prot_H-elongata_contig17698.4641.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig17698.4641.1
Unique Nameprot_H-elongata_contig17698.4641.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length40
Homology
BLAST of mRNA_H-elongata_contig17698.4641.1 vs. uniprot
Match: D8LRR0_ECTSI (Small nuclear ribonucleoprotein G n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRR0_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 2.400e-17
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = 0
Query:    1 MNLVLDDATDPASSDKRMGMVIIRGNSVVQFEILDPLRF 39
            MNLVLD+ TDPASSDK+MGMVIIRGNSVVQFEILDPLRF
Sbjct:   37 MNLVLDETTDPASSDKKMGMVIIRGNSVVQFEILDPLRF 75          
BLAST of mRNA_H-elongata_contig17698.4641.1 vs. uniprot
Match: A0A835YWI2_9STRA (Small nuclear ribonucleoprotein G n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWI2_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 8.320e-7
Identity = 22/40 (55.00%), Postives = 36/40 (90.00%), Query Frame = 0
Query:    1 MNLVLDDATD-PASSDKRM-GMVIIRGNSVVQFEILDPLR 38
            MN+VLD+A + P+ +++R+ GMV+IRGNSV++FE+LDP++
Sbjct:   38 MNIVLDEAVEVPSKAEERLIGMVVIRGNSVIRFEVLDPVQ 77          
BLAST of mRNA_H-elongata_contig17698.4641.1 vs. uniprot
Match: A0A4D9CNZ1_9STRA (Small nuclear ribonucleoprotein G n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CNZ1_9STRA)

HSP 1 Score: 46.2 bits (108), Expect = 1.810e-5
Identity = 22/38 (57.89%), Postives = 29/38 (76.32%), Query Frame = 0
Query:    1 MNLVLDDATDPASSDKR-MGMVIIRGNSVVQFEILDPL 37
            MN+VLD+  D  + DK  +G+V+IRGNSVVQFE L+ L
Sbjct:   38 MNIVLDETVDDGAPDKNDIGLVVIRGNSVVQFECLEKL 75          
BLAST of mRNA_H-elongata_contig17698.4641.1 vs. uniprot
Match: W7TL56_9STRA (Small nuclear ribonucleoprotein G n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TL56_9STRA)

HSP 1 Score: 46.2 bits (108), Expect = 2.400e-5
Identity = 22/38 (57.89%), Postives = 29/38 (76.32%), Query Frame = 0
Query:    1 MNLVLDDATDPASSDKR-MGMVIIRGNSVVQFEILDPL 37
            MN+VLD+  D  + DK  +G+V+IRGNSVVQFE L+ L
Sbjct:   51 MNIVLDETVDDGAPDKNDIGLVVIRGNSVVQFECLEKL 88          
BLAST of mRNA_H-elongata_contig17698.4641.1 vs. uniprot
Match: A4S6B0_OSTLU (Small nuclear ribonucleoprotein G n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S6B0_OSTLU)

HSP 1 Score: 44.3 bits (103), Expect = 9.760e-5
Identity = 20/38 (52.63%), Postives = 30/38 (78.95%), Query Frame = 0
Query:    1 MNLVLDDATDPASSDKR-MGMVIIRGNSVVQFEILDPL 37
            +N+VLDDAT+  +S+K  MGM+++RGNSVV  E L+ +
Sbjct:   26 LNVVLDDATNDTTSEKTPMGMIVVRGNSVVSMEALEHI 63          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17698.4641.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LRR0_ECTSI2.400e-1792.31Small nuclear ribonucleoprotein G n=1 Tax=Ectocarp... [more]
A0A835YWI2_9STRA8.320e-755.00Small nuclear ribonucleoprotein G n=1 Tax=Tribonem... [more]
A0A4D9CNZ1_9STRA1.810e-557.89Small nuclear ribonucleoprotein G n=1 Tax=Nannochl... [more]
W7TL56_9STRA2.400e-557.89Small nuclear ribonucleoprotein G n=1 Tax=Nannochl... [more]
A4S6B0_OSTLU9.760e-552.63Small nuclear ribonucleoprotein G n=1 Tax=Ostreoco... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 1..31
e-value: 2.4E-6
score: 27.1
NoneNo IPR availableGENE3D2.30.30.100coord: 1..37
e-value: 3.1E-6
score: 28.8
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 1..37

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17698contigH-elongata_contig17698:937..1056 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17698.4641.1mRNA_H-elongata_contig17698.4641.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig17698 910..1056 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig17698.4641.1 ID=prot_H-elongata_contig17698.4641.1|Name=mRNA_H-elongata_contig17698.4641.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=40bp
MNLVLDDATDPASSDKRMGMVIIRGNSVVQFEILDPLRF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR010920LSM_dom_sf