mRNA_H-elongata_contig177196.4648.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig177196.4648.1
Unique NamemRNA_H-elongata_contig177196.4648.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig177196.4648.1 vs. uniprot
Match: D7FN88_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN88_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 7.300e-20
Identity = 40/53 (75.47%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    4 FWPHSQAFSVLVFTAEISMRLFIAPISSKYGFSRWNYITSFFGIIDIASILPW 162
            F+   +AFSVLVFTAEISMRLFIAPISSKY FSRW Y++SFFG++D+ASI PW
Sbjct:  983 FFDGFEAFSVLVFTAEISMRLFIAPISSKYAFSRWKYLSSFFGVVDVASIAPW 1035
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BLAST of mRNA_H-elongata_contig177196.4648.1 vs. uniprot
Match: A0A836CDK7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDK7_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 2.730e-9
Identity = 27/48 (56.25%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:   19 QAFSVLVFTAEISMRLFIAPISSKYGFSRWNYITSFFGIIDIASILPW 162
            +AFSV +FT +   RL  AP+++ YG +  NY+TSFFGI+D+ASILPW
Sbjct:  997 EAFSVAIFTFDFVARLCTAPVNASYG-TPLNYLTSFFGIVDMASILPW 1043
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BLAST of mRNA_H-elongata_contig177196.4648.1 vs. uniprot
Match: A0A7S0AP21_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AP21_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 7.470e-7
Identity = 22/45 (48.89%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:   28 SVLVFTAEISMRLFIAPISSKYGFSRWNYITSFFGIIDIASILPW 162
            SV  F+ E  +RLF AP +++  +S W Y T+FFG++D+ SILPW
Sbjct:  126 SVAFFSVEYILRLFSAPKNNQALYSPWTYATTFFGLVDLISILPW 170
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BLAST of mRNA_H-elongata_contig177196.4648.1 vs. uniprot
Match: K0S063_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S063_THAOC)

HSP 1 Score: 49.7 bits (117), Expect = 1.750e-5
Identity = 22/48 (45.83%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:   19 QAFSVLVFTAEISMRLFIAPISSKYGFSRWNYITSFFGIIDIASILPW 162
            +A+SV  F+ + ++RLF A  S    +S W Y  +FFGI+D+ SILPW
Sbjct:  969 EAWSVFFFSLDYALRLFSAQKSRDALYSPWVYSQTFFGIVDLLSILPW 1016
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BLAST of mRNA_H-elongata_contig177196.4648.1 vs. uniprot
Match: A0A401XKI3_9FLAO (Potassium voltage gated channel, Shab-related subfamily, member 2 n=1 Tax=Thermaurantimonas aggregans TaxID=2173829 RepID=A0A401XKI3_9FLAO)

HSP 1 Score: 49.3 bits (116), Expect = 2.210e-5
Identity = 21/51 (41.18%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:   19 QAFSVLVFTAEISMRLFIAPISSKYGFSR---WNYITSFFGIIDIASILPW 162
            + F+V+VFT E  +R++IAP++  Y  SR     ++TSF+G+ID+ +I+P+
Sbjct:   64 ELFTVVVFTLEYVLRIWIAPVTETYAGSRSPRLRFVTSFYGLIDLLAIMPF 114
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BLAST of mRNA_H-elongata_contig177196.4648.1 vs. uniprot
Match: A0A7S3ANG1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3ANG1_9EUKA)

HSP 1 Score: 47.0 bits (110), Expect = 3.990e-5
Identity = 24/53 (45.28%), Postives = 33/53 (62.26%), Query Frame = 1 
Query:    4 FWPHSQAFSVLVFTAEISMRLFIAPISSKYGFSRWNYITSFFGIIDIASILPW 162
            F+   +A SV  FTAE  +R+F      ++ +S   Y T+FFGIIDI SILP+
Sbjct:   20 FFDVFEAVSVAAFTAEFGLRVFSIGKDREHLYSATFYATTFFGIIDILSILPY 72
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig177196.4648.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FN88_ECTSI7.300e-2075.47Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CDK7_9STRA2.730e-956.25Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0AP21_9STRA7.470e-748.89Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
K0S063_THAOC1.750e-545.83Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A401XKI3_9FLAO2.210e-541.18Potassium voltage gated channel, Shab-related subf... [more]
A0A7S3ANG1_9EUKA3.990e-545.28Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig177196contigH-elongata_contig177196:159..323 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.5
Seed ortholog evalue2.6e-16
Seed eggNOG ortholog2880.D7FN88
EggNOG free text desc.voltage-gated potassium channel activity
EggNOG OGsCOG2126@1,KOG1419@2759,KOG3713@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_003400.1
Exons1
Model size165
Cds size165
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930024.8645804-CDS-H-elongata_contig177196:158..3231622930024.8645804-CDS-H-elongata_contig177196:158..323Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig177196 159..323 -
1691679251.0845325-CDS-H-elongata_contig177196:158..3231691679251.0845325-CDS-H-elongata_contig177196:158..323Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig177196 159..323 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig177196.4648.1prot_H-elongata_contig177196.4648.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig177196 159..323 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig177196.4648.1

>prot_H-elongata_contig177196.4648.1 ID=prot_H-elongata_contig177196.4648.1|Name=mRNA_H-elongata_contig177196.4648.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=55bp
YFWPHSQAFSVLVFTAEISMRLFIAPISSKYGFSRWNYITSFFGIIDIAS
ILPW*
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mRNA from alignment at H-elongata_contig177196:159..323-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig177196.4648.1 ID=mRNA_H-elongata_contig177196.4648.1|Name=mRNA_H-elongata_contig177196.4648.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=165bp|location=Sequence derived from alignment at H-elongata_contig177196:159..323- (Himanthalia elongata Himel1 dioecious)
TATTTCTGGCCACACTCTCAGGCATTTTCCGTCTTGGTGTTCACCGCGGA
GATCTCGATGAGACTATTCATCGCTCCTATCTCCTCCAAGTACGGCTTCA
GCCGCTGGAACTATATCACCTCCTTCTTTGGGATCATCGACATCGCCTCC
ATCCTTCCCTGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig177196:159..323-

>mRNA_H-elongata_contig177196.4648.1 ID=mRNA_H-elongata_contig177196.4648.1|Name=mRNA_H-elongata_contig177196.4648.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at H-elongata_contig177196:159..323- (Himanthalia elongata Himel1 dioecious)
TATTTCTGGCCACACTCTCAGGCATTTTCCGTCTTGGTGTTCACCGCGGA
GATCTCGATGAGACTATTCATCGCTCCTATCTCCTCCAAGTACGGCTTCA
GCCGCTGGAACTATATCACCTCCTTCTTTGGGATCATCGACATCGCCTCC
ATCCTTCCCTGGTGATATTTCTGGCCACACTCTCAGGCATTTTCCGTCTT
GGTGTTCACCGCGGAGATCTCGATGAGACTATTCATCGCTCCTATCTCCT
CCAAGTACGGCTTCAGCCGCTGGAACTATATCACCTCCTTCTTTGGGATC
ATCGACATCGCCTCCATCCTTCCCTGGTGA
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