mRNA_H-elongata_contig175151.4561.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig175151.4561.1 vs. uniprot
Match: A0A6P0N5L4_9CYAN (Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0N5L4_9CYAN) HSP 1 Score: 184 bits (466), Expect = 3.300e-50 Identity = 89/180 (49.44%), Postives = 120/180 (66.67%), Query Frame = 1
Query: 1 MENLFEEATVKAVIKKANRQSAAGSSGLRYSHSQVALCDELVEDLAAFAALVFFSRVLPQVFWTLHTSANLSALGKKARPVACGDVLRRVFGAVSCRRYGRKLADYFQPWDQYGVAVSGGVDIMVLTATLGFEDSCTILSYDRQTAFNSIYRHRFLPALAEIVPSMVPYAFNLYAREPPK 540
+E F TV A I++ N Q + G SGLR+S Q +L EL E +A +++F LP FW LHTSANLSA+G K RP+A GD+ RR+ G V CR+YG LA++F+P QYGVAV GG +++ A L + +L+YD + AFNS+ R LPALA+++P M+PYA N+YAREPPK
Sbjct: 1154 VEEPFATETVTATIRRGNPQGSPGPSGLRFSLLQSSLTPELCEAIAKLCSVIFDGSHLPDSFWQLHTSANLSAIGDKCRPIAVGDLFRRIVGGVICRQYGPSLAEHFEPQGQYGVAVPGGTELLAARAFLAHQKGQCLLAYDARNAFNSMKRSAILPALADLIPPMLPYATNIYAREPPK 1333
BLAST of mRNA_H-elongata_contig175151.4561.1 vs. uniprot
Match: A0A6H5KQ62_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ62_9PHAE) HSP 1 Score: 151 bits (382), Expect = 7.860e-41 Identity = 83/178 (46.63%), Postives = 109/178 (61.24%), Query Frame = 1
Query: 13 FEEATVKAVIKKANRQSAAGSSGLRYSHSQVA-LCDELVEDLAAFAALVFF-SRVLPQVFWTLHTSANLSALGKKARPVACGDVLRRVFGAVSCRRYGRKLADYFQPWDQYGVAVSGGVDIMVLTATLGFEDSCTILSYDRQTAFNSIYRHRFLPALAEIVPSMVPYAFNLYAREPPK 540
FE +K +KKAN QSA G GLR+S+ Q + D E LA F+ VF+ LP FW LHTSANLSALG+K RP+A G VLRR+ CR+Y +A+ F+ +Q+G V GGV+I+ TA L + TILS+D + A+NS+ R LPA+A P +V Y N+YAR K
Sbjct: 120 FEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAK 297
BLAST of mRNA_H-elongata_contig175151.4561.1 vs. uniprot
Match: A0A6H5LN63_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN63_9PHAE) HSP 1 Score: 152 bits (385), Expect = 2.360e-39 Identity = 83/178 (46.63%), Postives = 109/178 (61.24%), Query Frame = 1
Query: 13 FEEATVKAVIKKANRQSAAGSSGLRYSHSQVA-LCDELVEDLAAFAALVFF-SRVLPQVFWTLHTSANLSALGKKARPVACGDVLRRVFGAVSCRRYGRKLADYFQPWDQYGVAVSGGVDIMVLTATLGFEDSCTILSYDRQTAFNSIYRHRFLPALAEIVPSMVPYAFNLYAREPPK 540
FE +K +KKAN QSA G GLR+S+ Q + D E LA F+ VF+ LP FW LHTSANLSALG+K RP+A G VLRR+ CR+Y +A+ F+ +Q+G V GGV+I+ TA L + TILS+D + A+NS+ R LPA+A P +V Y N+YAR K
Sbjct: 120 FEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDSFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAK 297
BLAST of mRNA_H-elongata_contig175151.4561.1 vs. uniprot
Match: A0A6H5JCM0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM0_9PHAE) HSP 1 Score: 151 bits (382), Expect = 5.330e-39 Identity = 83/178 (46.63%), Postives = 109/178 (61.24%), Query Frame = 1
Query: 13 FEEATVKAVIKKANRQSAAGSSGLRYSHSQVA-LCDELVEDLAAFAALVFF-SRVLPQVFWTLHTSANLSALGKKARPVACGDVLRRVFGAVSCRRYGRKLADYFQPWDQYGVAVSGGVDIMVLTATLGFEDSCTILSYDRQTAFNSIYRHRFLPALAEIVPSMVPYAFNLYAREPPK 540
FE +K +KKAN QSA G GLR+S+ Q + D E LA F+ VF+ LP FW LHTSANLSALG+K RP+A G VLRR+ CR+Y +A+ F+ +Q+G V GGV+I+ TA L + TILS+D + A+NS+ R LPA+A P +V Y N+YAR K
Sbjct: 120 FEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAK 297
BLAST of mRNA_H-elongata_contig175151.4561.1 vs. uniprot
Match: A0A6H5KGJ4_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ4_9PHAE) HSP 1 Score: 149 bits (377), Expect = 9.730e-39 Identity = 82/178 (46.07%), Postives = 108/178 (60.67%), Query Frame = 1
Query: 13 FEEATVKAVIKKANRQSAAGSSGLRYSHSQVA-LCDELVEDLAAFAALVFF-SRVLPQVFWTLHTSANLSALGKKARPVACGDVLRRVFGAVSCRRYGRKLADYFQPWDQYGVAVSGGVDIMVLTATLGFEDSCTILSYDRQTAFNSIYRHRFLPALAEIVPSMVPYAFNLYAREPPK 540
FE +K +KKAN QSA G GLR+S+ Q + D E LA F+ VF+ LP FW LHTSANLSALG+K RP+A G VLRR+ C +Y +A+ F+ +Q+G V GGV+I+ TA L + TILS+D + A+NS+ R LPA+A P +V Y N+YAR K
Sbjct: 120 FEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCHQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAK 297
BLAST of mRNA_H-elongata_contig175151.4561.1 vs. uniprot
Match: A0A6H5L3H3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H3_9PHAE) HSP 1 Score: 124 bits (310), Expect = 2.010e-32 Identity = 66/145 (45.52%), Postives = 89/145 (61.38%), Query Frame = 1
Query: 109 LCDELVEDLAAFAALVFF-SRVLPQVFWTLHTSANLSALGKKARPVACGDVLRRVFGAVSCRRYGRKLADYFQPWDQYGVAVSGGVDIMVLTATLGFEDSCTILSYDRQTAFNSIYRHRFLPALAEIVPSMVPYAFNLYAREPPK 540
+ D+ E LA F+ VF+ LP +FW TSA+LSALG+K RP+A G VLRR+ CR+Y + +AD F+ +Q+G V GGV+I+ TA L + TILS+D + A+NSI R L A+A P +V Y NLYAR K
Sbjct: 1 MSDDFSETLADFSYKVFYYGDELPDLFWGFQTSASLSALGEKKRPIAVGGVLRRIISGSFCRQYKQGIADIFEASNQFGGGVPGGVEIVASTAALSHQQGSTILSFDGRNAYNSILRSSILTAVATHTPHLVKYFGNLYARIKAK 145
BLAST of mRNA_H-elongata_contig175151.4561.1 vs. uniprot
Match: A0A6H5KSY9_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY9_9PHAE) HSP 1 Score: 126 bits (317), Expect = 9.350e-31 Identity = 66/145 (45.52%), Postives = 88/145 (60.69%), Query Frame = 1
Query: 109 LCDELVEDLAAFAALVFF-SRVLPQVFWTLHTSANLSALGKKARPVACGDVLRRVFGAVSCRRYGRKLADYFQPWDQYGVAVSGGVDIMVLTATLGFEDSCTILSYDRQTAFNSIYRHRFLPALAEIVPSMVPYAFNLYAREPPK 540
+ D E LA F+ VF+ LP FW LHTSANLSALG+K RP+A G VLRR+ CR+Y +A+ F+ +Q+G V GGV+I+ TA L + TILS+D + A+NS+ R LPA+A P + Y N+YAR K
Sbjct: 1 MSDYFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLAKYFGNIYARTKAK 145
BLAST of mRNA_H-elongata_contig175151.4561.1 vs. uniprot
Match: A0A6H5K1H0_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H0_9PHAE) HSP 1 Score: 124 bits (311), Expect = 2.030e-29 Identity = 65/145 (44.83%), Postives = 88/145 (60.69%), Query Frame = 1
Query: 109 LCDELVEDLAAFAALVFF-SRVLPQVFWTLHTSANLSALGKKARPVACGDVLRRVFGAVSCRRYGRKLADYFQPWDQYGVAVSGGVDIMVLTATLGFEDSCTILSYDRQTAFNSIYRHRFLPALAEIVPSMVPYAFNLYAREPPK 540
+ D E LA F+ VF+ LP W LHTSANLSALG+K RP+A G VLRR+ R+Y +A+ F+ +Q+G V GGV+I+ TA L + TILS+D + A+NS+ R LPA+A + P +V Y N+YAR K
Sbjct: 1 MSDSFTETLADFSFKVFYYGDELPDFLWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFYRQYKGGIANIFEAANQFGGGVPGGVEIVASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATLTPHLVKYFGNIYARTKAK 145
BLAST of mRNA_H-elongata_contig175151.4561.1 vs. uniprot
Match: A0A6H5KQE6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQE6_9PHAE) HSP 1 Score: 100 bits (249), Expect = 1.850e-23 Identity = 57/137 (41.61%), Postives = 79/137 (57.66%), Query Frame = 1
Query: 109 LCDELVEDLAAFAALVFF-SRVLPQVFWTLHTSANLSALGKKARPVACGDVLRRVFGAVS------------CRRYGRKLADYFQPWDQYGVAVSGGVDIMVLTATLGFEDSCTILSYDRQTAFNSIYRHRFLPALA 480
+ D+ LA F+ VF+ LP +FW LHTSA+LSALG+K RP+A G VLRR+ CR+Y + +AD F+ +Q+G V GGV+I+ TA + TILS+D + A+NSI R L A+A
Sbjct: 1 MSDDFSATLADFSHKVFYYGDELPDLFWGLHTSASLSALGEKKRPIAVGGVLRRIIXIXXXXXXXXXISGSFCRQYKQGIADIFEASNQFGGGVPGGVEIVASTAAPSHQQGSTILSFDGKNAYNSILRSSILTAVA 137
BLAST of mRNA_H-elongata_contig175151.4561.1 vs. uniprot
Match: A0A6H5KT19_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT19_9PHAE) HSP 1 Score: 81.3 bits (199), Expect = 7.580e-15 Identity = 52/172 (30.23%), Postives = 86/172 (50.00%), Query Frame = 1
Query: 4 ENLFEEATVKAVIKKANRQSAAGSSGLRYSHSQVALCDELVEDLAAFAALVFFSRVL------PQVFWTLHTSANLSALGKKARPVACGDVLRRVFGAVSCRRYGRKLADYFQPWDQYGVAVSGGVDIMVLTATLGFEDSCTILSYDRQTAFNSIYRHRFLPALAEIVPSMV 501
E F+ + VI + S AG+ G R+SH + + ++ + + A + R++ P FWTL ++L ALG+K RPV G RR+ A + R + KL + F+ DQ+GVAV+GGV+ + + A L + ++ D N+ R + A+ VP +V
Sbjct: 42 ETEFDPQVLLQVINSRSSNSGAGNDGQRFSHLKSIVNTKIGREEFSNAMSSLWRRLINDPNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVTGGVEQVAMDAQLVDQTGHWVVQTDCSNGLNTGKRTAIMAQAAKSVPDLV 213 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig175151.4561.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig175151.4561.1 >prot_H-elongata_contig175151.4561.1 ID=prot_H-elongata_contig175151.4561.1|Name=mRNA_H-elongata_contig175151.4561.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=194bp MENLFEEATVKAVIKKANRQSAAGSSGLRYSHSQVALCDELVEDLAAFAAback to top mRNA from alignment at H-elongata_contig175151:336..917+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig175151.4561.1 ID=mRNA_H-elongata_contig175151.4561.1|Name=mRNA_H-elongata_contig175151.4561.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=582bp|location=Sequence derived from alignment at H-elongata_contig175151:336..917+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig175151:336..917+ >mRNA_H-elongata_contig175151.4561.1 ID=mRNA_H-elongata_contig175151.4561.1|Name=mRNA_H-elongata_contig175151.4561.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1164bp|location=Sequence derived from alignment at H-elongata_contig175151:336..917+ (Himanthalia elongata Himel1 dioecious)back to top |