mRNA_H-elongata_contig176823.4636.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig176823.4636.1 vs. uniprot
Match: D7FZW2_ECTSI (Dicer-like 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW2_ECTSI) HSP 1 Score: 164 bits (415), Expect = 4.060e-45 Identity = 73/89 (82.02%), Postives = 80/89 (89.89%), Query Frame = 1
Query: 1 LSVGPYVGKDLDYWGLKKWRDEMDTKEVLVMTPNALLNLLHRGKEYLSLADVGVLVFDECHQARKKHPYARVMTFYMELQDQGGPLPKV 267
+ GPYVGKDLDYWG+KKW++EMD KEVLVMTPNALLNLLHRG EYLSL DVGVLVFDECH+ARKKHPYARVM FY+EL+ GPLPKV
Sbjct: 79 VRCGPYVGKDLDYWGVKKWKEEMDNKEVLVMTPNALLNLLHRGNEYLSLKDVGVLVFDECHKARKKHPYARVMAFYLELRKNRGPLPKV 167
BLAST of mRNA_H-elongata_contig176823.4636.1 vs. uniprot
Match: A0A6H5KS87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS87_9PHAE) HSP 1 Score: 119 bits (297), Expect = 1.130e-29 Identity = 55/65 (84.62%), Postives = 59/65 (90.77%), Query Frame = 1
Query: 73 TKEVLVMTPNALLNLLHRGKEYLSLADVGVLVFDECHQARKKHPYARVMTFYMELQDQGGPLPKV 267
TKEVLVMTPNALLNLLHRG EYLSL DVGVLVFDECH+ARKKHPYARVM FY++L+ GPLPKV
Sbjct: 354 TKEVLVMTPNALLNLLHRGNEYLSLKDVGVLVFDECHKARKKHPYARVMAFYLDLRKNKGPLPKV 418
BLAST of mRNA_H-elongata_contig176823.4636.1 vs. uniprot
Match: A0A835Z6Y5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6Y5_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 1.090e-20 Identity = 43/86 (50.00%), Postives = 56/86 (65.12%), Query Frame = 1
Query: 1 LSVGPYVGKDLDYWGLKKWRDEMDTKEVLVMTPNALLNLLHRGKEYLSLADVGVLVFDECHQARKKHPYARVMTFYMELQDQGGPL 258
L+ +VG++LD W W+ +VLVMTP ++LNLL GK YL L DVGV++ DECH ARKKHPYA++M Y+ L PL
Sbjct: 103 LATQSFVGRELDDWTAPDWQRHFRQTDVLVMTPGSMLNLLIHGKAYLDLEDVGVIIMDECHCARKKHPYAQIMARYVALPLDKRPL 188
BLAST of mRNA_H-elongata_contig176823.4636.1 vs. uniprot
Match: UPI000D627B4A (endoribonuclease Dicer homolog 2-like n=1 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=UPI000D627B4A) HSP 1 Score: 84.7 bits (208), Expect = 3.100e-18 Identity = 42/93 (45.16%), Postives = 59/93 (63.44%), Query Frame = 1
Query: 1 LSVGPYVGK-DLDYWGLKKWRDEMDTKEVLVMTPNALLNLLHRGKEYLSLADVGVLVFDECHQARKKHPYARVMT--FYMELQDQGGPLPKVL 270
L V Y G+ +DYW W+ + D E+LVMTP LL+ L ++LSL + VL+FDECH A+K+HPYA +MT ++ EL G LP++L
Sbjct: 92 LKVEEYCGEIGVDYWNAANWKKQQDENELLVMTPAILLDALRH--KFLSLDIIKVLIFDECHNAKKRHPYALIMTEFYHRELHLGGSQLPRIL 182
BLAST of mRNA_H-elongata_contig176823.4636.1 vs. uniprot
Match: A0A6I9TTT5_SESIN (endoribonuclease Dicer homolog 2 isoform X1 n=2 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9TTT5_SESIN) HSP 1 Score: 86.7 bits (213), Expect = 7.500e-18 Identity = 48/93 (51.61%), Postives = 58/93 (62.37%), Query Frame = 1
Query: 1 LSVGPYVGK-DLDYWGLKKWRDEMDTKEVLVMTPNALLNLL-HRGKEYLSLADVGVLVFDECHQARKKHPYARVMT--FYMELQDQGGPLPKV 267
L VG Y G+ +DYW W+DE + EVLVMTP LLN L HR +L L V VL+FDECH AR KHPYA +MT ++ EL LP+V
Sbjct: 94 LKVGKYYGEMGVDYWDAATWKDEKEKHEVLVMTPQILLNALRHR---FLRLDHVKVLIFDECHNARGKHPYACIMTEFYHRELASSTLQLPRV 183
BLAST of mRNA_H-elongata_contig176823.4636.1 vs. uniprot
Match: UPI000D630596 (LOW QUALITY PROTEIN: endoribonuclease Dicer homolog 2 n=1 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=UPI000D630596) HSP 1 Score: 85.1 bits (209), Expect = 2.610e-17 Identity = 43/93 (46.24%), Postives = 59/93 (63.44%), Query Frame = 1
Query: 1 LSVGPYVG-KDLDYWGLKKWRDEMDTKEVLVMTPNALLNLLHRGKEYLSLADVGVLVFDECHQARKKHPYARVMT--FYMELQDQGGPLPKVL 270
L V Y G K +DYW W+ + D E+LVMTP LL+ L ++LSL + VL+FDECH A+K+HPYA +MT ++ EL G LP++L
Sbjct: 92 LKVEEYWGEKGVDYWNAADWKKQQDENELLVMTPAILLDALRH--KFLSLDIIKVLIFDECHNAKKRHPYALIMTEFYHRELHLGGSQLPRIL 182
BLAST of mRNA_H-elongata_contig176823.4636.1 vs. uniprot
Match: A0A1R3JY25_COCAP (Uncharacterized protein n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3JY25_COCAP) HSP 1 Score: 84.7 bits (208), Expect = 3.560e-17 Identity = 44/93 (47.31%), Postives = 58/93 (62.37%), Query Frame = 1
Query: 1 LSVGPYVGK-DLDYWGLKKWRDEMDTKEVLVMTPNALLNLLHRGKEYLSLADVGVLVFDECHQARKKHPYARVMTFYMELQDQGGP--LPKVL 270
L VG Y G D+D+W KW+ E++ EVLVMTP LLN L ++L + VL+FDECH AR KHPYA +MT + Q + G LP++L
Sbjct: 94 LKVGKYWGDMDVDFWDSAKWKQEIEKYEVLVMTPQILLNCLRHSFFKINL--IQVLIFDECHHARGKHPYASIMTEFYHQQLKAGESNLPRIL 184
BLAST of mRNA_H-elongata_contig176823.4636.1 vs. uniprot
Match: A0A3Q0EUT1_VIGRR (endoribonuclease Dicer homolog 2 isoform X1 n=5 Tax=Vigna TaxID=3913 RepID=A0A3Q0EUT1_VIGRR) HSP 1 Score: 84.7 bits (208), Expect = 3.560e-17 Identity = 42/92 (45.65%), Postives = 56/92 (60.87%), Query Frame = 1
Query: 1 LSVGPYVG-KDLDYWGLKKWRDEMDTKEVLVMTPNALLNLLHRGKEYLSLADVGVLVFDECHQARKKHPYARVMT--FYMELQDQGGPLPKV 267
L VG Y G K +D+W W+ EMD EVL+MTP LLN L +L L + VL+ DECH AR +HPYAR+MT ++ +L LP++
Sbjct: 128 LKVGVYWGEKGVDFWDAATWKQEMDKHEVLIMTPVILLNCLRHS--FLKLNMIKVLIMDECHHARGRHPYARIMTEFYHHQLHSGSSDLPRI 217
BLAST of mRNA_H-elongata_contig176823.4636.1 vs. uniprot
Match: A0A2Z7AYE5_9LAMI (Endoribonuclease Dicer2 n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7AYE5_9LAMI) HSP 1 Score: 84.0 bits (206), Expect = 6.630e-17 Identity = 42/92 (45.65%), Postives = 56/92 (60.87%), Query Frame = 1
Query: 1 LSVGPYVGK-DLDYWGLKKWRDEMDTKEVLVMTPNALLNLLHRGKEYLSLADVGVLVFDECHQARKKHPYARVMT--FYMELQDQGGPLPKV 267
L VG Y G+ +DYW W+ + D EVLVMTP LL+ L +L L + +L+FDECH AR KHPYAR+M ++ EL + LP+V
Sbjct: 97 LKVGKYYGELGVDYWDAATWKVQKDENEVLVMTPQILLDALRHS--FLKLNQIKILIFDECHNARGKHPYARIMMEFYHRELSSKNLLLPRV 186
BLAST of mRNA_H-elongata_contig176823.4636.1 vs. uniprot
Match: A0A830BRC5_9LAMI (Endoribonuclease dicer homolog 2 n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830BRC5_9LAMI) HSP 1 Score: 84.0 bits (206), Expect = 6.630e-17 Identity = 45/93 (48.39%), Postives = 59/93 (63.44%), Query Frame = 1
Query: 1 LSVGPYVGK-DLDYWGLKKWRDEMDTKEVLVMTPNALLNLL-HRGKEYLSLADVGVLVFDECHQARKKHPYARVMT--FYMELQDQGGPLPKV 267
L VG Y G+ +DYW + W+D+++ EVLVMTP LLN L HR +L L + VL+FDECH AR KH YA +MT ++ EL LP+V
Sbjct: 95 LKVGKYYGEMGVDYWDAEIWKDQVELHEVLVMTPQILLNALRHR---FLRLDQIKVLIFDECHNARGKHSYACIMTEFYHRELASNNLKLPRV 184 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig176823.4636.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig176823.4636.1 >prot_H-elongata_contig176823.4636.1 ID=prot_H-elongata_contig176823.4636.1|Name=mRNA_H-elongata_contig176823.4636.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp LSVGPYVGKDLDYWGLKKWRDEMDTKEVLVMTPNALLNLLHRGKEYLSLAback to top mRNA from alignment at H-elongata_contig176823:4..589- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig176823.4636.1 ID=mRNA_H-elongata_contig176823.4636.1|Name=mRNA_H-elongata_contig176823.4636.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=586bp|location=Sequence derived from alignment at H-elongata_contig176823:4..589- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig176823:4..589- >mRNA_H-elongata_contig176823.4636.1 ID=mRNA_H-elongata_contig176823.4636.1|Name=mRNA_H-elongata_contig176823.4636.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig176823:4..589- (Himanthalia elongata Himel1 dioecious)back to top |