mRNA_H-elongata_contig177062.4645.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig177062.4645.1
Unique NamemRNA_H-elongata_contig177062.4645.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig177062.4645.1 vs. uniprot
Match: A0A6H5LMZ3_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LMZ3_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 6.350e-10
Identity = 55/161 (34.16%), Postives = 81/161 (50.31%), Query Frame = -1
Query:    3 HCGGRGHSGDKGCATMNADVVFAMSANEESDHDGSDCSAFISTH-LPNGGKCDQSKEFERFAVLGGKVGDER-------WVCDTGASQHFSNDSAHMLDFRECQKFMRTASGKRFPIE--GHGDLILHFRSEGEVVHLKLCNVAYVPQLPHNLLSLRAVAD 455
            HC   GHS DK CAT  A  + A   + +SD D  D  AF +   LP  G+C         AV  G VG          +V  T A+      +   +++REC  +++   G + P+   G+GD+ + F +EG  V + + N A+VP+ PHNLLSL A+A+
Sbjct:  109 HCAEWGHSKDK-CATEEA--ILAQIVHADSDADSVDNQAFCAAPGLP--GECG--------AVDLGLVGVTELGQDIMVYVAHTAATCSMIRCANAFVNYRECSGWVKGIGGNKAPVPLLGYGDVTVVFLTEGGRVPVLILNAAHVPESPHNLLSLSALAE 256          
BLAST of mRNA_H-elongata_contig177062.4645.1 vs. uniprot
Match: A0A6G0X3B5_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X3B5_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 2.390e-8
Identity = 30/80 (37.50%), Postives = 45/80 (56.25%), Query Frame = -1
Query:    3 WVCDTGASQHFSNDSAHMLDFRECQKFMRTASGKRFPIEGHGDLILHFRSEGEVVHLKLCNVAYVPQLPHNLLSLRAVAD 242
            WV D+GAS HF N+S+   +       +R A+G    IEG G + L   +   +V ++L NV+Y+P L +NL SL  V+ 
Sbjct:  297 WVIDSGASDHFCNNSSWFTNLEPSTGVVRAANGGDMAIEGCGSIHLEMNTPSGIVEVELQNVSYMPSLQYNLFSLSRVSQ 376          
BLAST of mRNA_H-elongata_contig177062.4645.1 vs. uniprot
Match: A0A6H5JRY9_9PHAE (CCHC-type domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRY9_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 1.680e-7
Identity = 46/143 (32.17%), Postives = 72/143 (50.35%), Query Frame = -1
Query:    3 DVVFAMSANEESDHDGSDCSAFISTH-LPNGGKCDQSKEFERFAVLGGKVGDER-------WVCDTGASQHFSNDSAHMLDFRECQKFMRTASGKRFPIE--GHGDLILHFRSEGEVVHLKLCNVAYVPQLPHNLLSLRAVAD 401
            + V A   + +SD D  D  AF +   LP  G+C         AV  G VG          +V DT A+      +   +++REC  +++   G + P+   G+GD+ + F +EG  V + + N A+VP+ PHNLLSL A+A+
Sbjct:  476 EAVLAQIVHADSDADSVDNQAFCAAPGLP--GECG--------AVDLGLVGVTELGQDVMVYVADTAATCSMFRCANAFVNYRECSGWVKAIGGNKAPVPLLGYGDVTVVFLTEGGRVPVLILNAAHVPESPHNLLSLSALAE 608          
BLAST of mRNA_H-elongata_contig177062.4645.1 vs. uniprot
Match: A0A6H5L6M8_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6M8_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 6.680e-7
Identity = 46/143 (32.17%), Postives = 72/143 (50.35%), Query Frame = -1
Query:    3 DVVFAMSANEESDHDGSDCSAFISTH-LPNGGKCDQSKEFERFAVLGGKVGDER-------WVCDTGASQHFSNDSAHMLDFRECQKFMRTASGKR--FPIEGHGDLILHFRSEGEVVHLKLCNVAYVPQLPHNLLSLRAVAD 401
            + V A   + +SD D  D  AF +   LP  G+C         AV  G VG          +V DT A+      +   +++REC  +++   G +   P+ G+GD+ + F +EG  V + + N A+VP+ PHNLLSL A+A+
Sbjct:  305 EAVLAQIVHADSDADSVDNQAFCAAPGLP--GECG--------AVDLGLVGVTELGQDVMVYVADTAATCSMFRCANAFVNYRECSGWVKGIRGNKALVPLLGYGDVTVVFLTEGGRVPVLILNAAHVPESPHNLLSLSALAE 437          
BLAST of mRNA_H-elongata_contig177062.4645.1 vs. uniprot
Match: A0A6H5K8M7_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8M7_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 2.530e-6
Identity = 45/143 (31.47%), Postives = 71/143 (49.65%), Query Frame = -1
Query:    3 DVVFAMSANEESDHDGSDCSAFISTH-LPNGGKCDQSKEFERFAVLGGKVGDER-------WVCDTGASQHFSNDSAHMLDFRECQKFMRTASGKRFPIE--GHGDLILHFRSEGEVVHLKLCNVAYVPQLPHNLLSLRAVAD 401
            + V A   + +SD D  D  AF +   LP  G+C         AV  G VG          +V  T A+      +   +++REC  +++   G + P+   G+GD+ + F +EG  V + + N A+VP+ PHNLLSL A+A+
Sbjct:  477 EAVLAQIVHADSDADSVDNQAFCAAPGLP--GECG--------AVDLGLVGVTELGQDVMVYVAGTAATCSMFRCANAFVNYRECSGWVKGIGGNKAPVPLLGYGDVTVVFLTEGGRVPVLILNAAHVPESPHNLLSLSALAE 609          
BLAST of mRNA_H-elongata_contig177062.4645.1 vs. uniprot
Match: A0A6H5JUG1_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUG1_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 6.000e-6
Identity = 29/82 (35.37%), Postives = 49/82 (59.76%), Query Frame = -1
Query:    3 WVCDTGASQHFSNDSAHMLDFRECQKFMRTASGKRFPIE--GHGDLILHFRSEGEVVHLKLCNVAYVPQLPHNLLSLRAVAD 242
            +V DT A+      +   +++RE   +++   G + P+   G+GDL + F +EG  V + + N A+VP+ PHNLLSL A+A+
Sbjct:  429 YVADTAATCSMFRCANAFVNYRERSGWVKGIGGNKAPVPLLGYGDLTVVFLTEGGRVPVLILNAAHVPESPHNLLSLSALAE 510          
BLAST of mRNA_H-elongata_contig177062.4645.1 vs. uniprot
Match: A0A6H5JK64_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK64_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 1.210e-5
Identity = 44/143 (30.77%), Postives = 70/143 (48.95%), Query Frame = -1
Query:    3 DVVFAMSANEESDHDGSDCSAFISTH-LPNGGKCDQSKEFERFAVLGGKVGDER-------WVCDTGASQHFSNDSAHMLDFRECQKFMRTASGKR--FPIEGHGDLILHFRSEGEVVHLKLCNVAYVPQLPHNLLSLRAVAD 401
            + V A   + +SD D  D  AF +   LP  G+C         AV  G VG          +V DT A+      +   +++REC  +++   G +   P+ G+ D+ + F +EG    + + N A+VP+ PHNLLSL A+A+
Sbjct:  205 EAVLAQIVHADSDADSVDNQAFCAAPGLP--GECG--------AVDLGLVGVTELGQDVMVYVADTAATCSMFRCANAFVNYRECSSWVKGIGGNKASVPLLGYVDVTVVFLTEGGKAPVLILNAAHVPESPHNLLSLSALAE 337          
BLAST of mRNA_H-elongata_contig177062.4645.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 2.610e-5
Identity = 25/64 (39.06%), Postives = 42/64 (65.62%), Query Frame = -1
Query:    3 LDFRECQKFMRTASGKRFPIE--GHGDLILHFRSEGEVVHLKLCNVAYVPQLPHNLLSLRAVAD 188
            +++REC  +++   G   P+   G+GD+ + F +EG  V + + N A+VP+ PHNLLSL A+A+
Sbjct:    9 VNYRECSGWVKGIGGNNAPVPPLGYGDVTVVFLTEGGRVPVLILNAAHVPESPHNLLSLSALAE 72          
BLAST of mRNA_H-elongata_contig177062.4645.1 vs. uniprot
Match: A0A6H5KNB1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNB1_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 3.810e-5
Identity = 26/82 (31.71%), Postives = 48/82 (58.54%), Query Frame = -1
Query:    3 WVCDTGASQHFSNDSAHMLDFRECQKFMRTASGKRFPIE--GHGDLILHFRSEGEVVHLKLCNVAYVPQLPHNLLSLRAVAD 242
            ++ DT A+      +   +++REC  +++   G + P+   G+GD+ +   + G  V + + N A+VP+ PHNLLSL A+A+
Sbjct:    3 YLADTAATCSMFRCANAFVNYRECSGWVKEIGGNKAPVPLLGYGDVTVILLTVGGRVPVLILNAAHVPESPHNLLSLSALAE 84          
BLAST of mRNA_H-elongata_contig177062.4645.1 vs. uniprot
Match: A0A8H8NUS4_9AGAM (Integrase core domain protein n=2 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H8NUS4_9AGAM)

HSP 1 Score: 52.4 bits (124), Expect = 5.770e-5
Identity = 28/85 (32.94%), Postives = 45/85 (52.94%), Query Frame = -1
Query:    3 ERWVCDTGASQHFSNDSAHMLDFRECQKFMRTASGKRFPIEGHGD---LILHFRSEGEVVHLKLCNVAYVPQLPHNLLSLRAVAD 248
            + W+ D+G + H + D     ++ +   ++   +GK  PI G G    L L+   + E   ++L NVA+VP LP NL+SL  V D
Sbjct:  346 DTWIADSGTTTHIAIDRNAFSNYTKSSGYVAGVTGKE-PIMGRGTVELLCLNNTEKNEYTKIRLTNVAHVPSLPANLISLSLVTD 429          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig177062.4645.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5LMZ3_9PHAE6.350e-1034.16SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6G0X3B5_9STRA2.390e-837.50Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JRY9_9PHAE1.680e-732.17CCHC-type domain-containing protein n=4 Tax=Ectoca... [more]
A0A6H5L6M8_9PHAE6.680e-732.17CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K8M7_9PHAE2.530e-631.47CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JUG1_9PHAE6.000e-635.37CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A6H5JK64_9PHAE1.210e-530.77CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A6H5LL52_9PHAE2.610e-539.06Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KNB1_9PHAE3.810e-531.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8H8NUS4_9AGAM5.770e-532.94Integrase core domain protein n=2 Tax=Rhizoctonia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig177062contigH-elongata_contig177062:486..940 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size456
Cds size381
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930024.589237-UTR-H-elongata_contig177062:485..5591622930024.589237-UTR-H-elongata_contig177062:485..559Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig177062 486..559 +
1691679250.9826503-UTR-H-elongata_contig177062:485..5591691679250.9826503-UTR-H-elongata_contig177062:485..559Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig177062 486..559 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930024.6024718-CDS-H-elongata_contig177062:559..9401622930024.6024718-CDS-H-elongata_contig177062:559..940Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig177062 560..940 +
1691679250.9966862-CDS-H-elongata_contig177062:559..9401691679250.9966862-CDS-H-elongata_contig177062:559..940Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig177062 560..940 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig177062.4645.1prot_H-elongata_contig177062.4645.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig177062 560..940 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig177062.4645.1

>prot_H-elongata_contig177062.4645.1 ID=prot_H-elongata_contig177062.4645.1|Name=mRNA_H-elongata_contig177062.4645.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bp
MYHLSLRPKVQDKVTVTLDRESLPASRPHKLLAFTEIEHVRRVIAKMLRS
AGVTHPTLVPNLTTQNRKTLKLFRLITLASIWQVSGDEGAAVRAIVVRFF
VRAHGEDDICIHGCAALVPRVSSTATM
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mRNA from alignment at H-elongata_contig177062:486..940+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig177062.4645.1 ID=mRNA_H-elongata_contig177062.4645.1|Name=mRNA_H-elongata_contig177062.4645.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=455bp|location=Sequence derived from alignment at H-elongata_contig177062:486..940+ (Himanthalia elongata Himel1 dioecious)
CTGTCGGCTACTGCTCTTAGTGATAACAGATTGTGAGGGAGTTGTGGCAC ATATGCTACGTTGCAAAGCTTGAGATGTACCACCTCTCCCTCAGACCGAA AGTGCAAGATAAGGTCACCGTGACCCTCGATCGGGAATCTCTTCCCGCTA GCCGTCCGCATAAACTTTTGGCATTCACGGAAATCGAGCATGTGCGCAGA GTCATTGCTAAAATGCTGCGAAGCGCCGGTGTCACACACCCAACGCTCGT CCCCAACCTTACCACCCAAAACCGCAAAACGCTCAAACTCTTTCGACTGA TCACACTTGCCTCCATTTGGCAGGTGAGTGGAGATGAAGGCGCTGCAGTC CGAGCCATCGTGGTCCGATTCTTCGTTCGCGCTCATGGCGAAGACGACAT CTGCATTCATGGTTGCGCAGCCCTTGTCCCCCGAGTGTCCTCGACCGCCA CAATG
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Coding sequence (CDS) from alignment at H-elongata_contig177062:486..940+

>mRNA_H-elongata_contig177062.4645.1 ID=mRNA_H-elongata_contig177062.4645.1|Name=mRNA_H-elongata_contig177062.4645.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=762bp|location=Sequence derived from alignment at H-elongata_contig177062:486..940+ (Himanthalia elongata Himel1 dioecious)
ATGTACCACCTCTCCCTCAGACCGAAAGTGCAAGATAAGGTCACCGTGAC
CCTCGATCGGGAATCTCTTCCCGCTAGCCGTCCGCATAAACTTTTGGCAT
TCACGGAAATCGAGCATGTGCGCAGAGTCATTGCTAAAATGCTGCGAAGC
GCCGGTGTCACACACCCAACGCTCGTCCCCAACCTTACCACCCAAAACCG
CAAAACGCTCAAACTCTTTCGACTGATCACACTTGCCTCCATTTGGCAGG
TGAGTGGAGATGAAGGCGCTGCAGTCCGAGCCATCGTGGTCCGATTCTTC
GTTCGCGCTCATGGCGAAGACGACATCTGCATTCATGGTTGCGCAGCCCT
TGTCCCCCGAGTGTCCTCGACCGCCACAATGATGTACCACCTCTCCCTCA
GACCGAAAGTGCAAGATAAGGTCACCGTGACCCTCGATCGGGAATCTCTT
CCCGCTAGCCGTCCGCATAAACTTTTGGCATTCACGGAAATCGAGCATGT
GCGCAGAGTCATTGCTAAAATGCTGCGAAGCGCCGGTGTCACACACCCAA
CGCTCGTCCCCAACCTTACCACCCAAAACCGCAAAACGCTCAAACTCTTT
CGACTGATCACACTTGCCTCCATTTGGCAGGTGAGTGGAGATGAAGGCGC
TGCAGTCCGAGCCATCGTGGTCCGATTCTTCGTTCGCGCTCATGGCGAAG
ACGACATCTGCATTCATGGTTGCGCAGCCCTTGTCCCCCGAGTGTCCTCG
ACCGCCACAATG
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