prot_H-elongata_contig17601.4596.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig17601.4596.1
Unique Nameprot_H-elongata_contig17601.4596.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length229
Homology
BLAST of mRNA_H-elongata_contig17601.4596.1 vs. uniprot
Match: A0A6H5JDH3_9PHAE (SMC_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDH3_9PHAE)

HSP 1 Score: 284 bits (727), Expect = 1.190e-88
Identity = 159/248 (64.11%), Postives = 184/248 (74.19%), Query Frame = 0
Query:    1 KILSSELRALRRRSGEKDRRSGGPAVD---------------TGAVDEVTFRQRQAKVGVLKQQLQSVLEGTRQLEAGVIACEGRMHEANEVCYAVVRAELRTLFGALCRNKSADLVLEGTKFEEGLRLVVRN------EPAGATTPPVAPAATTEVGRSPQELSGGQQALLGLAFVLALASYQAPPLCLLDEVDAALDETNQAAAARLLAMRFKEAQAFCVSHHSDFHRQSDKIIAVEICDGVSRVR 227
            K+LS+ELR LR +SG+  +                        G+VDEVT  +R+AKVG+LKQQL+SVLEGTRQLEAGV+ACEGRMHEANE CYA VR ELR+LFGALC NKSADLV+ G K E+G+RLVVRN        A  TT   + A    V R+PQELSGGQQALLGLA VLAL+SYQAPPLCLLDEVDAALDETNQAAAARL+A+ F+E QA CVSHH+DFHRQS   +AVE+ DGVSRV+
Sbjct:  437 KLLSTELRGLRHQSGQHQQHXXXXXXXXXXXXXXXXXXXXXVAGSVDEVTVSKRRAKVGMLKQQLRSVLEGTRQLEAGVVACEGRMHEANEACYASVRGELRSLFGALCHNKSADLVMAGPKLEDGIRLVVRNGNTQAVAAATITTTTPSSAVPAVVERAPQELSGGQQALLGLALVLALSSYQAPPLCLLDEVDAALDETNQAAAARLVALTFREGQALCVSHHADFHRQSGHCVAVEMRDGVSRVQ 684          
BLAST of mRNA_H-elongata_contig17601.4596.1 vs. uniprot
Match: D7FQC9_ECTSI (SMC_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQC9_ECTSI)

HSP 1 Score: 279 bits (714), Expect = 1.190e-83
Identity = 160/258 (62.02%), Postives = 184/258 (71.32%), Query Frame = 0
Query:    1 KILSSELRALRRRSGEKDRRSGGPA------------------VDTGAVDEVTFRQRQAKVGVLKQQLQSVLEGTRQLEAGVIACEGRMHEANEVCYAVVRAELRTLFGALCRNKSADLVLEGTKFEEGLRLVVRNEPAGATTPPVAP-------------AATTEVGRSPQELSGGQQALLGLAFVLALASYQAPPLCLLDEVDAALDETNQAAAARLLAMRFKEAQAFCVSHHSDFHRQSDKIIAVEICDGVSRVR 227
            K+LS+ELR LRR+SG++ +                        V  G+VDEVT  +R+AKVG+LKQQL+SVLEGTRQLEAGV+ACEGRMHEANE CYA VR ELR+LFGALCRNKSADLV+ G K E+GLRLVVRN    A                    A    V R+PQELSGGQQALLGLA VLAL+SYQAPPLCLLDEVDAALDETNQAAAARL+A+ F+E QA CVSHH+DFHRQS   + VE+ DGVSRV+
Sbjct:  908 KLLSTELRGLRRQSGQRQQXXXXXXXXXXXXXXXXXXXXXXXXVVAGSVDEVTVTKRRAKVGMLKQQLRSVLEGTRQLEAGVVACEGRMHEANEACYASVRGELRSLFGALCRNKSADLVMAGPKLEDGLRLVVRNGNTQAXXXXXXXXXXXXXXXXXXXXAVAGVVERAPQELSGGQQALLGLALVLALSSYQAPPLCLLDEVDAALDETNQAAAARLVALTFREGQALCVSHHADFHRQSGHCVPVEMRDGVSRVQ 1165          
BLAST of mRNA_H-elongata_contig17601.4596.1 vs. uniprot
Match: A0A836CK59_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK59_9STRA)

HSP 1 Score: 130 bits (327), Expect = 4.690e-31
Identity = 95/241 (39.42%), Postives = 121/241 (50.21%), Query Frame = 0
Query:   16 EKDRRSGGPAVDTGAVDEVTFRQRQAKVGVLKQQLQSVLEGTRQLEAGVIACEGRMHEANEVCYAVVRAELRTLFGALCRNKSADLVLEGTKFEEGLRLVVRNEPAGATTPPVAPAATTEV------------------------------GRSPQELSGGQQALLGLAFVLALASYQAPPLCLLDEVDAALDETNQAAAARLLAMRFKEAQAFCVSHHSDFHRQSDKIIAVEICDGVSRV 226
            +K RR+ G A+  G VD    R R++ V  LKQQL  V E    LE G I  +G M  AN  CYA VR E R L  AL   K+ADL+ +  +    L   V N  + ++    APAA  +                                +S +ELSGGQQ+LLGLAFV AL++Y A PL LLDEVDAALD  NQ   A LL   F+ AQ  CVSHH+     + + + V +  G SR+
Sbjct: 1063 KKLRRAAG-ALGAG-VDATQVRLRRSTVETLKQQLNMVREAMSHLEGGAILIQGHMEAANAACYAAVRGEFRRLLSALMPTKAADLLRDAARH--ALAFTVTNLTSSSSAQRDAPAAVHDAMDISDDEXXXXXXXXXXXXXXXXXXXXXXXXKSARELSGGQQSLLGLAFVFALSAYHAAPLYLLDEVDAALDAANQRRVAALLPRAFRGAQVLCVSHHAATQALATRRVRVAMEKGSSRI 1299          
BLAST of mRNA_H-elongata_contig17601.4596.1 vs. uniprot
Match: F0WC70_9STRA (Chromosome segregation protein Smc putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WC70_9STRA)

HSP 1 Score: 105 bits (263), Expect = 7.850e-23
Identity = 62/178 (34.83%), Postives = 93/178 (52.25%), Query Frame = 0
Query:   27 DTGAVDEVTFRQRQAKVGVLKQQLQSVLEGTRQLEAGVIACEGRMHEANEVCYAVVRAELRTLFGALCRNKSADLVLEGTKFEEGLRLVVRNEPAGATTPPVAPAATTEVGRSPQELSGGQQALLGLAFVLALASYQAPPLCLLDEVDAALDETNQAAAARLLAMRFKEAQAFCVSHH 204
            D+  V   +  Q+Q  +   + Q   +L   R LE GV + + +    N++ +  +    + +F     +K A + L G K E G+   V+++ +  T             +S +E+SGGQ ALLG++++ ALAS  A PLC+LDE+DAALDE NQA  A L A  F   Q  CVSHH
Sbjct:  303 DSPVVSNGSLMQKQQALSEFESQAAKILIAVRNLEEGVRSTDEKTTRVNQLAFESIARRFQQIFEQAIPSKRAIMALRGEKVELGIEFRVQDQSSNLT-------------KSTKEMSGGQLALLGMSYIFALASCSASPLCILDEIDAALDEQNQAIIASLAASNFSSIQVICVSHH 467          
BLAST of mRNA_H-elongata_contig17601.4596.1 vs. uniprot
Match: A0A024GMI1_9STRA (SMC_N domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GMI1_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.510e-16
Identity = 64/210 (30.48%), Postives = 98/210 (46.67%), Query Frame = 0
Query:   27 DTGAVDEVTFRQRQAKVGVLKQQLQSVLEGTRQLEAGVIACEGRMHEANEVCYAVVRAELRTLFGALCRNKSADLVLEGTKFE----------EGLRLVVRNEPAGATTPPVAPAATTEVGRSPQELSGGQQALLGLAFVLALASYQAPPLCLLDEVDAALDETNQAAAARLLAMRFKEAQAFCVSHHSDFHRQSDKIIAVEICDGVSRV 226
            D+  V   +F Q+Q  +   + Q   V      LE G+   + +    N++ +  +    + +F     +K A L L   K E          E LR++ +               +  + ++   LSGGQ ALLG++++ ALAS  A PLC+LDE+DAALDE NQ   A L A  F+  Q  CVSHH   H ++ ++I V   D  S +
Sbjct: 1104 DSPIVSNGSFMQKQKALSEFQTQAAKVAIAVTNLEDGIRTTDEQTTWVNQLAFKSIANRFQHIFEQAIPSKRAFLELSDEKVEVSVEDWMDTHETLRILFKFGVEFKVQD-----RSHSLIKATNTLSGGQLALLGMSYIFALASCSAIPLCILDEIDAALDEQNQENVAALAASNFRSIQVICVSHHKAMHNKAQQLIQVRKKDTTSAI 1308          
BLAST of mRNA_H-elongata_contig17601.4596.1 vs. uniprot
Match: A0A3C0FAG6_9FIRM (Chromosome partition protein Smc n=1 Tax=Clostridiales bacterium UBA8153 TaxID=2060924 RepID=A0A3C0FAG6_9FIRM)

HSP 1 Score: 81.6 bits (200), Expect = 3.580e-14
Identity = 73/216 (33.80%), Postives = 97/216 (44.91%), Query Frame = 0
Query:   17 KDRRSGGPAVDTGAVDEVTFRQRQAKVGVLKQQLQSVLEGTRQLEAGVIACEGRMHEANEVCYAVVRAELRTLFGALCRNKSADLVLE--GTKFEEGLRLVVRNEPAGATTPPVAPAATTEVGRSPQELS---GGQQALLGLAFVLALASYQAPPLCLLDEVDAALDETNQAAAARLLAMRFKEAQAFCVSHHSDFHRQSDKIIAVEICD-GVSRV 226
            K R +   AV+ GA+DE  FR+   +   L  Q   V    R L   +   +G+M          VR+  R LF  L    SADL L   G   E G+ + V+        PP         GR P  LS   GG++AL   AF+ A+ S    PLC+LDEV+A LDETN A    LL       Q   V+HH      +D +  V + + GVSR+
Sbjct:  994 KGRLAAFGAVNLGAIDE--FRRVSERRDFLSAQRADVESACRDLRRVIQETDGQMESMFRATLTAVRSSFRQLFRRLFGGGSADLTLSDPGRPLESGVEIAVQ--------PP---------GRRPHNLSLLSGGEKALTASAFLFAMLSVNPSPLCVLDEVEATLDETNAARFVSLLRDFTSRTQFIIVTHHKVTMEAADVLYGVTMEENGVSRL 1190          
BLAST of mRNA_H-elongata_contig17601.4596.1 vs. uniprot
Match: A0A7C4JIT1_9BACT (Chromosome segregation protein SMC n=1 Tax=Candidatus Acetothermia bacterium TaxID=2053493 RepID=A0A7C4JIT1_9BACT)

HSP 1 Score: 73.6 bits (179), Expect = 1.700e-11
Identity = 69/225 (30.67%), Postives = 108/225 (48.00%), Query Frame = 0
Query:    2 ILSSELRALRRRSGEKDRRSGGPAVDTGAVDEVTFRQRQAKVGVLKQQLQSVLEGTRQLEAGVIACEGRMHEANEVCYAVVRAELRTLFGALCRNKSADLVLEGTKFEEGLRLVVRNEPAGATTPPVAPAATTEVGRSPQELSGGQQALLGLAFVLALASYQAPPLCLLDEVDAALDETNQAAAARLLAMRFKEAQAFCVSHHSDFHRQSDKIIAVEICDGVSRV 226
            +L + LR +     E++  + GP V+  A++E  + Q  A++  +K ++Q++ +   ++E  +   E +  E        V A+L  LF  L     A L L       G  L+++    G               R    LSGG++AL+ +AFVLALA+ +  P  LLDEVDAALD  N    ARLL    + +Q   VSH+ +  R +D+I  V +  G S V
Sbjct:  324 VLQARLRQI-----ERELAALGP-VNLRAIEE--YEQALAELQEIKTRVQTLEKEKEEIERFIAEVERKKREKFVETMEAVSAQLNQLFVRLFGGGEARLSL-AEPGNLGSDLLIQVRLPGKEL------------RVLDALSGGEKALVAIAFVLALAAGKPAPFYLLDEVDAALDRANSERLARLLKEFAQTSQVIVVSHNEELVRHADRIYGVVLRGGASEV 527          
BLAST of mRNA_H-elongata_contig17601.4596.1 vs. uniprot
Match: A0A7V0JVR2_9BACT (SMC_N domain-containing protein n=1 Tax=Candidatus Acetothermia bacterium TaxID=2053493 RepID=A0A7V0JVR2_9BACT)

HSP 1 Score: 72.4 bits (176), Expect = 2.320e-11
Identity = 56/172 (32.56%), Postives = 80/172 (46.51%), Query Frame = 0
Query:   58 RQLEAGVIACEGRMHEANEVCYAVVRAELRTLFGALCRNKSADLVLEGT-KFEEGLRLVVRNEPAGATTPPVAPAATTEVGRSPQELSGGQQALLGLAFVLALASYQAPPLCLLDEVDAALDETNQAAAARLLAMRFKEAQAFCVSHHSDFHRQSDKIIAVEICDGVSRVRA 228
            R++E  +   EG+     +     V AEL  +F  L     A L LE       GLR+ VR                         LSGG++AL+ +AFVLAL++ +  P  +LDE DAALD  N    A LL    +++Q   VSH+ +  R +D++  V +  G SRV A
Sbjct:  155 REIEEFIAEVEGKKRRRFQETLEAVSAELDRIFKVLFGGGEAKLSLESPGDLSSGLRIQVRLPGKELVLL--------------DALSGGERALVAIAFVLALSAGRPAPFYILDEADAALDRPNSERLAGLLREIARDSQVIVVSHNEELVRHADRVYGVTLRAGASRVLA 312          
BLAST of mRNA_H-elongata_contig17601.4596.1 vs. uniprot
Match: A0A7C4H4S5_9BACT (SMC_N domain-containing protein n=1 Tax=Candidatus Acetothermia bacterium TaxID=2053493 RepID=A0A7C4H4S5_9BACT)

HSP 1 Score: 69.7 bits (169), Expect = 5.030e-11
Identity = 62/197 (31.47%), Postives = 94/197 (47.72%), Query Frame = 0
Query:   30 AVDEVTFRQRQAKVGVLKQQLQSVLEGTRQLEAGVIACEGRMHEANEVCYAVVRAELRTLFGALCRNKSADLVLEGTKFEEGLRLVVRNEPAGATTPPVAPAATTEVGRSPQELSGGQQALLGLAFVLALASYQAPPLCLLDEVDAALDETNQAAAARLLAMRFKEAQAFCVSHHSDFHRQSDKIIAVEICDGVSRV 226
            A++E  + Q  A++  +K ++Q++ +   ++E  +   E +  E        V A+L  LF  L     A L L       G  L+++    G               R    LSGG++AL+ +AFVLALA+ +  P  LLDEVDAALD  N    ARLL    + +Q   VSH+ +  R +D+I  V +  G S V
Sbjct:    8 AIEE--YEQALAELQEIKTRVQTLEKEKEEIERFIAEVERKKREKFVETMEAVSAQLNHLFVRLFGGGEARLSL-AEPGNLGSDLLIQVRLPGKEL------------RVLDALSGGEKALVAIAFVLALAAGKPAPFYLLDEVDAALDRANSERLARLLKEFAQTSQVIVVSHNEELVRHADRIYGVVLRGGASEV 189          
BLAST of mRNA_H-elongata_contig17601.4596.1 vs. uniprot
Match: A0A1P8JW63_9BURK (Chromosome partition protein Smc n=1 Tax=Rhodoferax koreense TaxID=1842727 RepID=A0A1P8JW63_9BURK)

HSP 1 Score: 72.4 bits (176), Expect = 5.120e-11
Identity = 60/206 (29.13%), Postives = 98/206 (47.57%), Query Frame = 0
Query:   25 AVDTGAVDEVTFRQRQAKVGVLKQQLQSVLEGTRQLEAGVIACEGRMHEANEVCYAVVRAELRTLFGALCRNKSADLVLEGTKF-EEGLRLVVRNEPAGATTPPVAPAATTEVGRSPQELSGGQQALLGLAFVLALASYQAPPLCLLDEVDAALDETNQAAAARLLAMRFKEAQAFCVSHHSDFHRQSDKIIAVEICD-GVSRVRA 228
            AV+  A+DE+T  + + +   L  Q   ++E    LE  +   +G   E     +  V A    +F  L    +A LV+ G +  + G+++V   +P G     +              LSGG++AL  +A V A+      P CLLDEVDA LD+ N    A+L+A   K+ Q   +SH+      ++++I V + + GVSR+ A
Sbjct:  973 AVNLAALDELTVARERKQF--LDAQTADLVEAMTTLEDAIRKIDGETRELLSGTFNTVNAHFGKMFPELFGGGNARLVITGDEILDSGVQVVA--QPPGKKNQTI------------HLLSGGEKALTAIALVFAIFQLNPAPFCLLDEVDAPLDDANTERYAKLVASMSKQTQFLFISHNKIAMEMAEQLIGVTMQEQGVSRIVA 1162          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17601.4596.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JDH3_9PHAE1.190e-8864.11SMC_N domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FQC9_ECTSI1.190e-8362.02SMC_N domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A836CK59_9STRA4.690e-3139.42P-loop containing nucleoside triphosphate hydrolas... [more]
F0WC70_9STRA7.850e-2334.83Chromosome segregation protein Smc putative n=1 Ta... [more]
A0A024GMI1_9STRA1.510e-1630.48SMC_N domain-containing protein n=1 Tax=Albugo can... [more]
A0A3C0FAG6_9FIRM3.580e-1433.80Chromosome partition protein Smc n=1 Tax=Clostridi... [more]
A0A7C4JIT1_9BACT1.700e-1130.67Chromosome segregation protein SMC n=1 Tax=Candida... [more]
A0A7V0JVR2_9BACT2.320e-1132.56SMC_N domain-containing protein n=1 Tax=Candidatus... [more]
A0A7C4H4S5_9BACT5.030e-1131.47SMC_N domain-containing protein n=1 Tax=Candidatus... [more]
A0A1P8JW63_9BURK5.120e-1129.13Chromosome partition protein Smc n=1 Tax=Rhodofera... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003395RecF/RecN/SMC, N-terminalPFAMPF02463SMC_Ncoord: 139..219
e-value: 1.8E-21
score: 76.6
NoneNo IPR availableGENE3D3.40.50.300coord: 68..228
e-value: 3.3E-29
score: 103.6
NoneNo IPR availablePANTHERPTHR43941FAMILY NOT NAMEDcoord: 35..227
NoneNo IPR availablePANTHERPTHR43941:SF1STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 2coord: 35..227
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 36..224

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17601contigH-elongata_contig17601:5614..7240 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17601.4596.1mRNA_H-elongata_contig17601.4596.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig17601 5614..7240 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig17601.4596.1 ID=prot_H-elongata_contig17601.4596.1|Name=mRNA_H-elongata_contig17601.4596.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=229bp
KILSSELRALRRRSGEKDRRSGGPAVDTGAVDEVTFRQRQAKVGVLKQQL
QSVLEGTRQLEAGVIACEGRMHEANEVCYAVVRAELRTLFGALCRNKSAD
LVLEGTKFEEGLRLVVRNEPAGATTPPVAPAATTEVGRSPQELSGGQQAL
LGLAFVLALASYQAPPLCLLDEVDAALDETNQAAAARLLAMRFKEAQAFC
VSHHSDFHRQSDKIIAVEICDGVSRVRA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003395RecF/RecN/SMC_N
IPR027417P-loop_NTPase