mRNA_H-elongata_contig176823.4636.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig176823.4636.1
Unique NamemRNA_H-elongata_contig176823.4636.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig176823.4636.1 vs. uniprot
Match: D7FZW2_ECTSI (Dicer-like 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW2_ECTSI)

HSP 1 Score: 164 bits (415), Expect = 4.060e-45
Identity = 73/89 (82.02%), Postives = 80/89 (89.89%), Query Frame = 1
Query:    1 LSVGPYVGKDLDYWGLKKWRDEMDTKEVLVMTPNALLNLLHRGKEYLSLADVGVLVFDECHQARKKHPYARVMTFYMELQDQGGPLPKV 267
            +  GPYVGKDLDYWG+KKW++EMD KEVLVMTPNALLNLLHRG EYLSL DVGVLVFDECH+ARKKHPYARVM FY+EL+   GPLPKV
Sbjct:   79 VRCGPYVGKDLDYWGVKKWKEEMDNKEVLVMTPNALLNLLHRGNEYLSLKDVGVLVFDECHKARKKHPYARVMAFYLELRKNRGPLPKV 167          
BLAST of mRNA_H-elongata_contig176823.4636.1 vs. uniprot
Match: A0A6H5KS87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS87_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 1.130e-29
Identity = 55/65 (84.62%), Postives = 59/65 (90.77%), Query Frame = 1
Query:   73 TKEVLVMTPNALLNLLHRGKEYLSLADVGVLVFDECHQARKKHPYARVMTFYMELQDQGGPLPKV 267
            TKEVLVMTPNALLNLLHRG EYLSL DVGVLVFDECH+ARKKHPYARVM FY++L+   GPLPKV
Sbjct:  354 TKEVLVMTPNALLNLLHRGNEYLSLKDVGVLVFDECHKARKKHPYARVMAFYLDLRKNKGPLPKV 418          
BLAST of mRNA_H-elongata_contig176823.4636.1 vs. uniprot
Match: A0A835Z6Y5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6Y5_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.090e-20
Identity = 43/86 (50.00%), Postives = 56/86 (65.12%), Query Frame = 1
Query:    1 LSVGPYVGKDLDYWGLKKWRDEMDTKEVLVMTPNALLNLLHRGKEYLSLADVGVLVFDECHQARKKHPYARVMTFYMELQDQGGPL 258
            L+   +VG++LD W    W+      +VLVMTP ++LNLL  GK YL L DVGV++ DECH ARKKHPYA++M  Y+ L     PL
Sbjct:  103 LATQSFVGRELDDWTAPDWQRHFRQTDVLVMTPGSMLNLLIHGKAYLDLEDVGVIIMDECHCARKKHPYAQIMARYVALPLDKRPL 188          
BLAST of mRNA_H-elongata_contig176823.4636.1 vs. uniprot
Match: UPI000D627B4A (endoribonuclease Dicer homolog 2-like n=1 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=UPI000D627B4A)

HSP 1 Score: 84.7 bits (208), Expect = 3.100e-18
Identity = 42/93 (45.16%), Postives = 59/93 (63.44%), Query Frame = 1
Query:    1 LSVGPYVGK-DLDYWGLKKWRDEMDTKEVLVMTPNALLNLLHRGKEYLSLADVGVLVFDECHQARKKHPYARVMT--FYMELQDQGGPLPKVL 270
            L V  Y G+  +DYW    W+ + D  E+LVMTP  LL+ L    ++LSL  + VL+FDECH A+K+HPYA +MT  ++ EL   G  LP++L
Sbjct:   92 LKVEEYCGEIGVDYWNAANWKKQQDENELLVMTPAILLDALRH--KFLSLDIIKVLIFDECHNAKKRHPYALIMTEFYHRELHLGGSQLPRIL 182          
BLAST of mRNA_H-elongata_contig176823.4636.1 vs. uniprot
Match: A0A6I9TTT5_SESIN (endoribonuclease Dicer homolog 2 isoform X1 n=2 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9TTT5_SESIN)

HSP 1 Score: 86.7 bits (213), Expect = 7.500e-18
Identity = 48/93 (51.61%), Postives = 58/93 (62.37%), Query Frame = 1
Query:    1 LSVGPYVGK-DLDYWGLKKWRDEMDTKEVLVMTPNALLNLL-HRGKEYLSLADVGVLVFDECHQARKKHPYARVMT--FYMELQDQGGPLPKV 267
            L VG Y G+  +DYW    W+DE +  EVLVMTP  LLN L HR   +L L  V VL+FDECH AR KHPYA +MT  ++ EL      LP+V
Sbjct:   94 LKVGKYYGEMGVDYWDAATWKDEKEKHEVLVMTPQILLNALRHR---FLRLDHVKVLIFDECHNARGKHPYACIMTEFYHRELASSTLQLPRV 183          
BLAST of mRNA_H-elongata_contig176823.4636.1 vs. uniprot
Match: UPI000D630596 (LOW QUALITY PROTEIN: endoribonuclease Dicer homolog 2 n=1 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=UPI000D630596)

HSP 1 Score: 85.1 bits (209), Expect = 2.610e-17
Identity = 43/93 (46.24%), Postives = 59/93 (63.44%), Query Frame = 1
Query:    1 LSVGPYVG-KDLDYWGLKKWRDEMDTKEVLVMTPNALLNLLHRGKEYLSLADVGVLVFDECHQARKKHPYARVMT--FYMELQDQGGPLPKVL 270
            L V  Y G K +DYW    W+ + D  E+LVMTP  LL+ L    ++LSL  + VL+FDECH A+K+HPYA +MT  ++ EL   G  LP++L
Sbjct:   92 LKVEEYWGEKGVDYWNAADWKKQQDENELLVMTPAILLDALRH--KFLSLDIIKVLIFDECHNAKKRHPYALIMTEFYHRELHLGGSQLPRIL 182          
BLAST of mRNA_H-elongata_contig176823.4636.1 vs. uniprot
Match: A0A1R3JY25_COCAP (Uncharacterized protein n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3JY25_COCAP)

HSP 1 Score: 84.7 bits (208), Expect = 3.560e-17
Identity = 44/93 (47.31%), Postives = 58/93 (62.37%), Query Frame = 1
Query:    1 LSVGPYVGK-DLDYWGLKKWRDEMDTKEVLVMTPNALLNLLHRGKEYLSLADVGVLVFDECHQARKKHPYARVMTFYMELQDQGGP--LPKVL 270
            L VG Y G  D+D+W   KW+ E++  EVLVMTP  LLN L      ++L  + VL+FDECH AR KHPYA +MT +   Q + G   LP++L
Sbjct:   94 LKVGKYWGDMDVDFWDSAKWKQEIEKYEVLVMTPQILLNCLRHSFFKINL--IQVLIFDECHHARGKHPYASIMTEFYHQQLKAGESNLPRIL 184          
BLAST of mRNA_H-elongata_contig176823.4636.1 vs. uniprot
Match: A0A3Q0EUT1_VIGRR (endoribonuclease Dicer homolog 2 isoform X1 n=5 Tax=Vigna TaxID=3913 RepID=A0A3Q0EUT1_VIGRR)

HSP 1 Score: 84.7 bits (208), Expect = 3.560e-17
Identity = 42/92 (45.65%), Postives = 56/92 (60.87%), Query Frame = 1
Query:    1 LSVGPYVG-KDLDYWGLKKWRDEMDTKEVLVMTPNALLNLLHRGKEYLSLADVGVLVFDECHQARKKHPYARVMT--FYMELQDQGGPLPKV 267
            L VG Y G K +D+W    W+ EMD  EVL+MTP  LLN L     +L L  + VL+ DECH AR +HPYAR+MT  ++ +L      LP++
Sbjct:  128 LKVGVYWGEKGVDFWDAATWKQEMDKHEVLIMTPVILLNCLRHS--FLKLNMIKVLIMDECHHARGRHPYARIMTEFYHHQLHSGSSDLPRI 217          
BLAST of mRNA_H-elongata_contig176823.4636.1 vs. uniprot
Match: A0A2Z7AYE5_9LAMI (Endoribonuclease Dicer2 n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7AYE5_9LAMI)

HSP 1 Score: 84.0 bits (206), Expect = 6.630e-17
Identity = 42/92 (45.65%), Postives = 56/92 (60.87%), Query Frame = 1
Query:    1 LSVGPYVGK-DLDYWGLKKWRDEMDTKEVLVMTPNALLNLLHRGKEYLSLADVGVLVFDECHQARKKHPYARVMT--FYMELQDQGGPLPKV 267
            L VG Y G+  +DYW    W+ + D  EVLVMTP  LL+ L     +L L  + +L+FDECH AR KHPYAR+M   ++ EL  +   LP+V
Sbjct:   97 LKVGKYYGELGVDYWDAATWKVQKDENEVLVMTPQILLDALRHS--FLKLNQIKILIFDECHNARGKHPYARIMMEFYHRELSSKNLLLPRV 186          
BLAST of mRNA_H-elongata_contig176823.4636.1 vs. uniprot
Match: A0A830BRC5_9LAMI (Endoribonuclease dicer homolog 2 n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830BRC5_9LAMI)

HSP 1 Score: 84.0 bits (206), Expect = 6.630e-17
Identity = 45/93 (48.39%), Postives = 59/93 (63.44%), Query Frame = 1
Query:    1 LSVGPYVGK-DLDYWGLKKWRDEMDTKEVLVMTPNALLNLL-HRGKEYLSLADVGVLVFDECHQARKKHPYARVMT--FYMELQDQGGPLPKV 267
            L VG Y G+  +DYW  + W+D+++  EVLVMTP  LLN L HR   +L L  + VL+FDECH AR KH YA +MT  ++ EL      LP+V
Sbjct:   95 LKVGKYYGEMGVDYWDAEIWKDQVELHEVLVMTPQILLNALRHR---FLRLDQIKVLIFDECHNARGKHSYACIMTEFYHRELASNNLKLPRV 184          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig176823.4636.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZW2_ECTSI4.060e-4582.02Dicer-like 3 n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A6H5KS87_9PHAE1.130e-2984.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z6Y5_9STRA1.090e-2050.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
UPI000D627B4A3.100e-1845.16endoribonuclease Dicer homolog 2-like n=1 Tax=Cyna... [more]
A0A6I9TTT5_SESIN7.500e-1851.61endoribonuclease Dicer homolog 2 isoform X1 n=2 Ta... [more]
UPI000D6305962.610e-1746.24LOW QUALITY PROTEIN: endoribonuclease Dicer homolo... [more]
A0A1R3JY25_COCAP3.560e-1747.31Uncharacterized protein n=1 Tax=Corchorus capsular... [more]
A0A3Q0EUT1_VIGRR3.560e-1745.65endoribonuclease Dicer homolog 2 isoform X1 n=5 Ta... [more]
A0A2Z7AYE5_9LAMI6.630e-1745.65Endoribonuclease Dicer2 n=1 Tax=Dorcoceras hygrome... [more]
A0A830BRC5_9LAMI6.630e-1748.39Endoribonuclease dicer homolog 2 n=1 Tax=Phtheiros... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig176823contigH-elongata_contig176823:4..589 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.0
Seed ortholog evalue8.1e-39
Seed eggNOG ortholog2880.D7FZW2
KEGG koko:K11592
KEGG Pathwayko05206,map05206
EggNOG free text desc.ribonuclease III activity
EggNOG OGsCOG0571@1,KOG0701@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size273
Cds size273
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930023.260024-CDS-H-elongata_contig176823:3..2021622930023.260024-CDS-H-elongata_contig176823:3..202Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig176823 4..202 -
1691679250.2492456-CDS-H-elongata_contig176823:3..2021691679250.2492456-CDS-H-elongata_contig176823:3..202Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig176823 4..202 -
1622930023.2807403-CDS-H-elongata_contig176823:515..5891622930023.2807403-CDS-H-elongata_contig176823:515..589Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig176823 516..589 -
1691679250.2666223-CDS-H-elongata_contig176823:515..5891691679250.2666223-CDS-H-elongata_contig176823:515..589Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig176823 516..589 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig176823.4636.1prot_H-elongata_contig176823.4636.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig176823 4..589 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig176823.4636.1

>prot_H-elongata_contig176823.4636.1 ID=prot_H-elongata_contig176823.4636.1|Name=mRNA_H-elongata_contig176823.4636.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
LSVGPYVGKDLDYWGLKKWRDEMDTKEVLVMTPNALLNLLHRGKEYLSLA
DVGVLVFDECHQARKKHPYARVMTFYMELQDQGGPLPKVL*
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mRNA from alignment at H-elongata_contig176823:4..589-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig176823.4636.1 ID=mRNA_H-elongata_contig176823.4636.1|Name=mRNA_H-elongata_contig176823.4636.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=586bp|location=Sequence derived from alignment at H-elongata_contig176823:4..589- (Himanthalia elongata Himel1 dioecious)
TTATCTGTAGGCCCATATGTCGGCAAAGATCTAGACTACTGGGGACTAAA GAAGTGGCGGGATGAGATGGACACGTGAGTTGCGCAGCGTACACGAGTGA TGGACTAACGAGACGGAGAAGGATAGCGTTAGTGCACTTTTTACCATAAT TTTTATTATTGTTGCCAGCGCTGTGGGACTCAGGCACGCCTTCCACTTCC ATAGTAATATACAGTGTCATTCGAACCTGACGATAGTTGGTCCTCTCTGG ACTGCACCTCTCACGGCGCTAAGAATGTGTGGATGTTCGGAGGGTTGGGA TGAGTTCAAGTTTTTTTTTAATTATTTATTTTTGATTTTTTTTTTTTTCG TTTTTCTCTCCTTGCTTTGACTCTGAATGTTTCGCAGCAAAGAAGTGCTG GTGATGACACCAAACGCCCTGCTAAACCTGCTTCACCGAGGAAAGGAATA TCTATCCCTGGCAGATGTTGGAGTGTTGGTGTTCGATGAGTGCCACCAGG CGCGGAAAAAGCATCCCTATGCCAGAGTAATGACCTTTTACATGGAACTC CAGGATCAAGGCGGGCCCCTCCCTAAGGTACTGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig176823:4..589-

>mRNA_H-elongata_contig176823.4636.1 ID=mRNA_H-elongata_contig176823.4636.1|Name=mRNA_H-elongata_contig176823.4636.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig176823:4..589- (Himanthalia elongata Himel1 dioecious)
TTATCTGTAGGCCCATATGTCGGCAAAGATCTAGACTACTGGGGACTAAA
GAAGTGGCGGGATGAGATGGACACTTATCTGTAGGCCCATATGTCGGCAA
AGATCTAGACTACTGGGGACTAAAGAAGTGGCGGGATGAGATGGACACCA
AAGAAGTGCTGGTGATGACACCAAACGCCCTGCTAAACCTGCTTCACCGA
GGAAAGGAATATCTATCCCTGGCAGATGTTGGAGTGTTGGTGTTCGATGA
GTGCCACCAGGCGCGGAAAAAGCATCCCTATGCCAGAGTAATGACCTTTT
ACATGGAACTCCAGGATCAAGGCGGGCCCCTCCCTAAGGTACTGTAACAA
AGAAGTGCTGGTGATGACACCAAACGCCCTGCTAAACCTGCTTCACCGAG
GAAAGGAATATCTATCCCTGGCAGATGTTGGAGTGTTGGTGTTCGATGAG
TGCCACCAGGCGCGGAAAAAGCATCCCTATGCCAGAGTAATGACCTTTTA
CATGGAACTCCAGGATCAAGGCGGGCCCCTCCCTAAGGTACTGTAA
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