mRNA_H-elongata_contig177904.4685.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig177904.4685.1
Unique NamemRNA_H-elongata_contig177904.4685.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig177904.4685.1 vs. uniprot
Match: A0A126WYE1_SCYLO (Putative LOV domain-containing protein n=2 Tax=Scytosiphon TaxID=27966 RepID=A0A126WYE1_SCYLO)

HSP 1 Score: 295 bits (754), Expect = 4.690e-93
Identity = 144/151 (95.36%), Postives = 147/151 (97.35%), Query Frame = 1
Query:    1 PSDADEWLNMFVSTAEYFPACIVISDMTIPGAPMVYINGEFTKTTGYTKEEAVGRNCRFLQGPETEPESIAVIRNTLSKGQDCHVKLTNYRKNGEKFQNLLSMKPVFDADDIYRYVIGVQFEITQDVGLKKRLVQLDKLLRLLPSRLNLKS 453
            P DADEWLNMFVSTAE+FPACIVISDMTIPGAPMVYINGEFTKTTGYTKEEAVGRNCRFLQGPETEPESIAVIRNTLSKGQDCHVKLTNYRKNGEKFQNLLSMKPVFD D+IYRYVIGVQFEI +D GLKKRLVQLDKLLRLLPSRLNLKS
Sbjct:  206 PGDADEWLNMFVSTAEFFPACIVISDMTIPGAPMVYINGEFTKTTGYTKEEAVGRNCRFLQGPETEPESIAVIRNTLSKGQDCHVKLTNYRKNGEKFQNLLSMKPVFDGDNIYRYVIGVQFEILEDKGLKKRLVQLDKLLRLLPSRLNLKS 356          
BLAST of mRNA_H-elongata_contig177904.4685.1 vs. uniprot
Match: D7FQX8_ECTSI (Helmchrome putative blue light receptor for phototaxis n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQX8_ECTSI)

HSP 1 Score: 299 bits (766), Expect = 1.960e-91
Identity = 147/151 (97.35%), Postives = 148/151 (98.01%), Query Frame = 1
Query:    1 PSDADEWLNMFVSTAEYFPACIVISDMTIPGAPMVYINGEFTKTTGYTKEEAVGRNCRFLQGPETEPESIAVIRNTLSKGQDCHVKLTNYRKNGEKFQNLLSMKPVFDADDIYRYVIGVQFEITQDVGLKKRLVQLDKLLRLLPSRLNLKS 453
            P DADEWLNMFVSTAE+FPACIVISDMTIPGAPMVYINGEFTKTTGYTKEEAVGRNCRFLQGPETEPESIAVIRNTLSKGQDCHVKLTNYRKNGEKFQNLLSMKPVFDADDIYRYVIGVQFEI QD GLKKRLVQLDKLLRLLPSRLNLKS
Sbjct:  159 PGDADEWLNMFVSTAEFFPACIVISDMTIPGAPMVYINGEFTKTTGYTKEEAVGRNCRFLQGPETEPESIAVIRNTLSKGQDCHVKLTNYRKNGEKFQNLLSMKPVFDADDIYRYVIGVQFEILQDEGLKKRLVQLDKLLRLLPSRLNLKS 309          
BLAST of mRNA_H-elongata_contig177904.4685.1 vs. uniprot
Match: A0A126X2E1_9PHAE (Putative LOV domain-containing protein n=2 Tax=Scytosiphon TaxID=27966 RepID=A0A126X2E1_9PHAE)

HSP 1 Score: 290 bits (741), Expect = 1.170e-88
Identity = 141/151 (93.38%), Postives = 146/151 (96.69%), Query Frame = 1
Query:    1 PSDADEWLNMFVSTAEYFPACIVISDMTIPGAPMVYINGEFTKTTGYTKEEAVGRNCRFLQGPETEPESIAVIRNTLSKGQDCHVKLTNYRKNGEKFQNLLSMKPVFDADDIYRYVIGVQFEITQDVGLKKRLVQLDKLLRLLPSRLNLKS 453
            P DAD+WLNMF+S+AE FPACIVISDMTIPGAPMVYINGEFTKTTGYTKEEAVGRNCRFLQGPETEPESIAVIRNTLSKGQDCHVKLTNYRKNGEKFQNLLSMKPVFD D+IYRYVIGVQFEI +D GLKKRLVQLDKLLRLLPSRLNLKS
Sbjct:  623 PQDADDWLNMFISSAESFPACIVISDMTIPGAPMVYINGEFTKTTGYTKEEAVGRNCRFLQGPETEPESIAVIRNTLSKGQDCHVKLTNYRKNGEKFQNLLSMKPVFDGDNIYRYVIGVQFEILEDKGLKKRLVQLDKLLRLLPSRLNLKS 773          
BLAST of mRNA_H-elongata_contig177904.4685.1 vs. uniprot
Match: A0A482RNG8_9ARCH (PAS domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RNG8_9ARCH)

HSP 1 Score: 265 bits (678), Expect = 2.800e-88
Identity = 128/151 (84.77%), Postives = 139/151 (92.05%), Query Frame = 1
Query:    1 PSDADEWLNMFVSTAEYFPACIVISDMTIPGAPMVYINGEFTKTTGYTKEEAVGRNCRFLQGPETEPESIAVIRNTLSKGQDCHVKLTNYRKNGEKFQNLLSMKPVFDADDIYRYVIGVQFEITQDVGLKKRLVQLDKLLRLLPSRLNLKS 453
            P DAD+WLN+FVSTAE  PACIVISDMTIPGAPMVY+N EF KTTGY KEEA+GRNCRFLQGP+TEPE+I VIRNTLSKGQDCHVKLTNYRKNGE FQNLLSMKPVFDAD IYRYVIGVQFEI +D  LK+RL+QLDKLLRLLPS+LNL+S
Sbjct:   10 PQDADDWLNIFVSTAESLPACIVISDMTIPGAPMVYVNQEFCKTTGYGKEEAIGRNCRFLQGPDTEPEAIQVIRNTLSKGQDCHVKLTNYRKNGEMFQNLLSMKPVFDADGIYRYVIGVQFEIKEDDKLKERLIQLDKLLRLLPSKLNLRS 160          
BLAST of mRNA_H-elongata_contig177904.4685.1 vs. uniprot
Match: A0A7S1UBY0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UBY0_9STRA)

HSP 1 Score: 270 bits (691), Expect = 7.410e-84
Identity = 128/151 (84.77%), Postives = 142/151 (94.04%), Query Frame = 1
Query:    1 PSDADEWLNMFVSTAEYFPACIVISDMTIPGAPMVYINGEFTKTTGYTKEEAVGRNCRFLQGPETEPESIAVIRNTLSKGQDCHVKLTNYRKNGEKFQNLLSMKPVFDADDIYRYVIGVQFEITQDVGLKKRLVQLDKLLRLLPSRLNLKS 453
            P DAD+WLNMFVS+AE FPACIVISDMTIPGAPMVY+NGEF++TTGYTKEE+VGRNCRFLQGP+TEPESI VIRNTLSKGQDCHV LTNYRKNGEKF+NLLSM+PVFDAD+IYRYVIGVQFE+ QD  LKKRLVQLDKLL+LLP ++ LKS
Sbjct:  203 PQDADDWLNMFVSSAESFPACIVISDMTIPGAPMVYVNGEFSRTTGYTKEESVGRNCRFLQGPDTEPESIQVIRNTLSKGQDCHVLLTNYRKNGEKFRNLLSMRPVFDADNIYRYVIGVQFEVVQDKNLKKRLVQLDKLLKLLPRKIGLKS 353          
BLAST of mRNA_H-elongata_contig177904.4685.1 vs. uniprot
Match: A0A835YT73_9STRA (PAS/PAC sensor hybrid histidine kinase putative blue light receptor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT73_9STRA)

HSP 1 Score: 277 bits (709), Expect = 1.130e-83
Identity = 137/149 (91.95%), Postives = 140/149 (93.96%), Query Frame = 1
Query:    7 DADEWLNMFVSTAEYFPACIVISDMTIPGAPMVYINGEFTKTTGYTKEEAVGRNCRFLQGPETEPESIAVIRNTLSKGQDCHVKLTNYRKNGEKFQNLLSMKPVFDADDIYRYVIGVQFEITQDVGLKKRLVQLDKLLRLLPSRLNLKS 453
            DAD+WLNMFVSTAE FPACIVISDMTIPGAPMVYIN EFTK TGYTKEEAVGRNCRFLQGP+TEPESIAVIRNTLSKGQDCHVKLTNYRKNG+KFQNLLSMKPVFD D IYRYVIGVQFEI  D GLKKRLVQLDKLLRLLPSRL LKS
Sbjct:  946 DADDWLNMFVSTAESFPACIVISDMTIPGAPMVYINSEFTKVTGYTKEEAVGRNCRFLQGPDTEPESIAVIRNTLSKGQDCHVKLTNYRKNGDKFQNLLSMKPVFDGDGIYRYVIGVQFEIIADQGLKKRLVQLDKLLRLLPSRLPLKS 1094          
BLAST of mRNA_H-elongata_contig177904.4685.1 vs. uniprot
Match: A0A7S1UEB3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UEB3_9STRA)

HSP 1 Score: 270 bits (691), Expect = 8.310e-82
Identity = 128/151 (84.77%), Postives = 142/151 (94.04%), Query Frame = 1
Query:    1 PSDADEWLNMFVSTAEYFPACIVISDMTIPGAPMVYINGEFTKTTGYTKEEAVGRNCRFLQGPETEPESIAVIRNTLSKGQDCHVKLTNYRKNGEKFQNLLSMKPVFDADDIYRYVIGVQFEITQDVGLKKRLVQLDKLLRLLPSRLNLKS 453
            P DAD+WLNMFVS+AE FPACIVISDMTIPGAPMVY+NGEF++TTGYTKEE+VGRNCRFLQGP+TEPESI VIRNTLSKGQDCHV LTNYRKNGEKF+NLLSM+PVFDAD+IYRYVIGVQFE+ QD  LKKRLVQLDKLL+LLP ++ LKS
Sbjct:  542 PQDADDWLNMFVSSAESFPACIVISDMTIPGAPMVYVNGEFSRTTGYTKEESVGRNCRFLQGPDTEPESIQVIRNTLSKGQDCHVLLTNYRKNGEKFRNLLSMRPVFDADNIYRYVIGVQFEVVQDKNLKKRLVQLDKLLKLLPRKIGLKS 692          
BLAST of mRNA_H-elongata_contig177904.4685.1 vs. uniprot
Match: A0A835YJF7_9STRA (PAS domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJF7_9STRA)

HSP 1 Score: 241 bits (615), Expect = 7.130e-74
Identity = 111/150 (74.00%), Postives = 133/150 (88.67%), Query Frame = 1
Query:    4 SDADEWLNMFVSTAEYFPACIVISDMTIPGAPMVYINGEFTKTTGYTKEEAVGRNCRFLQGPETEPESIAVIRNTLSKGQDCHVKLTNYRKNGEKFQNLLSMKPVFDADDIYRYVIGVQFEITQDVGLKKRLVQLDKLLRLLPSRLNLKS 453
            +DAD+WL  F++TA+ FPACIV+SDMT PGAPM+++N  F K TGY+KEE VGRNCRFLQGP+TEPE+IA+IR+TLS+GQDCHVKLTNYRKNGEKFQNLLSMKPVFDA+ IYRYVIGVQFE+  D GLK+RL QLDKLL ++PS+L  K+
Sbjct:  235 TDADDWLKAFIATADSFPACIVVSDMTQPGAPMIFVNDAFCKVTGYSKEETVGRNCRFLQGPDTEPEAIALIRSTLSQGQDCHVKLTNYRKNGEKFQNLLSMKPVFDANGIYRYVIGVQFEVVADKGLKRRLSQLDKLLTMMPSKLQTKA 384          
BLAST of mRNA_H-elongata_contig177904.4685.1 vs. uniprot
Match: A0A7S4IDC3_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4IDC3_9EUKA)

HSP 1 Score: 211 bits (536), Expect = 1.280e-66
Identity = 95/151 (62.91%), Postives = 123/151 (81.46%), Query Frame = 1
Query:    1 PSDADEWLNMFVSTAEYFPACIVISDMTIPGAPMVYINGEFTKTTGYTKEEAVGRNCRFLQGPETEPESIAVIRNTLSKGQDCHVKLTNYRKNGEKFQNLLSMKPVFDADDIYRYVIGVQFEITQDVGLKKRLVQLDKLLRLLPSRLNLKS 453
            P D   W++ FV+ AE +PACIVISDM +PG PM ++N EF KTTGY K E  GRNCRFLQGP+TEP+S+AVI++TL +G DCHVKLTNYRKNG+ F+NLL+M+PV D++ +YR+ IGVQFE+T+D+ LK RL +LDKL++LLPS L + S
Sbjct:   12 PEDCAGWIHSFVAVAETYPACIVISDMQVPGNPMFFVNQEFCKTTGYPKHEVQGRNCRFLQGPKTEPQSVAVIQDTLRRGVDCHVKLTNYRKNGDLFENLLTMRPVHDSNGVYRFCIGVQFEVTRDLSLKSRLAKLDKLVKLLPSTLEVSS 162          
BLAST of mRNA_H-elongata_contig177904.4685.1 vs. uniprot
Match: F0YGV8_AURAN (PAS domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YGV8_AURAN)

HSP 1 Score: 206 bits (524), Expect = 3.030e-66
Identity = 91/123 (73.98%), Postives = 109/123 (88.62%), Query Frame = 1
Query:    1 PSDADEWLNMFVSTAEYFPACIVISDMTIPGAPMVYINGEFTKTTGYTKEEAVGRNCRFLQGPETEPESIAVIRNTLSKGQDCHVKLTNYRKNGEKFQNLLSMKPVFDADDIYRYVIGVQFEI 369
            P DADEWL+ F++ AE +PACIV+SDMTIPGAPMVY+N EF + T Y +EEAVGRNCRFLQGP+TEPESI VI+ TL KG+DCHV LTNYRK+G+KF+NLLSM+PV+DADD+YRY IGVQFE+
Sbjct:    3 PQDADEWLSSFITFAETWPACIVVSDMTIPGAPMVYVNPEFCRVTEYPREEAVGRNCRFLQGPDTEPESIQVIQETLCKGEDCHVLLTNYRKSGDKFKNLLSMRPVYDADDVYRYTIGVQFEV 125          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig177904.4685.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A126WYE1_SCYLO4.690e-9395.36Putative LOV domain-containing protein n=2 Tax=Scy... [more]
D7FQX8_ECTSI1.960e-9197.35Helmchrome putative blue light receptor for photot... [more]
A0A126X2E1_9PHAE1.170e-8893.38Putative LOV domain-containing protein n=2 Tax=Scy... [more]
A0A482RNG8_9ARCH2.800e-8884.77PAS domain-containing protein n=1 Tax=archaeon Tax... [more]
A0A7S1UBY0_9STRA7.410e-8484.77Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A835YT73_9STRA1.130e-8391.95PAS/PAC sensor hybrid histidine kinase putative bl... [more]
A0A7S1UEB3_9STRA8.310e-8284.77Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A835YJF7_9STRA7.130e-7474.00PAS domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S4IDC3_9EUKA1.280e-6662.91Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
F0YGV8_AURAN3.030e-6673.98PAS domain-containing protein (Fragment) n=1 Tax=A... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig177904contigH-elongata_contig177904:214..666 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score280.4
Seed ortholog evalue4.6e-73
Seed eggNOG ortholog2880.D7FQX8
KEGG koko:K20715
EggNOG free text desc.PAS domain
EggNOG OGs2S3IW@2759,COG2202@1
EC2.7.11.1
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001
Hectar predicted targeting categoryother localisation
Exons1
Model size453
Cds size426
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930028.5005698-CDS-H-elongata_contig177904:213..6391622930028.5005698-CDS-H-elongata_contig177904:213..639Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig177904 214..639 -
1691679252.6125343-CDS-H-elongata_contig177904:213..6391691679252.6125343-CDS-H-elongata_contig177904:213..639Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig177904 214..639 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930028.5147085-UTR-H-elongata_contig177904:639..6661622930028.5147085-UTR-H-elongata_contig177904:639..666Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig177904 640..666 -
1691679252.6218424-UTR-H-elongata_contig177904:639..6661691679252.6218424-UTR-H-elongata_contig177904:639..666Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig177904 640..666 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig177904.4685.1prot_H-elongata_contig177904.4685.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig177904 214..639 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig177904.4685.1

>prot_H-elongata_contig177904.4685.1 ID=prot_H-elongata_contig177904.4685.1|Name=mRNA_H-elongata_contig177904.4685.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=142bp
MFVSTAEYFPACIVISDMTIPGAPMVYINGEFTKTTGYTKEEAVGRNCRF
LQGPETEPESIAVIRNTLSKGQDCHVKLTNYRKNGEKFQNLLSMKPVFDA
DDIYRYVIGVQFEITQDVGLKKRLVQLDKLLRLLPSRLNLKS
back to top

mRNA from alignment at H-elongata_contig177904:214..666-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig177904.4685.1 ID=mRNA_H-elongata_contig177904.4685.1|Name=mRNA_H-elongata_contig177904.4685.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=453bp|location=Sequence derived from alignment at H-elongata_contig177904:214..666- (Himanthalia elongata Himel1 dioecious)
CCGAGTGACGCTGACGAGTGGCTAAACATGTTCGTGTCCACCGCAGAATA CTTTCCAGCGTGCATTGTGATCTCCGATATGACCATACCCGGCGCCCCCA TGGTGTACATAAACGGCGAATTCACAAAAACCACTGGGTATACAAAGGAA GAGGCGGTCGGCCGGAACTGCCGCTTCCTTCAGGGTCCTGAGACAGAACC CGAGTCCATTGCTGTCATCCGTAATACCCTCTCCAAGGGGCAGGATTGCC ACGTGAAGCTCACGAACTACCGTAAGAACGGCGAGAAATTCCAGAACCTT TTGTCGATGAAGCCCGTATTCGATGCAGACGACATCTACCGGTACGTGAT CGGCGTGCAATTCGAGATAACTCAGGACGTGGGATTGAAGAAGCGACTCG TGCAACTGGATAAGCTTCTACGGCTTCTGCCTAGCCGTCTAAATCTCAAG TCG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig177904:214..666-

>mRNA_H-elongata_contig177904.4685.1 ID=mRNA_H-elongata_contig177904.4685.1|Name=mRNA_H-elongata_contig177904.4685.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=852bp|location=Sequence derived from alignment at H-elongata_contig177904:214..666- (Himanthalia elongata Himel1 dioecious)
ATGTTCGTGTCCACCGCAGAATACTTTCCAGCGTGCATTGTGATCTCCGA
TATGACCATACCCGGCGCCCCCATGGTGTACATAAACGGCGAATTCACAA
AAACCACTGGGTATACAAAGGAAGAGGCGGTCGGCCGGAACTGCCGCTTC
CTTCAGGGTCCTGAGACAGAACCCGAGTCCATTGCTGTCATCCGTAATAC
CCTCTCCAAGGGGCAGGATTGCCACGTGAAGCTCACGAACTACCGTAAGA
ACGGCGAGAAATTCCAGAACCTTTTGTCGATGAAGCCCGTATTCGATGCA
GACGACATCTACCGGTACGTGATCGGCGTGCAATTCGAGATAACTCAGGA
CGTGGGATTGAAGAAGCGACTCGTGCAACTGGATAAGCTTCTACGGCTTC
TGCCTAGCCGTCTAAATCTCAAGTCGATGTTCGTGTCCACCGCAGAATAC
TTTCCAGCGTGCATTGTGATCTCCGATATGACCATACCCGGCGCCCCCAT
GGTGTACATAAACGGCGAATTCACAAAAACCACTGGGTATACAAAGGAAG
AGGCGGTCGGCCGGAACTGCCGCTTCCTTCAGGGTCCTGAGACAGAACCC
GAGTCCATTGCTGTCATCCGTAATACCCTCTCCAAGGGGCAGGATTGCCA
CGTGAAGCTCACGAACTACCGTAAGAACGGCGAGAAATTCCAGAACCTTT
TGTCGATGAAGCCCGTATTCGATGCAGACGACATCTACCGGTACGTGATC
GGCGTGCAATTCGAGATAACTCAGGACGTGGGATTGAAGAAGCGACTCGT
GCAACTGGATAAGCTTCTACGGCTTCTGCCTAGCCGTCTAAATCTCAAGT
CG
back to top