prot_H-elongata_contig176642.4626.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig176642.4626.1
Unique Name	prot_H-elongata_contig176642.4626.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	154

Homology

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BLAST of mRNA_H-elongata_contig176642.4626.1 vs. uniprot
Match: A0A6H5JTI6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI6_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 3.210e-13
Identity = 51/154 (33.12%), Postives = 76/154 (49.35%), Query Frame = 0

Query:    5 SLGKHSYVVIFVDDCTRFKVVKFAKKKSDTMATLVSLIADYIT---PQTLLIKCVMIDKGSKFKEETQSELDRR-SIMHEHTTSDMPQYNGVVECALGLLREKIIALMKELDNVINVLRE--KLWAHAMLFACDVTNKSAMTSKDRSKSPYELW 152
            SLG   Y +I  DD TR+  V F K KSD        +A+      P  +++  V  D G +F E     + R+  I  E T +  P+YNGV E ALGL+++  +A   +   +         LWA A+ ++C+  N ++ TS    KSPYE+W
Sbjct:  748 SLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMW 899

[Close]

BLAST of mRNA_H-elongata_contig176642.4626.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 3.230e-13
Identity = 51/154 (33.12%), Postives = 76/154 (49.35%), Query Frame = 0

Query:    5 SLGKHSYVVIFVDDCTRFKVVKFAKKKSDTMATLVSLIADYIT---PQTLLIKCVMIDKGSKFKEETQSELDRR-SIMHEHTTSDMPQYNGVVECALGLLREKIIALMKELDNVINVLRE--KLWAHAMLFACDVTNKSAMTSKDRSKSPYELW 152
            SLG   Y +I  DD TR+  V F K KSD        +A+      P  +++  V  D G +F E     + R+  I  E T +  P+YNGV E ALGL+++  +A   +   +         LWA A+ ++C+  N ++ TS    KSPYE+W
Sbjct:  583 SLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMW 734

[Close]

BLAST of mRNA_H-elongata_contig176642.4626.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 3.230e-13
Identity = 51/154 (33.12%), Postives = 76/154 (49.35%), Query Frame = 0

Query:    5 SLGKHSYVVIFVDDCTRFKVVKFAKKKSDTMATLVSLIADYIT---PQTLLIKCVMIDKGSKFKEETQSELDRR-SIMHEHTTSDMPQYNGVVECALGLLREKIIALMKELDNVINVLRE--KLWAHAMLFACDVTNKSAMTSKDRSKSPYELW 152
            SLG   Y +I  DD TR+  V F K KSD        +A+      P  +++  V  D G +F E     + R+  I  E T +  P+YNGV E ALGL+++  +A   +   +         LWA A+ ++C+  N ++ TS    KSPYE+W
Sbjct:  596 SLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMW 747

[Close]

BLAST of mRNA_H-elongata_contig176642.4626.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 3.240e-13
Identity = 51/154 (33.12%), Postives = 76/154 (49.35%), Query Frame = 0

Query:    5 SLGKHSYVVIFVDDCTRFKVVKFAKKKSDTMATLVSLIADYIT---PQTLLIKCVMIDKGSKFKEETQSELDRR-SIMHEHTTSDMPQYNGVVECALGLLREKIIALMKELDNVINVLRE--KLWAHAMLFACDVTNKSAMTSKDRSKSPYELW 152
            SLG   Y +I  DD TR+  V F K KSD        +A+      P  +++  V  D G +F E     + R+  I  E T +  P+YNGV E ALGL+++  +A   +   +         LWA A+ ++C+  N ++ TS    KSPYE+W
Sbjct:  739 SLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMW 890

[Close]

BLAST of mRNA_H-elongata_contig176642.4626.1 vs. uniprot
Match: A0A6H5K1N9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N9_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 7.930e-13
Identity = 51/155 (32.90%), Postives = 75/155 (48.39%), Query Frame = 0

Query:    5 SLGKHSYVVIFVDDCTRFKVVKFAKKKSDTMATLVSLI----ADYITPQTLLIKCVMIDKGSKFKEETQSELDRR-SIMHEHTTSDMPQYNGVVECALGLLREKIIALMKELDNVINVLRE--KLWAHAMLFACDVTNKSAMTSKDRSKSPYELW 152
            SLG   Y +I  DD TR+  V F K KSD        +    AD      ++++    D G +F E     + R+  I  E T +  P+YNGV E ALGL+++  IA   +   +         LWA A+ ++C+  N ++ TS    KSPYE+W
Sbjct:  381 SLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLKEKRADGAPSDVMVVRS---DNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAAIAARIQAPTLYPGAPNYRSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMW 532

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BLAST of mRNA_H-elongata_contig176642.4626.1 vs. uniprot
Match: UPI000D0898A5 (uncharacterized protein LOC112199671 n=1 Tax=Rosa chinensis TaxID=74649 RepID=UPI000D0898A5)

HSP 1 Score: 72.0 bits (175), Expect = 9.550e-12
Identity = 46/156 (29.49%), Postives = 77/156 (49.36%), Query Frame = 0

Query:    1 MKHSSLGKHSYVVIFVDDCTRFKVVKFAKKKSDTMATLVSLIADYITPQTLL---IKCVMIDKGSKFKEETQSEL-DRRSIMHEHTTSDMPQYNGVVECALGLLREKIIALMKELDNVINVLREKLWAHAMLFACDVTNKSAMTSKDRSKSPYELW 152
            ++  S+G   Y+++ VDD TRF  V F ++KSD   +   L    +  ++ L   I  +  D G++F+  +     D   IMHE++    PQ NG+VE      + +++  M  +    + +    WA A+  AC  TN+  + S    K+PYELW
Sbjct:  740 IQKESIGGKKYILVLVDDFTRFTWVNFLREKSDAFTSFKGLCKRILNEKSSLNTSIVRIRTDHGTEFQNSSFDNFCDEHGIMHEYSAPITPQQNGIVE-----RKNRVLIEMARVLLCGSGIAHIFWAEAVNTACYTTNRVFLRS-GTEKTPYELW 889

[Close]

BLAST of mRNA_H-elongata_contig176642.4626.1 vs. uniprot
Match: A0A699KEK6_TANCI (Integrase, catalytic region, zinc finger, CCHC-type, peptidase aspartic, catalytic (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699KEK6_TANCI)

HSP 1 Score: 70.9 bits (172), Expect = 2.180e-11
Identity = 47/155 (30.32%), Postives = 75/155 (48.39%), Query Frame = 0

Query:    1 MKHSSLGKHSYVVIFVDDCTRFKVVKFAKKKSDTMATLVSLIADYITPQTLLIKCVMIDKGSKFKEETQSEL-DRRSIMHEHTTSDMPQYNGVVE---CALGLLREKIIALMKELDNVINVLREKLWAHAMLFACDVTNKSAMTSKDRSKSPYEL 151
            M+  ++    Y+++ VDD +RF  VKF + K +T   ++  I          ++ V  + G++F   T +E  +R SI H+ T    PQ NGVVE   C L  +   ++   K L          LWA A+  AC   N+S + ++   K+PYEL
Sbjct:  399 MRVQTINGKKYILVIVDDYSRFTWVKFLRSKDETPDVVIKFITQIQVGLNKTVRYVRTNNGTEFVNHTMTEYYERISIFHQKTVPITPQQNGVVERQNCTLVKVARTMLIFSKALMF--------LWAEAVATACYTQNRSLIHTRHH-KTPYEL 544

[Close]

BLAST of mRNA_H-elongata_contig176642.4626.1 vs. uniprot
Match: A0A6L2NN25_TANCI (Integrase catalytic domain-containing protein n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2NN25_TANCI)

HSP 1 Score: 69.7 bits (169), Expect = 5.830e-11
Identity = 49/152 (32.24%), Postives = 78/152 (51.32%), Query Frame = 0

Query:    1 MKHSSLGKHSYVVIFVDDCTRFKVVKFAKKKSDTMATLVSLIADYITPQTLLIKCVMIDKGSKFKEETQSEL-DRRSIMHEHTTSDMPQYNGVVECALGLLREKIIALMKELDNVINVLREKLWAHAMLFACDVTNKSAMTSKDRSKSPYEL 151
            M++ S+ +  YV++ VDD +R+  V F   K +    ++S I        L ++ V  D G+KFK +T ++  D  SI  + + +  PQ NGVVE     L E +   M    N+ ++L    WA A+  AC + N+S +  K   K+PYEL
Sbjct:  196 MRNPSINEKRYVLVVVDDYSRYIWVFFIHSKDEASKVIISFIKKTQVNLQLQVQRVRTDNGTKFKNKTLAKFFDEVSITQQFSAARTPQQNGVVERRNRTLVE-VARTMLTFANIPSLL----WAEAIATACFIQNRSII-HKHFDKTPYEL 341

[Close]

BLAST of mRNA_H-elongata_contig176642.4626.1 vs. uniprot
Match: A0A6H5JXF7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXF7_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 8.160e-11
Identity = 50/155 (32.26%), Postives = 75/155 (48.39%), Query Frame = 0

Query:    4 SSLGKHSYVVIFVDDCTRFKVVKFAKKKSDTMATLVSLIADYIT---PQTLLIKCVMIDKGSKFKEETQSELDRR-SIMHEHTTSDMPQYNGVVECALGLLREKIIALMKELDNVINVLRE--KLWAHAMLFACDVTNKSAMTSKDRSKSPYELW 152
            S +GK  Y +I  D  TR+  V F K KSD        +A+      P  +++  V  D G +F E     + R+  I  E T +  P+YNGV E ALGL+++  +A   +   +          WA A+ +AC+  N ++ TS    KSPYE+W
Sbjct:  609 SLVGKW-YTLIVKDVYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGTPNYPSFWAEAIAWACNALNCTSTTSNPEKKSPYEMW 760

[Close]

BLAST of mRNA_H-elongata_contig176642.4626.1 vs. uniprot
Match: A0A6L2JAN5_TANCI (Integrase catalytic domain-containing protein n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2JAN5_TANCI)

HSP 1 Score: 69.3 bits (168), Expect = 8.550e-11
Identity = 45/152 (29.61%), Postives = 74/152 (48.68%), Query Frame = 0

Query:    1 MKHSSLGKHSYVVIFVDDCTRFKVVKFAKKKSDTMATLVSLIADYITPQTLLIKCVMIDKGSKFKEETQSEL-DRRSIMHEHTTSDMPQYNGVVECALGLLREKIIALMKELDNVINVLREKLWAHAMLFACDVTNKSAMTSKDRSKSPYEL 151
            M+  ++    Y+++ VDD +RF  VKF + K +T+  ++  I          ++ V  D G++F   T +E  +R  I H+ T    PQ NGVVE     L E    ++     + +     LWA A+  AC   N+S + ++   K+PYEL
Sbjct:  945 MRVQTINGKKYILVIVDDYSRFTWVKFFRLKDETLDVVIKFITQIQVGLNKTVRYVRTDNGTEFVNHTMTEYYERIGIFHQKTMPRTPQRNGVVERQNRTLVEAARTML-----IFSKALMFLWAEAVATACYTQNRSLIHTRHH-KTPYEL 1090

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig176642.4626.1 vs. uniprot

BLAST of mRNA_H-elongata_contig176642.4626.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JTI6_9PHAE	3.210e-13	33.12	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JZQ8_9PHAE	3.230e-13	33.12	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JN00_9PHAE	3.230e-13	33.12	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KF60_9PHAE	3.240e-13	33.12	Uncharacterized protein n=12 Tax=Ectocarpus sp. CC...	[more]
A0A6H5K1N9_9PHAE	7.930e-13	32.90	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
UPI000D0898A5	9.550e-12	29.49	uncharacterized protein LOC112199671 n=1 Tax=Rosa ...	[more]
A0A699KEK6_TANCI	2.180e-11	30.32	Integrase, catalytic region, zinc finger, CCHC-typ...	[more]
A0A6L2NN25_TANCI	5.830e-11	32.24	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JXF7_9PHAE	8.160e-11	32.26	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6L2JAN5_TANCI	8.550e-11	29.61	Integrase catalytic domain-containing protein n=1 ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 7..103 e-value: 4.4E-9 score: 36.6
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..153 score: 14.57
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..153 e-value: 5.4E-14 score: 53.8
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 8..153

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig176642	contig	H-elongata_contig176642:511..972 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig176642.4626.1	mRNA_H-elongata_contig176642.4626.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig176642 496..972 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig176642.4626.1 ID=prot_H-elongata_contig176642.4626.1|Name=mRNA_H-elongata_contig176642.4626.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=154bp
MKHSSLGKHSYVVIFVDDCTRFKVVKFAKKKSDTMATLVSLIADYITPQT
LLIKCVMIDKGSKFKEETQSELDRRSIMHEHTTSDMPQYNGVVECALGLL
REKIIALMKELDNVINVLREKLWAHAMLFACDVTNKSAMTSKDRSKSPYE
LWF*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001584	Integrase_cat-core
IPR036397	RNaseH_sf
IPR012337	RNaseH-like_sf