mRNA_H-elongata_contig177062.4645.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig177062.4645.1 vs. uniprot
Match: A0A6H5LMZ3_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LMZ3_9PHAE) HSP 1 Score: 66.6 bits (161), Expect = 6.350e-10 Identity = 55/161 (34.16%), Postives = 81/161 (50.31%), Query Frame = -1
Query: 3 HCGGRGHSGDKGCATMNADVVFAMSANEESDHDGSDCSAFISTH-LPNGGKCDQSKEFERFAVLGGKVGDER-------WVCDTGASQHFSNDSAHMLDFRECQKFMRTASGKRFPIE--GHGDLILHFRSEGEVVHLKLCNVAYVPQLPHNLLSLRAVAD 455
HC GHS DK CAT A + A + +SD D D AF + LP G+C AV G VG +V T A+ + +++REC +++ G + P+ G+GD+ + F +EG V + + N A+VP+ PHNLLSL A+A+
Sbjct: 109 HCAEWGHSKDK-CATEEA--ILAQIVHADSDADSVDNQAFCAAPGLP--GECG--------AVDLGLVGVTELGQDIMVYVAHTAATCSMIRCANAFVNYRECSGWVKGIGGNKAPVPLLGYGDVTVVFLTEGGRVPVLILNAAHVPESPHNLLSLSALAE 256
BLAST of mRNA_H-elongata_contig177062.4645.1 vs. uniprot
Match: A0A6G0X3B5_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X3B5_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 2.390e-8 Identity = 30/80 (37.50%), Postives = 45/80 (56.25%), Query Frame = -1
Query: 3 WVCDTGASQHFSNDSAHMLDFRECQKFMRTASGKRFPIEGHGDLILHFRSEGEVVHLKLCNVAYVPQLPHNLLSLRAVAD 242
WV D+GAS HF N+S+ + +R A+G IEG G + L + +V ++L NV+Y+P L +NL SL V+
Sbjct: 297 WVIDSGASDHFCNNSSWFTNLEPSTGVVRAANGGDMAIEGCGSIHLEMNTPSGIVEVELQNVSYMPSLQYNLFSLSRVSQ 376
BLAST of mRNA_H-elongata_contig177062.4645.1 vs. uniprot
Match: A0A6H5JRY9_9PHAE (CCHC-type domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRY9_9PHAE) HSP 1 Score: 59.7 bits (143), Expect = 1.680e-7 Identity = 46/143 (32.17%), Postives = 72/143 (50.35%), Query Frame = -1
Query: 3 DVVFAMSANEESDHDGSDCSAFISTH-LPNGGKCDQSKEFERFAVLGGKVGDER-------WVCDTGASQHFSNDSAHMLDFRECQKFMRTASGKRFPIE--GHGDLILHFRSEGEVVHLKLCNVAYVPQLPHNLLSLRAVAD 401
+ V A + +SD D D AF + LP G+C AV G VG +V DT A+ + +++REC +++ G + P+ G+GD+ + F +EG V + + N A+VP+ PHNLLSL A+A+
Sbjct: 476 EAVLAQIVHADSDADSVDNQAFCAAPGLP--GECG--------AVDLGLVGVTELGQDVMVYVADTAATCSMFRCANAFVNYRECSGWVKAIGGNKAPVPLLGYGDVTVVFLTEGGRVPVLILNAAHVPESPHNLLSLSALAE 608
BLAST of mRNA_H-elongata_contig177062.4645.1 vs. uniprot
Match: A0A6H5L6M8_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6M8_9PHAE) HSP 1 Score: 57.8 bits (138), Expect = 6.680e-7 Identity = 46/143 (32.17%), Postives = 72/143 (50.35%), Query Frame = -1
Query: 3 DVVFAMSANEESDHDGSDCSAFISTH-LPNGGKCDQSKEFERFAVLGGKVGDER-------WVCDTGASQHFSNDSAHMLDFRECQKFMRTASGKR--FPIEGHGDLILHFRSEGEVVHLKLCNVAYVPQLPHNLLSLRAVAD 401
+ V A + +SD D D AF + LP G+C AV G VG +V DT A+ + +++REC +++ G + P+ G+GD+ + F +EG V + + N A+VP+ PHNLLSL A+A+
Sbjct: 305 EAVLAQIVHADSDADSVDNQAFCAAPGLP--GECG--------AVDLGLVGVTELGQDVMVYVADTAATCSMFRCANAFVNYRECSGWVKGIRGNKALVPLLGYGDVTVVFLTEGGRVPVLILNAAHVPESPHNLLSLSALAE 437
BLAST of mRNA_H-elongata_contig177062.4645.1 vs. uniprot
Match: A0A6H5K8M7_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8M7_9PHAE) HSP 1 Score: 56.2 bits (134), Expect = 2.530e-6 Identity = 45/143 (31.47%), Postives = 71/143 (49.65%), Query Frame = -1
Query: 3 DVVFAMSANEESDHDGSDCSAFISTH-LPNGGKCDQSKEFERFAVLGGKVGDER-------WVCDTGASQHFSNDSAHMLDFRECQKFMRTASGKRFPIE--GHGDLILHFRSEGEVVHLKLCNVAYVPQLPHNLLSLRAVAD 401
+ V A + +SD D D AF + LP G+C AV G VG +V T A+ + +++REC +++ G + P+ G+GD+ + F +EG V + + N A+VP+ PHNLLSL A+A+
Sbjct: 477 EAVLAQIVHADSDADSVDNQAFCAAPGLP--GECG--------AVDLGLVGVTELGQDVMVYVAGTAATCSMFRCANAFVNYRECSGWVKGIGGNKAPVPLLGYGDVTVVFLTEGGRVPVLILNAAHVPESPHNLLSLSALAE 609
BLAST of mRNA_H-elongata_contig177062.4645.1 vs. uniprot
Match: A0A6H5JUG1_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUG1_9PHAE) HSP 1 Score: 55.1 bits (131), Expect = 6.000e-6 Identity = 29/82 (35.37%), Postives = 49/82 (59.76%), Query Frame = -1
Query: 3 WVCDTGASQHFSNDSAHMLDFRECQKFMRTASGKRFPIE--GHGDLILHFRSEGEVVHLKLCNVAYVPQLPHNLLSLRAVAD 242
+V DT A+ + +++RE +++ G + P+ G+GDL + F +EG V + + N A+VP+ PHNLLSL A+A+
Sbjct: 429 YVADTAATCSMFRCANAFVNYRERSGWVKGIGGNKAPVPLLGYGDLTVVFLTEGGRVPVLILNAAHVPESPHNLLSLSALAE 510
BLAST of mRNA_H-elongata_contig177062.4645.1 vs. uniprot
Match: A0A6H5JK64_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK64_9PHAE) HSP 1 Score: 54.3 bits (129), Expect = 1.210e-5 Identity = 44/143 (30.77%), Postives = 70/143 (48.95%), Query Frame = -1
Query: 3 DVVFAMSANEESDHDGSDCSAFISTH-LPNGGKCDQSKEFERFAVLGGKVGDER-------WVCDTGASQHFSNDSAHMLDFRECQKFMRTASGKR--FPIEGHGDLILHFRSEGEVVHLKLCNVAYVPQLPHNLLSLRAVAD 401
+ V A + +SD D D AF + LP G+C AV G VG +V DT A+ + +++REC +++ G + P+ G+ D+ + F +EG + + N A+VP+ PHNLLSL A+A+
Sbjct: 205 EAVLAQIVHADSDADSVDNQAFCAAPGLP--GECG--------AVDLGLVGVTELGQDVMVYVADTAATCSMFRCANAFVNYRECSSWVKGIGGNKASVPLLGYVDVTVVFLTEGGKAPVLILNAAHVPESPHNLLSLSALAE 337
BLAST of mRNA_H-elongata_contig177062.4645.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE) HSP 1 Score: 53.1 bits (126), Expect = 2.610e-5 Identity = 25/64 (39.06%), Postives = 42/64 (65.62%), Query Frame = -1
Query: 3 LDFRECQKFMRTASGKRFPIE--GHGDLILHFRSEGEVVHLKLCNVAYVPQLPHNLLSLRAVAD 188
+++REC +++ G P+ G+GD+ + F +EG V + + N A+VP+ PHNLLSL A+A+
Sbjct: 9 VNYRECSGWVKGIGGNNAPVPPLGYGDVTVVFLTEGGRVPVLILNAAHVPESPHNLLSLSALAE 72
BLAST of mRNA_H-elongata_contig177062.4645.1 vs. uniprot
Match: A0A6H5KNB1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNB1_9PHAE) HSP 1 Score: 52.8 bits (125), Expect = 3.810e-5 Identity = 26/82 (31.71%), Postives = 48/82 (58.54%), Query Frame = -1
Query: 3 WVCDTGASQHFSNDSAHMLDFRECQKFMRTASGKRFPIE--GHGDLILHFRSEGEVVHLKLCNVAYVPQLPHNLLSLRAVAD 242
++ DT A+ + +++REC +++ G + P+ G+GD+ + + G V + + N A+VP+ PHNLLSL A+A+
Sbjct: 3 YLADTAATCSMFRCANAFVNYRECSGWVKEIGGNKAPVPLLGYGDVTVILLTVGGRVPVLILNAAHVPESPHNLLSLSALAE 84
BLAST of mRNA_H-elongata_contig177062.4645.1 vs. uniprot
Match: A0A8H8NUS4_9AGAM (Integrase core domain protein n=2 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H8NUS4_9AGAM) HSP 1 Score: 52.4 bits (124), Expect = 5.770e-5 Identity = 28/85 (32.94%), Postives = 45/85 (52.94%), Query Frame = -1
Query: 3 ERWVCDTGASQHFSNDSAHMLDFRECQKFMRTASGKRFPIEGHGD---LILHFRSEGEVVHLKLCNVAYVPQLPHNLLSLRAVAD 248
+ W+ D+G + H + D ++ + ++ +GK PI G G L L+ + E ++L NVA+VP LP NL+SL V D
Sbjct: 346 DTWIADSGTTTHIAIDRNAFSNYTKSSGYVAGVTGKE-PIMGRGTVELLCLNNTEKNEYTKIRLTNVAHVPSLPANLISLSLVTD 429 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig177062.4645.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig177062.4645.1 >prot_H-elongata_contig177062.4645.1 ID=prot_H-elongata_contig177062.4645.1|Name=mRNA_H-elongata_contig177062.4645.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bp MYHLSLRPKVQDKVTVTLDRESLPASRPHKLLAFTEIEHVRRVIAKMLRSback to top mRNA from alignment at H-elongata_contig177062:486..940+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig177062.4645.1 ID=mRNA_H-elongata_contig177062.4645.1|Name=mRNA_H-elongata_contig177062.4645.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=455bp|location=Sequence derived from alignment at H-elongata_contig177062:486..940+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig177062:486..940+ >mRNA_H-elongata_contig177062.4645.1 ID=mRNA_H-elongata_contig177062.4645.1|Name=mRNA_H-elongata_contig177062.4645.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=762bp|location=Sequence derived from alignment at H-elongata_contig177062:486..940+ (Himanthalia elongata Himel1 dioecious)back to top |