prot_H-elongata_contig174873.4551.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig174873.4551.1
Unique Nameprot_H-elongata_contig174873.4551.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length170
Homology
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BLAST of mRNA_H-elongata_contig174873.4551.1 vs. uniprot
Match: UPI00103F0D66 (uncharacterized protein LOC114362197 n=1 Tax=Ostrinia furnacalis TaxID=93504 RepID=UPI00103F0D66)

HSP 1 Score: 53.5 bits (127), Expect = 9.650e-6
Identity = 31/120 (25.83%), Postives = 58/120 (48.33%), Query Frame = 0 
Query:   44 ADPDQLRTAHQAWVSLIATCNGVAFDIVQGAETPEEVWSKLVQYYHASGLKERRRLTVNLYTMKMKLGEHPRKFLLRVDQMVKELERVERPVDPKDVDIVILNGLTPQYDAEVRMLETSS 163
            AD D  +   +A   +  +        ++ A++  E W+ L + Y   GL  R  L  +L+  K+        +L ++ ++  +L  +E P+D + V ++IL+GLT  YD  +  +E SS
Sbjct:   44 ADEDNKKKDDKALARIALSVAPTIIPHIRTAKSAHEAWTILQKTYEGRGLSRRLGLLRSLFNTKLSECSSMEVYLNKIKEISHQLSEIESPLDDELVAVIILSGLTDDYDPLIMAIEHSS 163
[Close]
BLAST of mRNA_H-elongata_contig174873.4551.1 vs. uniprot
Match: UPI00103FEA55 (uncharacterized protein LOC114361313 n=2 Tax=Ostrinia furnacalis TaxID=93504 RepID=UPI00103FEA55)

HSP 1 Score: 53.9 bits (128), Expect = 2.020e-5
Identity = 31/120 (25.83%), Postives = 58/120 (48.33%), Query Frame = 0 
Query:   44 ADPDQLRTAHQAWVSLIATCNGVAFDIVQGAETPEEVWSKLVQYYHASGLKERRRLTVNLYTMKMKLGEHPRKFLLRVDQMVKELERVERPVDPKDVDIVILNGLTPQYDAEVRMLETSS 163
            AD D  +   +A   +  +        ++ A++  E W+ L + Y   GL  R  L  +L+  K+        +L ++ ++  +L  +E P+D + V ++IL+GLT  YD  +  +E SS
Sbjct:   44 ADEDNKKKDDKALARIALSVAPTVIPHIRTAKSAHEAWTILQKTYEGRGLSRRLGLLRSLFNTKLSECSSMEVYLNKIKEISHQLSEIESPLDDELVAVIILSGLTDDYDPLIMAIEHSS 163
[Close]
BLAST of mRNA_H-elongata_contig174873.4551.1 vs. uniprot
Match: A0A2H1VB05_SPOFR (SFRICE_041671 (Fragment) n=1 Tax=Spodoptera frugiperda TaxID=7108 RepID=A0A2H1VB05_SPOFR)

HSP 1 Score: 51.2 bits (121), Expect = 4.100e-5
Identity = 25/93 (26.88%), Postives = 50/93 (53.76%), Query Frame = 0 
Query:   71 VQGAETPEEVWSKLVQYYHASGLKERRRLTVNLYTMKMKLGEHPRKFLLRVDQMVKELERVERPVDPKDVDIVILNGLTPQYDAEVRMLETSS 163
            ++ A++  E W  L + Y   GL  R  L  +L++ K+        +L ++ ++  +L  +E P+D + V +++L+GLT  YD  +  +E S+
Sbjct:   43 IRTAKSAHEAWKILQKAYEGRGLSRRLGLLRSLFSTKLSENSSMEVYLNKIKEISHQLNEIESPLDDEFVAVIMLSGLTDDYDPLIMAIEHST 135
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig174873.4551.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
UPI00103F0D669.650e-625.83uncharacterized protein LOC114362197 n=1 Tax=Ostri... [more]
UPI00103FEA552.020e-525.83uncharacterized protein LOC114361313 n=2 Tax=Ostri... [more]
A0A2H1VB05_SPOFR4.100e-526.88SFRICE_041671 (Fragment) n=1 Tax=Spodoptera frugip... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 66..166
e-value: 1.1E-14
score: 54.3
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..23
score: 0.545

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig174873contigH-elongata_contig174873:373..882 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig174873.4551.1mRNA_H-elongata_contig174873.4551.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig174873 373..882 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig174873.4551.1 ID=prot_H-elongata_contig174873.4551.1|Name=mRNA_H-elongata_contig174873.4551.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=170bp
PEDWNTWSRVHLAQLSALGCAAALTAEDGNDLKTGSSDFDNDEADPDQLR
TAHQAWVSLIATCNGVAFDIVQGAETPEEVWSKLVQYYHASGLKERRRLT
VNLYTMKMKLGEHPRKFLLRVDQMVKELERVERPVDPKDVDIVILNGLTP
QYDAEVRMLETSSDWPTRD*
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