSECKPISTPGYGSELSNKQPEDTLLDEEETRRYQGIVGCLMYIAQVLRYDVIGSKLATFSESNWANNPDNGKSSSCYLTMLGNAPVSFKSGIQGPTAMSTMEA 1059          
BLAST of mRNA_H-elongata_contig178059.4692.1 vs. uniprot
Match: A0A6H5KPN4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPN4_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 2.630e-31
Identity = 72/187 (38.50%), Postives = 96/187 (51.34%), Query Frame = 0
Query:   26 FEMSNMGDVSKLLGINVTRDREKGTITISQKDYTENVVQRYGMKSFNPAYTPGVGPELSLNQPEEKLLNEEEKRRYQVI----------------------------------------------------TRAQGGFRLAAFSNANWGNNPDNSRSTSSYIVMLANAPISFKVGLKGLTEQFRMEA 160
            F+M++MG+V  +LG+ + RD  +GT+TISQK YT+++++R+GM    P  TPG G ELS  QPE+ LL EEE RRYQ I                                                    T    GF+LA FS++NW NNPDN +STS Y+ ML N P+S K G++G T    MEA
Sbjct:  234 FKMTDMGEVKLVLGMEIKRDHNQGTLTISQKAYTKSILERFGMSECKPTSTPGYGSELSNKQPEDTLLGEEETRRYQGIVGCLMYIAQVLRYDIMYATGQLARPMEKPSKIHMVAAKHTLRYVAGTTNFRITYKSEGFKLATFSDSNWANNPDNGKSTSCYLTMLGNTPVSLKSGIQGPTAMSTMEA 420          
BLAST of mRNA_H-elongata_contig178059.4692.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 1.360e-30
Identity = 70/190 (36.84%), Postives = 103/190 (54.21%), Query Frame = 0
Query:    1 YVDDILFFSASKTFLNKLKKKLMDRFEMSNMGDVSKLLGINVTRDREKGTITISQKDYTENVVQRYGMKSFNPAYTPGVGPELSLNQPEEKLLNEEEKRRYQ----------------------------------------------VITRAQGGFRLAAFSNANWGNNPDNSRSTSSYIVMLANAPIS 144
            YVDD+L        ++ +K KL  RF+M+++G+ S +LG+ + RDRE  T+TISQ+ Y +++++R+GM    P  TPG G E+S  QP+  LL+E+E R+YQ                                               IT  +GGF+LA FS++NW NNPDN +ST+SY+ ML NAP+S
Sbjct: 1512 YVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPDYTLLDEKETRKYQGIVGSPMYIAHXDQYTWLARPMAKPSKVHMVAAKHTLRFLVGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTASYLTMLVNAPMS 1701          
BLAST of mRNA_H-elongata_contig178059.4692.1 vs. uniprot
Match: A0A6H5KCG4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG4_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 9.980e-29
Identity = 54/105 (51.43%), Postives = 76/105 (72.38%), Query Frame = 0
Query:    1 YVDDILFFSASKTFLNKLKKKLMDRFEMSNMGDVSKLLGINVTRDREKGTITISQKDYTENVVQRYGMKSFNPAYTPGVGPELSLNQPEEKLLNEEEKRRYQVIT 105
            YVDDIL    +K  +++ KK+LMD FEM++MG+V +++GI V RD E GT+ ISQ  Y  +++QRYGM+  NP  TPG G ELS  QP+++LL  E+K+R+Q IT
Sbjct:  105 YVDDILITEGNKEIVSRKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDKQRFQAIT 209          
BLAST of mRNA_H-elongata_contig178059.4692.1 vs. uniprot
Match: A0A6H5JG39_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG39_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 7.200e-27
Identity = 66/177 (37.29%), Postives = 95/177 (53.67%), Query Frame = 0
Query:   35 SKLLGINVTRDREKGTITISQKDYTENVVQRYGMKSFNPAYTPGVGPELSLNQPEEKLLNEEEKRRYQVITRA----------------------------------------------------QGGFRLAAFSNANWGNNPDNSRSTSSYIVMLANAPISFKVGLKGLTEQFRME 159
            S + G+ + RDRE+GT++IS++ Y+++++ R+GM +  P  TPG+GP  S  QPEE LLN+EE RRYQ I                                                       +GGF+L AF+++NWGNNPDN +STSS++ ML +AP++FK GL+ LT Q  ME
Sbjct:  435 SLISGMEIKRDRERGTLSISREAYSKSILDRFGMSACKPTSTPGLGPGPSNVQPEETLLNQEETRRYQGIVGCLIYLSQILRYDIMYATSQLARPMAKPSKNHMGAAKRTFRYLAGTTYFKIPYKRGGFKLTAFTDSNWGNNPDNGKSTSSHLTMLCDAPMAFKSGLQSLTTQSTME 611          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig178059.4692.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KMG0_9PHAE1.110e-4147.16Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5J6N1_9PHAE7.140e-4043.24Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L5U2_9PHAE1.280e-3838.68Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KNH5_9PHAE2.910e-3638.21Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KJH6_9PHAE3.030e-3637.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K129_9PHAE7.790e-3447.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPN4_9PHAE2.630e-3138.50Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5J842_9PHAE1.360e-3036.84Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KCG4_9PHAE9.980e-2951.43Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JG39_9PHAE7.200e-2737.29Integrase catalytic domain-containing protein n=1 ... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 1..77
e-value: 3.5E-16
score: 59.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig178059contigH-elongata_contig178059:3..579 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig178059.4692.1mRNA_H-elongata_contig178059.4692.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig178059 3..579 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig178059.4692.1 ID=prot_H-elongata_contig178059.4692.1|Name=mRNA_H-elongata_contig178059.4692.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=160bp
YVDDILFFSASKTFLNKLKKKLMDRFEMSNMGDVSKLLGINVTRDREKGT
ITISQKDYTENVVQRYGMKSFNPAYTPGVGPELSLNQPEEKLLNEEEKRR
YQVITRAQGGFRLAAFSNANWGNNPDNSRSTSSYIVMLANAPISFKVGLK
GLTEQFRMEA
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2