mRNA_H-elongata_contig17601.4596.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig17601.4596.1 vs. uniprot
Match: A0A6H5JDH3_9PHAE (SMC_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDH3_9PHAE) HSP 1 Score: 284 bits (727), Expect = 1.190e-88 Identity = 159/248 (64.11%), Postives = 184/248 (74.19%), Query Frame = 1
Query: 1 KILSSELRALRRRSGEKDRRSGGPAVD---------------TGAVDEVTFRQRQAKVGVLKQQLQSVLEGTRQLEAGVIACEGRMHEANEVCYAVVRAELRTLFGALCRNKSADLVLEGTKFEEGLRLVVRN------EPAGATTPPVAPAATTEVGRSPQELSGGQQALLGLAFVLALASYQAPPLCLLDEVDAALDETNQAAAARLLAMRFKEAQAFCVSHHSDFHRQSDKIIAVEICDGVSRVR 681
K+LS+ELR LR +SG+ + G+VDEVT +R+AKVG+LKQQL+SVLEGTRQLEAGV+ACEGRMHEANE CYA VR ELR+LFGALC NKSADLV+ G K E+G+RLVVRN A TT + A V R+PQELSGGQQALLGLA VLAL+SYQAPPLCLLDEVDAALDETNQAAAARL+A+ F+E QA CVSHH+DFHRQS +AVE+ DGVSRV+
Sbjct: 437 KLLSTELRGLRHQSGQHQQHXXXXXXXXXXXXXXXXXXXXXVAGSVDEVTVSKRRAKVGMLKQQLRSVLEGTRQLEAGVVACEGRMHEANEACYASVRGELRSLFGALCHNKSADLVMAGPKLEDGIRLVVRNGNTQAVAAATITTTTPSSAVPAVVERAPQELSGGQQALLGLALVLALSSYQAPPLCLLDEVDAALDETNQAAAARLVALTFREGQALCVSHHADFHRQSGHCVAVEMRDGVSRVQ 684
BLAST of mRNA_H-elongata_contig17601.4596.1 vs. uniprot
Match: D7FQC9_ECTSI (SMC_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQC9_ECTSI) HSP 1 Score: 279 bits (714), Expect = 1.190e-83 Identity = 160/258 (62.02%), Postives = 184/258 (71.32%), Query Frame = 1
Query: 1 KILSSELRALRRRSGEKDRRSGGPA------------------VDTGAVDEVTFRQRQAKVGVLKQQLQSVLEGTRQLEAGVIACEGRMHEANEVCYAVVRAELRTLFGALCRNKSADLVLEGTKFEEGLRLVVRNEPAGATTPPVAP-------------AATTEVGRSPQELSGGQQALLGLAFVLALASYQAPPLCLLDEVDAALDETNQAAAARLLAMRFKEAQAFCVSHHSDFHRQSDKIIAVEICDGVSRVR 681
K+LS+ELR LRR+SG++ + V G+VDEVT +R+AKVG+LKQQL+SVLEGTRQLEAGV+ACEGRMHEANE CYA VR ELR+LFGALCRNKSADLV+ G K E+GLRLVVRN A A V R+PQELSGGQQALLGLA VLAL+SYQAPPLCLLDEVDAALDETNQAAAARL+A+ F+E QA CVSHH+DFHRQS + VE+ DGVSRV+
Sbjct: 908 KLLSTELRGLRRQSGQRQQXXXXXXXXXXXXXXXXXXXXXXXXVVAGSVDEVTVTKRRAKVGMLKQQLRSVLEGTRQLEAGVVACEGRMHEANEACYASVRGELRSLFGALCRNKSADLVMAGPKLEDGLRLVVRNGNTQAXXXXXXXXXXXXXXXXXXXXAVAGVVERAPQELSGGQQALLGLALVLALSSYQAPPLCLLDEVDAALDETNQAAAARLVALTFREGQALCVSHHADFHRQSGHCVPVEMRDGVSRVQ 1165
BLAST of mRNA_H-elongata_contig17601.4596.1 vs. uniprot
Match: A0A836CK59_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK59_9STRA) HSP 1 Score: 130 bits (327), Expect = 4.690e-31 Identity = 95/241 (39.42%), Postives = 121/241 (50.21%), Query Frame = 1
Query: 46 EKDRRSGGPAVDTGAVDEVTFRQRQAKVGVLKQQLQSVLEGTRQLEAGVIACEGRMHEANEVCYAVVRAELRTLFGALCRNKSADLVLEGTKFEEGLRLVVRNEPAGATTPPVAPAATTEV------------------------------GRSPQELSGGQQALLGLAFVLALASYQAPPLCLLDEVDAALDETNQAAAARLLAMRFKEAQAFCVSHHSDFHRQSDKIIAVEICDGVSRV 678
+K RR+ G A+ G VD R R++ V LKQQL V E LE G I +G M AN CYA VR E R L AL K+ADL+ + + L V N + ++ APAA + +S +ELSGGQQ+LLGLAFV AL++Y A PL LLDEVDAALD NQ A LL F+ AQ CVSHH+ + + + V + G SR+
Sbjct: 1063 KKLRRAAG-ALGAG-VDATQVRLRRSTVETLKQQLNMVREAMSHLEGGAILIQGHMEAANAACYAAVRGEFRRLLSALMPTKAADLLRDAARH--ALAFTVTNLTSSSSAQRDAPAAVHDAMDISDDEXXXXXXXXXXXXXXXXXXXXXXXXKSARELSGGQQSLLGLAFVFALSAYHAAPLYLLDEVDAALDAANQRRVAALLPRAFRGAQVLCVSHHAATQALATRRVRVAMEKGSSRI 1299
BLAST of mRNA_H-elongata_contig17601.4596.1 vs. uniprot
Match: F0WC70_9STRA (Chromosome segregation protein Smc putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WC70_9STRA) HSP 1 Score: 105 bits (263), Expect = 7.850e-23 Identity = 62/178 (34.83%), Postives = 93/178 (52.25%), Query Frame = 1
Query: 79 DTGAVDEVTFRQRQAKVGVLKQQLQSVLEGTRQLEAGVIACEGRMHEANEVCYAVVRAELRTLFGALCRNKSADLVLEGTKFEEGLRLVVRNEPAGATTPPVAPAATTEVGRSPQELSGGQQALLGLAFVLALASYQAPPLCLLDEVDAALDETNQAAAARLLAMRFKEAQAFCVSHH 612
D+ V + Q+Q + + Q +L R LE GV + + + N++ + + + +F +K A + L G K E G+ V+++ + T +S +E+SGGQ ALLG++++ ALAS A PLC+LDE+DAALDE NQA A L A F Q CVSHH
Sbjct: 303 DSPVVSNGSLMQKQQALSEFESQAAKILIAVRNLEEGVRSTDEKTTRVNQLAFESIARRFQQIFEQAIPSKRAIMALRGEKVELGIEFRVQDQSSNLT-------------KSTKEMSGGQLALLGMSYIFALASCSASPLCILDEIDAALDEQNQAIIASLAASNFSSIQVICVSHH 467
BLAST of mRNA_H-elongata_contig17601.4596.1 vs. uniprot
Match: A0A024GMI1_9STRA (SMC_N domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GMI1_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 1.510e-16 Identity = 64/210 (30.48%), Postives = 98/210 (46.67%), Query Frame = 1
Query: 79 DTGAVDEVTFRQRQAKVGVLKQQLQSVLEGTRQLEAGVIACEGRMHEANEVCYAVVRAELRTLFGALCRNKSADLVLEGTKFE----------EGLRLVVRNEPAGATTPPVAPAATTEVGRSPQELSGGQQALLGLAFVLALASYQAPPLCLLDEVDAALDETNQAAAARLLAMRFKEAQAFCVSHHSDFHRQSDKIIAVEICDGVSRV 678
D+ V +F Q+Q + + Q V LE G+ + + N++ + + + +F +K A L L K E E LR++ + + + ++ LSGGQ ALLG++++ ALAS A PLC+LDE+DAALDE NQ A L A F+ Q CVSHH H ++ ++I V D S +
Sbjct: 1104 DSPIVSNGSFMQKQKALSEFQTQAAKVAIAVTNLEDGIRTTDEQTTWVNQLAFKSIANRFQHIFEQAIPSKRAFLELSDEKVEVSVEDWMDTHETLRILFKFGVEFKVQD-----RSHSLIKATNTLSGGQLALLGMSYIFALASCSAIPLCILDEIDAALDEQNQENVAALAASNFRSIQVICVSHHKAMHNKAQQLIQVRKKDTTSAI 1308
BLAST of mRNA_H-elongata_contig17601.4596.1 vs. uniprot
Match: A0A3C0FAG6_9FIRM (Chromosome partition protein Smc n=1 Tax=Clostridiales bacterium UBA8153 TaxID=2060924 RepID=A0A3C0FAG6_9FIRM) HSP 1 Score: 81.6 bits (200), Expect = 3.580e-14 Identity = 73/216 (33.80%), Postives = 97/216 (44.91%), Query Frame = 1
Query: 49 KDRRSGGPAVDTGAVDEVTFRQRQAKVGVLKQQLQSVLEGTRQLEAGVIACEGRMHEANEVCYAVVRAELRTLFGALCRNKSADLVLE--GTKFEEGLRLVVRNEPAGATTPPVAPAATTEVGRSPQELS---GGQQALLGLAFVLALASYQAPPLCLLDEVDAALDETNQAAAARLLAMRFKEAQAFCVSHHSDFHRQSDKIIAVEICD-GVSRV 678
K R + AV+ GA+DE FR+ + L Q V R L + +G+M VR+ R LF L SADL L G E G+ + V+ PP GR P LS GG++AL AF+ A+ S PLC+LDEV+A LDETN A LL Q V+HH +D + V + + GVSR+
Sbjct: 994 KGRLAAFGAVNLGAIDE--FRRVSERRDFLSAQRADVESACRDLRRVIQETDGQMESMFRATLTAVRSSFRQLFRRLFGGGSADLTLSDPGRPLESGVEIAVQ--------PP---------GRRPHNLSLLSGGEKALTASAFLFAMLSVNPSPLCVLDEVEATLDETNAARFVSLLRDFTSRTQFIIVTHHKVTMEAADVLYGVTMEENGVSRL 1190
BLAST of mRNA_H-elongata_contig17601.4596.1 vs. uniprot
Match: A0A7C4JIT1_9BACT (Chromosome segregation protein SMC n=1 Tax=Candidatus Acetothermia bacterium TaxID=2053493 RepID=A0A7C4JIT1_9BACT) HSP 1 Score: 73.6 bits (179), Expect = 1.700e-11 Identity = 69/225 (30.67%), Postives = 108/225 (48.00%), Query Frame = 1
Query: 4 ILSSELRALRRRSGEKDRRSGGPAVDTGAVDEVTFRQRQAKVGVLKQQLQSVLEGTRQLEAGVIACEGRMHEANEVCYAVVRAELRTLFGALCRNKSADLVLEGTKFEEGLRLVVRNEPAGATTPPVAPAATTEVGRSPQELSGGQQALLGLAFVLALASYQAPPLCLLDEVDAALDETNQAAAARLLAMRFKEAQAFCVSHHSDFHRQSDKIIAVEICDGVSRV 678
+L + LR + E++ + GP V+ A++E + Q A++ +K ++Q++ + ++E + E + E V A+L LF L A L L G L+++ G R LSGG++AL+ +AFVLALA+ + P LLDEVDAALD N ARLL + +Q VSH+ + R +D+I V + G S V
Sbjct: 324 VLQARLRQI-----ERELAALGP-VNLRAIEE--YEQALAELQEIKTRVQTLEKEKEEIERFIAEVERKKREKFVETMEAVSAQLNQLFVRLFGGGEARLSL-AEPGNLGSDLLIQVRLPGKEL------------RVLDALSGGEKALVAIAFVLALAAGKPAPFYLLDEVDAALDRANSERLARLLKEFAQTSQVIVVSHNEELVRHADRIYGVVLRGGASEV 527
BLAST of mRNA_H-elongata_contig17601.4596.1 vs. uniprot
Match: A0A7V0JVR2_9BACT (SMC_N domain-containing protein n=1 Tax=Candidatus Acetothermia bacterium TaxID=2053493 RepID=A0A7V0JVR2_9BACT) HSP 1 Score: 72.4 bits (176), Expect = 2.320e-11 Identity = 56/172 (32.56%), Postives = 80/172 (46.51%), Query Frame = 1
Query: 172 RQLEAGVIACEGRMHEANEVCYAVVRAELRTLFGALCRNKSADLVLEGT-KFEEGLRLVVRNEPAGATTPPVAPAATTEVGRSPQELSGGQQALLGLAFVLALASYQAPPLCLLDEVDAALDETNQAAAARLLAMRFKEAQAFCVSHHSDFHRQSDKIIAVEICDGVSRVRA 684
R++E + EG+ + V AEL +F L A L LE GLR+ VR LSGG++AL+ +AFVLAL++ + P +LDE DAALD N A LL +++Q VSH+ + R +D++ V + G SRV A
Sbjct: 155 REIEEFIAEVEGKKRRRFQETLEAVSAELDRIFKVLFGGGEAKLSLESPGDLSSGLRIQVRLPGKELVLL--------------DALSGGERALVAIAFVLALSAGRPAPFYILDEADAALDRPNSERLAGLLREIARDSQVIVVSHNEELVRHADRVYGVTLRAGASRVLA 312
BLAST of mRNA_H-elongata_contig17601.4596.1 vs. uniprot
Match: A0A7C4H4S5_9BACT (SMC_N domain-containing protein n=1 Tax=Candidatus Acetothermia bacterium TaxID=2053493 RepID=A0A7C4H4S5_9BACT) HSP 1 Score: 69.7 bits (169), Expect = 5.030e-11 Identity = 62/197 (31.47%), Postives = 94/197 (47.72%), Query Frame = 1
Query: 88 AVDEVTFRQRQAKVGVLKQQLQSVLEGTRQLEAGVIACEGRMHEANEVCYAVVRAELRTLFGALCRNKSADLVLEGTKFEEGLRLVVRNEPAGATTPPVAPAATTEVGRSPQELSGGQQALLGLAFVLALASYQAPPLCLLDEVDAALDETNQAAAARLLAMRFKEAQAFCVSHHSDFHRQSDKIIAVEICDGVSRV 678
A++E + Q A++ +K ++Q++ + ++E + E + E V A+L LF L A L L G L+++ G R LSGG++AL+ +AFVLALA+ + P LLDEVDAALD N ARLL + +Q VSH+ + R +D+I V + G S V
Sbjct: 8 AIEE--YEQALAELQEIKTRVQTLEKEKEEIERFIAEVERKKREKFVETMEAVSAQLNHLFVRLFGGGEARLSL-AEPGNLGSDLLIQVRLPGKEL------------RVLDALSGGEKALVAIAFVLALAAGKPAPFYLLDEVDAALDRANSERLARLLKEFAQTSQVIVVSHNEELVRHADRIYGVVLRGGASEV 189
BLAST of mRNA_H-elongata_contig17601.4596.1 vs. uniprot
Match: A0A1P8JW63_9BURK (Chromosome partition protein Smc n=1 Tax=Rhodoferax koreense TaxID=1842727 RepID=A0A1P8JW63_9BURK) HSP 1 Score: 72.4 bits (176), Expect = 5.120e-11 Identity = 60/206 (29.13%), Postives = 98/206 (47.57%), Query Frame = 1
Query: 73 AVDTGAVDEVTFRQRQAKVGVLKQQLQSVLEGTRQLEAGVIACEGRMHEANEVCYAVVRAELRTLFGALCRNKSADLVLEGTKF-EEGLRLVVRNEPAGATTPPVAPAATTEVGRSPQELSGGQQALLGLAFVLALASYQAPPLCLLDEVDAALDETNQAAAARLLAMRFKEAQAFCVSHHSDFHRQSDKIIAVEICD-GVSRVRA 684
AV+ A+DE+T + + + L Q ++E LE + +G E + V A +F L +A LV+ G + + G+++V +P G + LSGG++AL +A V A+ P CLLDEVDA LD+ N A+L+A K+ Q +SH+ ++++I V + + GVSR+ A
Sbjct: 973 AVNLAALDELTVARERKQF--LDAQTADLVEAMTTLEDAIRKIDGETRELLSGTFNTVNAHFGKMFPELFGGGNARLVITGDEILDSGVQVVA--QPPGKKNQTI------------HLLSGGEKALTAIALVFAIFQLNPAPFCLLDEVDAPLDDANTERYAKLVASMSKQTQFLFISHNKIAMEMAEQLIGVTMQEQGVSRIVA 1162 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17601.4596.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig17601.4596.1 >prot_H-elongata_contig17601.4596.1 ID=prot_H-elongata_contig17601.4596.1|Name=mRNA_H-elongata_contig17601.4596.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=229bp KILSSELRALRRRSGEKDRRSGGPAVDTGAVDEVTFRQRQAKVGVLKQQLback to top mRNA from alignment at H-elongata_contig17601:5614..7240- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig17601.4596.1 ID=mRNA_H-elongata_contig17601.4596.1|Name=mRNA_H-elongata_contig17601.4596.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1627bp|location=Sequence derived from alignment at H-elongata_contig17601:5614..7240- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig17601:5614..7240- >mRNA_H-elongata_contig17601.4596.1 ID=mRNA_H-elongata_contig17601.4596.1|Name=mRNA_H-elongata_contig17601.4596.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1374bp|location=Sequence derived from alignment at H-elongata_contig17601:5614..7240- (Himanthalia elongata Himel1 dioecious)back to top |