mRNA_H-elongata_contig176642.4626.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig176642.4626.1 vs. uniprot
Match: A0A6H5JTI6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI6_9PHAE) HSP 1 Score: 80.1 bits (196), Expect = 1.720e-14 Identity = 53/163 (32.52%), Postives = 80/163 (49.08%), Query Frame = 1
Query: 1 DVGGPMKHSSLGKHSYVVIFVDDCTRFKVVKFAKKKSDTMATLVSLIADYIT---PQTLLIKCVMIDKGSKFKEETQSELDRR-SIMHEHTTSDMPQYNGVVECALGLLREKIIALMKELDNVINVLRE--KLWAHAMLFACDVTNKSAMTSKDRSKSPYELW 471
D+ G + SLG Y +I DD TR+ V F K KSD +A+ P +++ V D G +F E + R+ I E T + P+YNGV E ALGL+++ +A + + LWA A+ ++C+ N ++ TS KSPYE+W
Sbjct: 739 DLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMW 899
BLAST of mRNA_H-elongata_contig176642.4626.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 80.1 bits (196), Expect = 1.730e-14 Identity = 53/163 (32.52%), Postives = 80/163 (49.08%), Query Frame = 1
Query: 1 DVGGPMKHSSLGKHSYVVIFVDDCTRFKVVKFAKKKSDTMATLVSLIADYIT---PQTLLIKCVMIDKGSKFKEETQSELDRR-SIMHEHTTSDMPQYNGVVECALGLLREKIIALMKELDNVINVLRE--KLWAHAMLFACDVTNKSAMTSKDRSKSPYELW 471
D+ G + SLG Y +I DD TR+ V F K KSD +A+ P +++ V D G +F E + R+ I E T + P+YNGV E ALGL+++ +A + + LWA A+ ++C+ N ++ TS KSPYE+W
Sbjct: 574 DLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMW 734
BLAST of mRNA_H-elongata_contig176642.4626.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 80.1 bits (196), Expect = 1.730e-14 Identity = 53/163 (32.52%), Postives = 80/163 (49.08%), Query Frame = 1
Query: 1 DVGGPMKHSSLGKHSYVVIFVDDCTRFKVVKFAKKKSDTMATLVSLIADYIT---PQTLLIKCVMIDKGSKFKEETQSELDRR-SIMHEHTTSDMPQYNGVVECALGLLREKIIALMKELDNVINVLRE--KLWAHAMLFACDVTNKSAMTSKDRSKSPYELW 471
D+ G + SLG Y +I DD TR+ V F K KSD +A+ P +++ V D G +F E + R+ I E T + P+YNGV E ALGL+++ +A + + LWA A+ ++C+ N ++ TS KSPYE+W
Sbjct: 587 DLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMW 747
BLAST of mRNA_H-elongata_contig176642.4626.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE) HSP 1 Score: 80.1 bits (196), Expect = 1.740e-14 Identity = 53/163 (32.52%), Postives = 80/163 (49.08%), Query Frame = 1
Query: 1 DVGGPMKHSSLGKHSYVVIFVDDCTRFKVVKFAKKKSDTMATLVSLIADYIT---PQTLLIKCVMIDKGSKFKEETQSELDRR-SIMHEHTTSDMPQYNGVVECALGLLREKIIALMKELDNVINVLRE--KLWAHAMLFACDVTNKSAMTSKDRSKSPYELW 471
D+ G + SLG Y +I DD TR+ V F K KSD +A+ P +++ V D G +F E + R+ I E T + P+YNGV E ALGL+++ +A + + LWA A+ ++C+ N ++ TS KSPYE+W
Sbjct: 730 DLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYPSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMW 890
BLAST of mRNA_H-elongata_contig176642.4626.1 vs. uniprot
Match: UPI000D0898A5 (uncharacterized protein LOC112199671 n=1 Tax=Rosa chinensis TaxID=74649 RepID=UPI000D0898A5) HSP 1 Score: 78.6 bits (192), Expect = 5.890e-14 Identity = 49/161 (30.43%), Postives = 81/161 (50.31%), Query Frame = 1
Query: 1 DVGGPMKHSSLGKHSYVVIFVDDCTRFKVVKFAKKKSDTMATLVSLIADYITPQTLL---IKCVMIDKGSKFKEETQSEL-DRRSIMHEHTTSDMPQYNGVVECALGLLREKIIALMKELDNVINVLREKLWAHAMLFACDVTNKSAMTSKDRSKSPYELW 471
D+ GP++ S+G Y+++ VDD TRF V F ++KSD + L + ++ L I + D G++F+ + D IMHE++ PQ NG+VE + +++ M + + + WA A+ AC TN+ + S K+PYELW
Sbjct: 735 DLVGPIQKESIGGKKYILVLVDDFTRFTWVNFLREKSDAFTSFKGLCKRILNEKSSLNTSIVRIRTDHGTEFQNSSFDNFCDEHGIMHEYSAPITPQQNGIVE-----RKNRVLIEMARVLLCGSGIAHIFWAEAVNTACYTTNRVFLRS-GTEKTPYELW 889
BLAST of mRNA_H-elongata_contig176642.4626.1 vs. uniprot
Match: A0A6H5K1N9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N9_9PHAE) HSP 1 Score: 77.8 bits (190), Expect = 1.070e-13 Identity = 52/164 (31.71%), Postives = 79/164 (48.17%), Query Frame = 1
Query: 1 DVGGPMKHSSLGKHSYVVIFVDDCTRFKVVKFAKKKSDTMATLVSLI----ADYITPQTLLIKCVMIDKGSKFKEETQSELDRR-SIMHEHTTSDMPQYNGVVECALGLLREKIIALMKELDNVINVLRE--KLWAHAMLFACDVTNKSAMTSKDRSKSPYELW 471
++ G + SLG Y +I DD TR+ V F K KSD + AD ++++ D G +F E + R+ I E T + P+YNGV E ALGL+++ IA + + LWA A+ ++C+ N ++ TS KSPYE+W
Sbjct: 372 ELSGKARAQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLKEKRADGAPSDVMVVRS---DNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAAIAARIQAPTLYPGAPNYRSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMW 532
BLAST of mRNA_H-elongata_contig176642.4626.1 vs. uniprot
Match: A0A699KEK6_TANCI (Integrase, catalytic region, zinc finger, CCHC-type, peptidase aspartic, catalytic (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699KEK6_TANCI) HSP 1 Score: 77.4 bits (189), Expect = 1.340e-13 Identity = 50/160 (31.25%), Postives = 79/160 (49.38%), Query Frame = 1
Query: 1 DVGGPMKHSSLGKHSYVVIFVDDCTRFKVVKFAKKKSDTMATLVSLIADYITPQTLLIKCVMIDKGSKFKEETQSEL-DRRSIMHEHTTSDMPQYNGVVE---CALGLLREKIIALMKELDNVINVLREKLWAHAMLFACDVTNKSAMTSKDRSKSPYEL 468
D+ GPM+ ++ Y+++ VDD +RF VKF + K +T ++ I ++ V + G++F T +E +R SI H+ T PQ NGVVE C L + ++ K L LWA A+ AC N+S + ++ K+PYEL
Sbjct: 394 DLCGPMRVQTINGKKYILVIVDDYSRFTWVKFLRSKDETPDVVIKFITQIQVGLNKTVRYVRTNNGTEFVNHTMTEYYERISIFHQKTVPITPQQNGVVERQNCTLVKVARTMLIFSKALMF--------LWAEAVATACYTQNRSLIHTRHH-KTPYEL 544
BLAST of mRNA_H-elongata_contig176642.4626.1 vs. uniprot
Match: A0A6L2JAN5_TANCI (Integrase catalytic domain-containing protein n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2JAN5_TANCI) HSP 1 Score: 75.9 bits (185), Expect = 5.280e-13 Identity = 48/157 (30.57%), Postives = 78/157 (49.68%), Query Frame = 1
Query: 1 DVGGPMKHSSLGKHSYVVIFVDDCTRFKVVKFAKKKSDTMATLVSLIADYITPQTLLIKCVMIDKGSKFKEETQSEL-DRRSIMHEHTTSDMPQYNGVVECALGLLREKIIALMKELDNVINVLREKLWAHAMLFACDVTNKSAMTSKDRSKSPYEL 468
D+ GPM+ ++ Y+++ VDD +RF VKF + K +T+ ++ I ++ V D G++F T +E +R I H+ T PQ NGVVE L E ++ + + LWA A+ AC N+S + ++ K+PYEL
Sbjct: 940 DLCGPMRVQTINGKKYILVIVDDYSRFTWVKFFRLKDETLDVVIKFITQIQVGLNKTVRYVRTDNGTEFVNHTMTEYYERIGIFHQKTMPRTPQRNGVVERQNRTLVEAARTML-----IFSKALMFLWAEAVATACYTQNRSLIHTRHH-KTPYEL 1090
BLAST of mRNA_H-elongata_contig176642.4626.1 vs. uniprot
Match: A0A6L2P4V0_TANCI (Gag-Pol polyprotein n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2P4V0_TANCI) HSP 1 Score: 75.5 bits (184), Expect = 6.860e-13 Identity = 45/157 (28.66%), Postives = 78/157 (49.68%), Query Frame = 1
Query: 1 DVGGPMKHSSLGKHSYVVIFVDDCTRFKVVKFAKKKSDTMATLVSLIADYITPQTLLIKCVMIDKGSKFKEETQSEL-DRRSIMHEHTTSDMPQYNGVVECALGLLREKIIALMKELDNVINVLREKLWAHAMLFACDVTNKSAMTSKDRSKSPYEL 468
D+ GPM+ ++ Y+++ VDD +RF VKF + K +T ++ +I +++ V D G++F T +E +R I H+ T PQ NGVV+ R + + + + LWA A+ AC N+S + ++ K+PYE+
Sbjct: 493 DLCGPMRVQTINGKKYILVIVDDYSRFTWVKFLRSKDETPEVVIKVITQIQVGLNKIVRYVRTDNGTEFVNHTMTEYYERIGIFHQKTVLRTPQQNGVVK-----RRNRTLVKAARTMLIFSKAPMFLWAEAVATACYTQNRSLIHTRHH-KTPYEM 643
BLAST of mRNA_H-elongata_contig176642.4626.1 vs. uniprot
Match: A0A6L2JAF3_TANCI (Integrase catalytic domain-containing protein n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2JAF3_TANCI) HSP 1 Score: 75.1 bits (183), Expect = 9.880e-13 Identity = 48/157 (30.57%), Postives = 76/157 (48.41%), Query Frame = 1
Query: 1 DVGGPMKHSSLGKHSYVVIFVDDCTRFKVVKFAKKKSDTMATLVSLIADYITPQTLLIKCVMIDKGSKFKEETQSEL-DRRSIMHEHTTSDMPQYNGVVECALGLLREKIIALMKELDNVINVLREKLWAHAMLFACDVTNKSAMTSKDRSKSPYEL 468
D+ GPM+ S+ Y+++ VDD +RF VKF + K + ++ + + ++C+ D G+KF +T E + I HE + + PQ NGVVE L E ++ + LWA AM AC N+S + + K+PYEL
Sbjct: 1480 DLCGPMRVESVNGKKYILVLVDDYSRFTWVKFLRSKDEAPDFIIKFLKMIQVRLKVTVRCIRTDNGTKFVNQTLREYYEEVGISHETSVARSPQQNGVVERRNRTLIEAAHTMLIYAQASLF-----LWAEAMATACYAQNRSIIRLR-HGKTPYEL 1630 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig176642.4626.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig176642.4626.1 >prot_H-elongata_contig176642.4626.1 ID=prot_H-elongata_contig176642.4626.1|Name=mRNA_H-elongata_contig176642.4626.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=154bp MKHSSLGKHSYVVIFVDDCTRFKVVKFAKKKSDTMATLVSLIADYITPQTback to top mRNA from alignment at H-elongata_contig176642:496..972+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig176642.4626.1 ID=mRNA_H-elongata_contig176642.4626.1|Name=mRNA_H-elongata_contig176642.4626.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=477bp|location=Sequence derived from alignment at H-elongata_contig176642:496..972+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig176642:496..972+ >mRNA_H-elongata_contig176642.4626.1 ID=mRNA_H-elongata_contig176642.4626.1|Name=mRNA_H-elongata_contig176642.4626.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=924bp|location=Sequence derived from alignment at H-elongata_contig176642:496..972+ (Himanthalia elongata Himel1 dioecious)back to top |