mRNA_H-elongata_contig177745.4679.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig177745.4679.1
Unique NamemRNA_H-elongata_contig177745.4679.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig177745.4679.1 vs. uniprot
Match: D8LIQ9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIQ9_ECTSI)

HSP 1 Score: 155 bits (391), Expect = 5.230e-46
Identity = 79/109 (72.48%), Postives = 97/109 (88.99%), Query Frame = 1
Query:    1 QTKQYFREYMEDFNTATLPHEKYINLEKWEMAEFHRKKARDAKKHAAGDSQTIKEDEMEMNMKRRRMKEEYNKKYDSLVKKSITGTKRETMQSQDLLRAQMQQAYKEGE 327
            +TKQYFREYMEDFNT TLPH+KYI+LEKWEMAEFHRKKA +AK+ A+GD+ +++EDEMEMN+K+RR +E  N K+D+LVK SITG+KRE MQSQDLLRA+MQ AYK G+
Sbjct:   48 ETKQYFREYMEDFNTCTLPHDKYIDLEKWEMAEFHRKKASEAKRRASGDALSMREDEMEMNLKKRRAREAANAKFDNLVKASITGSKRENMQSQDLLRAKMQNAYKHGD 156          
BLAST of mRNA_H-elongata_contig177745.4679.1 vs. uniprot
Match: A0A835ZAA4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAA4_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 3.150e-14
Identity = 52/141 (36.88%), Postives = 81/141 (57.45%), Query Frame = 1
Query:    1 QTKQYFREYMEDFNTATLPHEKYINLEKWEMAEFH-------------------------------RKKARDAKKHAAGDSQTIKEDEMEMNMKRRRMKE-EYNKKYDSLVKKSITGTKRETMQSQDLLRAQMQQAYKEGE 327
            + K++FREYMED+NTATLPHEKYIN  KWEM E+                                +KK ++AK+  AG   T   DE  + ++R+R K+    +++D+++  ++   K + M+SQ+LLRA+MQQAY++G+
Sbjct:  269 EVKEFFREYMEDYNTATLPHEKYINYAKWEMEEWESEWSSLAXXXXXXXXXXXXXXXXXXXPGLAAQKKRKEAKRLKAGAPVTA-GDEAAVALERKREKQLREQQEFDNMIMATMRSNKVQEMRSQELLRAEMQQAYRQGD 408          
BLAST of mRNA_H-elongata_contig177745.4679.1 vs. uniprot
Match: A0A7S1U4G1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U4G1_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 9.080e-14
Identity = 43/109 (39.45%), Postives = 69/109 (63.30%), Query Frame = 1
Query:    1 QTKQYFREYMEDFNTATLPHEKYINLEKWEMAEFHRKKARDAKKHAAGDSQTIKEDEMEMNMKRRRMKEEYNKKYDSLVKKSITGTKRETMQSQDLLRAQMQQAYKEGE 327
            +T + F E+ EDFNT TLPHEKY +LE WEMAE+ +++A  A+  +   S  ++E+E   +  RR  +E   + Y+ +V++ +   K + M+ Q LLRA+ Q A+K G+
Sbjct:   85 ETMELFAEFAEDFNTVTLPHEKYYDLEAWEMAEYRKREAAAAEARSGATSLQLEEEEAMRS--RREAEERKQRSYNDMVRQMLNKDKVDEMRHQQLLRAEAQIAFKSGD 191          
BLAST of mRNA_H-elongata_contig177745.4679.1 vs. uniprot
Match: T0RK20_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0RK20_SAPDV)

HSP 1 Score: 74.3 bits (181), Expect = 1.860e-13
Identity = 45/104 (43.27%), Postives = 69/104 (66.35%), Query Frame = 1
Query:   13 YFREYMEDFNTATLPHEKYINLEKWEMAEFHRKKARDAKKHAAGDSQTIKEDEMEMNMKRRRMKEEYNKKYDSLVKKSITGTKRETMQSQDLLRAQMQQAYKEG 324
            +FR+YMED+NTATLPHEKY ++EK+E  +F +++A+ AK+H      + KE+E     +R R + + NKK  +L+ +++  +K E M+ Q  LR QMQ  YK G
Sbjct:  192 HFRDYMEDYNTATLPHEKYYDVEKYEQRKFAKEQAKRAKRHKP----SAKEEEETAYAERMRQRADANKKEFALIMQTMDRSKIEHMREQQRLRDQMQMHYKAG 291          
BLAST of mRNA_H-elongata_contig177745.4679.1 vs. uniprot
Match: A0A8K1FMQ5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FMQ5_PYTOL)

HSP 1 Score: 71.2 bits (173), Expect = 1.430e-12
Identity = 45/109 (41.28%), Postives = 71/109 (65.14%), Query Frame = 1
Query:   10 QYFREYMEDFNTATLPHEKYINLEKWEMAEFHRKKARDAKKH--AAGDSQTIKEDEMEMNMKRRRMKEEYNKKYDS--LVKKSITGTKRETMQSQDLLRAQMQQAYKEG 324
            +YF+EYMED+NTAT+PHEKY ++EK+EM ++ + + + A+KH  AAG S+   E   E  ++R R  +   K+ +   L+ +++   K E M+ Q+ LRA+MQ  YK G
Sbjct:  135 EYFKEYMEDYNTATMPHEKYYDIEKYEMGKYEKDQKKKARKHLEAAGSSRGGSEVPDEDAVRRERQAQRAAKEQEEFRLIMQTMDKDKIEAMRRQEQLRAEMQMHYKAG 243          
BLAST of mRNA_H-elongata_contig177745.4679.1 vs. uniprot
Match: A0A067BIG6_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BIG6_SAPPC)

HSP 1 Score: 69.7 bits (169), Expect = 4.120e-12
Identity = 43/104 (41.35%), Postives = 67/104 (64.42%), Query Frame = 1
Query:   13 YFREYMEDFNTATLPHEKYINLEKWEMAEFHRKKARDAKKHAAGDSQTIKEDEMEMNMKRRRMKEEYNKKYDSLVKKSITGTKRETMQSQDLLRAQMQQAYKEG 324
            +FR+YMED+NTATLPH KY ++EK+E  +  +++A+ AK+H    +    E+E     +R R + E NKK  +L+ +++  +K E+M+ Q  LR QMQ  YK G
Sbjct:  107 HFRDYMEDYNTATLPHAKYYDIEKYEQRKLAKEQAKRAKRHKPRPA----EEEATAYAERMRQRAEANKKEFALILQTMDRSKIESMREQQRLRDQMQMHYKAG 206          
BLAST of mRNA_H-elongata_contig177745.4679.1 vs. uniprot
Match: A0A024TMH4_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TMH4_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 6.890e-12
Identity = 47/103 (45.63%), Postives = 64/103 (62.14%), Query Frame = 1
Query:   16 FREYMEDFNTATLPHEKYINLEKWEMAEFHRKKARDAKKHAAGDSQTIKEDEMEMNMKRRRMKEEYNKKYDSLVKKSITGTKRETMQSQDLLRAQMQQAYKEG 324
            F+EYMED+NTATLPHEKY ++EK+EM + HRKK    K    G +    +DE  M  +R R + E   K  SL+ ++++  K E M+ Q+ LR QMQ  YK G
Sbjct:  132 FKEYMEDYNTATLPHEKYYDVEKYEMRQ-HRKKEGKRK----GGATNAHDDEEAMRRERLRQRVEEENKDFSLIMQTMSKEKIENMRYQEKLRTQMQLHYKSG 229          
BLAST of mRNA_H-elongata_contig177745.4679.1 vs. uniprot
Match: A0A484EF14_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EF14_BRELC)

HSP 1 Score: 70.1 bits (170), Expect = 7.260e-12
Identity = 45/105 (42.86%), Postives = 69/105 (65.71%), Query Frame = 1
Query:   16 FREYMEDFNTATLPHEKYINLEKWEMAEFHRKKAR-DAKKHAAGD-SQTIKEDEMEMNMKRRRMKEEYNKKYDSLVKKSITGTKRETMQSQDLLRAQMQQAYKEG 324
            F+EYMEDFNT TLPHEKY ++EK+EM ++ +++ +  AK  +A D +  I+ DE  +  +R+ ++E+  K+   LV + +   K E M+ Q+ LRAQMQ  YK G
Sbjct:  218 FKEYMEDFNTCTLPHEKYYDIEKYEMLQYQKQQRKAHAKLESASDMAMDIQADEDRVRRERQALREKKEKEEFRLVLQLMDKEKIEAMREQERLRAQMQMFYKSG 322          
BLAST of mRNA_H-elongata_contig177745.4679.1 vs. uniprot
Match: W4FFX2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FFX2_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 7.690e-12
Identity = 46/106 (43.40%), Postives = 67/106 (63.21%), Query Frame = 1
Query:   16 FREYMEDFNTATLPHEKYINLEKWEMAEFHRKKARDAK-KH--AAGDSQTIKEDEMEMNMKRRRMKEEYNKKYDSLVKKSITGTKRETMQSQDLLRAQMQQAYKEG 324
            F+EYMED+NTAT PHEKY ++EK+EM + H+K ++D K KH  A GD +        M  +R R + E  +K   L+ ++++  K E M++Q+ LR QMQ  YK G
Sbjct:  140 FKEYMEDYNTATFPHEKYYDVEKYEMRKHHKKASKDNKRKHDDAPGDEEA-------MRRERLRQRIEAGQKDFGLIMQTMSKEKIEGMRNQEKLRTQMQLHYKSG 238          
BLAST of mRNA_H-elongata_contig177745.4679.1 vs. uniprot
Match: B8CDB5_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CDB5_THAPS)

HSP 1 Score: 70.1 bits (170), Expect = 7.840e-12
Identity = 48/112 (42.86%), Postives = 72/112 (64.29%), Query Frame = 1
Query:   10 QYFREYMEDFNTATLPHEKYINLEKWEMAEFHRKKARDAKKHAAGDSQT----IKEDEMEMNMKRRRMKEEYNKKYDSL--VKKSITGTKRETMQSQDLLRAQMQQAYKEGE 327
            +YF+EY EDFNT T+PHEKY N +KWEM E+ RKK R+A   A+G ++T    I  DE +   +  +  ++  KK + L  V++S+T  KRE M++Q  L+ ++  AYK G+
Sbjct:  241 EYFKEYAEDFNTGTMPHEKYYNYDKWEMEEYERKK-REAAAKASGGTETNNTSIALDEFQHREQMAQRAKQ--KKLEELKRVQQSMTAEKREEMKNQARLKHELAVAYKTGD 349          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig177745.4679.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIQ9_ECTSI5.230e-4672.48Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZAA4_9STRA3.150e-1436.88Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1U4G1_9STRA9.080e-1439.45Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
T0RK20_SAPDV1.860e-1343.27Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A8K1FMQ5_PYTOL1.430e-1241.28Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A067BIG6_SAPPC4.120e-1241.35Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A024TMH4_9STRA6.890e-1245.63Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A484EF14_BRELC7.260e-1242.86Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
W4FFX2_9STRA7.690e-1243.40Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
B8CDB5_THAPS7.840e-1242.86Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig177745contigH-elongata_contig177745:376..1204 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.9
Seed ortholog evalue8.2e-32
Seed eggNOG ortholog2880.D8LIQ9
EggNOG OGs28HHB@1,2QPV8@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-03_001150.1
Exons2
Model size330
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig177745.4679.1prot_H-elongata_contig177745.4679.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig177745 403..1204 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930027.9048793-UTR-H-elongata_contig177745:375..4021622930027.9048793-UTR-H-elongata_contig177745:375..402Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig177745 376..402 +
1691679252.3233712-UTR-H-elongata_contig177745:375..4021691679252.3233712-UTR-H-elongata_contig177745:375..402Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig177745 376..402 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930027.9207454-CDS-H-elongata_contig177745:402..4811622930027.9207454-CDS-H-elongata_contig177745:402..481Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig177745 403..481 +
1691679252.3371248-CDS-H-elongata_contig177745:402..4811691679252.3371248-CDS-H-elongata_contig177745:402..481Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig177745 403..481 +
1622930027.9390674-CDS-H-elongata_contig177745:980..12041622930027.9390674-CDS-H-elongata_contig177745:980..1204Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig177745 981..1204 +
1691679252.3458395-CDS-H-elongata_contig177745:980..12041691679252.3458395-CDS-H-elongata_contig177745:980..1204Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig177745 981..1204 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig177745.4679.1

>prot_H-elongata_contig177745.4679.1 ID=prot_H-elongata_contig177745.4679.1|Name=mRNA_H-elongata_contig177745.4679.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
MEDFNTATLPHEKYINLEKWEMAEFHRKKARDAKKHAAGDSQTIKEDEME
MNMKRRRMKEEYNKKYDSLVKKSITGTKRETMQSQDLLRAQMQQAYKEGE
*
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mRNA from alignment at H-elongata_contig177745:376..1204+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig177745.4679.1 ID=mRNA_H-elongata_contig177745.4679.1|Name=mRNA_H-elongata_contig177745.4679.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=829bp|location=Sequence derived from alignment at H-elongata_contig177745:376..1204+ (Himanthalia elongata Himel1 dioecious)
CAGACGAAGCAGTACTTCAGGGAGTACATGGAGGACTTCAACACCGCCAC TCTGCCTCACGAGAAGTACATTAATCTGGAGAAGTGGGAGATGGCGGAGT TCCACCGTGAGTTCCGTGGCGGTGCGCAAGCGCGATCGGCGGGGGATGGG GGGGGGGCTATTCGAGGAGAGAAAGAGTACGGGACGCATGGACCGGCATG GTTGGTGTATCTGGGGTCGACATGTGTTACAAACCAAGTTCAAGCGTGAA ATGGGCTTGATTCGACCAATCCAAATTGTCCGCCAGTAGCGATGTGTTAC CTGCTTTTTGGAGATGCAGAGTTCGGCGTCCTATAGCTCGGGACTCGCAT CCTATAGGAAGCTCCTGGACATGCAAGCAGGAGCTTAAGCTCAAGTATTT CAGGATCGCCAGCGCCGCTCTTCGTTCGCCAACTTTTCGGAGACGTTTGG CCCCTCTTTCCAAATATATCAGGGTCCGTCCCTAGACTACTTTAGCATAT AATCAATATCAACAATGTACTATAGTATACAATAGTATACAATCGATAAG AGCAATATTCACCCGAACTTTCCCCGCTTGTCTCATCCGCTACACATCCC CGCAGGCAAGAAGGCTCGCGACGCAAAGAAACACGCCGCTGGAGACTCTC AGACCATAAAAGAAGATGAAATGGAGATGAACATGAAACGCCGTCGGATG AAAGAGGAGTACAACAAGAAGTATGACAGCCTCGTGAAGAAGTCTATCAC GGGGACCAAGCGCGAGACCATGCAGAGTCAGGACCTTCTCAGGGCCCAGA TGCAGCAGGCCTACAAGGAGGGTGAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig177745:376..1204+

>mRNA_H-elongata_contig177745.4679.1 ID=mRNA_H-elongata_contig177745.4679.1|Name=mRNA_H-elongata_contig177745.4679.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig177745:376..1204+ (Himanthalia elongata Himel1 dioecious)
ATGGAGGACTTCAACACCGCCACTCTGCCTCACGAGAAGTACATTAATCT
GGAGAAGTGGGAGATGGCGGAGTTCCACCATGGAGGACTTCAACACCGCC
ACTCTGCCTCACGAGAAGTACATTAATCTGGAGAAGTGGGAGATGGCGGA
GTTCCACCGCAAGAAGGCTCGCGACGCAAAGAAACACGCCGCTGGAGACT
CTCAGACCATAAAAGAAGATGAAATGGAGATGAACATGAAACGCCGTCGG
ATGAAAGAGGAGTACAACAAGAAGTATGACAGCCTCGTGAAGAAGTCTAT
CACGGGGACCAAGCGCGAGACCATGCAGAGTCAGGACCTTCTCAGGGCCC
AGATGCAGCAGGCCTACAAGGAGGGTGAGTGAGCAAGAAGGCTCGCGACG
CAAAGAAACACGCCGCTGGAGACTCTCAGACCATAAAAGAAGATGAAATG
GAGATGAACATGAAACGCCGTCGGATGAAAGAGGAGTACAACAAGAAGTA
TGACAGCCTCGTGAAGAAGTCTATCACGGGGACCAAGCGCGAGACCATGC
AGAGTCAGGACCTTCTCAGGGCCCAGATGCAGCAGGCCTACAAGGAGGGT
GAGTGA
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