mRNA_H-elongata_contig176444.4616.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig176444.4616.1
Unique NamemRNA_H-elongata_contig176444.4616.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig176444.4616.1 vs. uniprot
Match: D7FIR5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIR5_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 1.430e-10
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:    1 QELQDIVEQIDMAATFVKIGGFGRLIALVRPGYRAEKV 114
            QELQD+VEQIDMAATF KIGGFGRL+ALV P  R EK+
Sbjct:  245 QELQDVVEQIDMAATFAKIGGFGRLLALVTPSRRPEKL 282
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig176444.4616.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIR5_ECTSI1.430e-1078.95Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig176444contigH-elongata_contig176444:718..831 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size114
Cds size114
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930021.4834495-CDS-H-elongata_contig176444:717..8311622930021.4834495-CDS-H-elongata_contig176444:717..831Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig176444 718..831 +
1691679249.4891014-CDS-H-elongata_contig176444:717..8311691679249.4891014-CDS-H-elongata_contig176444:717..831Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig176444 718..831 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig176444.4616.1prot_H-elongata_contig176444.4616.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig176444 718..831 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig176444.4616.1

>prot_H-elongata_contig176444.4616.1 ID=prot_H-elongata_contig176444.4616.1|Name=mRNA_H-elongata_contig176444.4616.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=38bp
QELQDIVEQIDMAATFVKIGGFGRLIALVRPGYRAEKV
back to top

mRNA from alignment at H-elongata_contig176444:718..831+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig176444.4616.1 ID=mRNA_H-elongata_contig176444.4616.1|Name=mRNA_H-elongata_contig176444.4616.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=114bp|location=Sequence derived from alignment at H-elongata_contig176444:718..831+ (Himanthalia elongata Himel1 dioecious)
CAGGAGCTTCAGGACATCGTGGAGCAGATTGACATGGCAGCAACGTTCGT
CAAGATCGGCGGGTTCGGGAGGCTCATCGCCTTGGTCCGTCCCGGATACA
GGGCAGAAAAGGTA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig176444:718..831+

>mRNA_H-elongata_contig176444.4616.1 ID=mRNA_H-elongata_contig176444.4616.1|Name=mRNA_H-elongata_contig176444.4616.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=228bp|location=Sequence derived from alignment at H-elongata_contig176444:718..831+ (Himanthalia elongata Himel1 dioecious)
CAGGAGCTTCAGGACATCGTGGAGCAGATTGACATGGCAGCAACGTTCGT
CAAGATCGGCGGGTTCGGGAGGCTCATCGCCTTGGTCCGTCCCGGATACA
GGGCAGAAAAGGTACAGGAGCTTCAGGACATCGTGGAGCAGATTGACATG
GCAGCAACGTTCGTCAAGATCGGCGGGTTCGGGAGGCTCATCGCCTTGGT
CCGTCCCGGATACAGGGCAGAAAAGGTA
back to top