mRNA_H-elongata_contig174873.4551.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig174873.4551.1
Unique NamemRNA_H-elongata_contig174873.4551.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig174873.4551.1 vs. uniprot
Match: UPI00103F0D66 (uncharacterized protein LOC114362197 n=1 Tax=Ostrinia furnacalis TaxID=93504 RepID=UPI00103F0D66)

HSP 1 Score: 53.5 bits (127), Expect = 9.650e-6
Identity = 31/120 (25.83%), Postives = 58/120 (48.33%), Query Frame = 1 
Query:  130 ADPDQLRTAHQAWVSLIATCNGVAFDIVQGAETPEEVWSKLVQYYHASGLKERRRLTVNLYTMKMKLGEHPRKFLLRVDQMVKELERVERPVDPKDVDIVILNGLTPQYDAEVRMLETSS 489
            AD D  +   +A   +  +        ++ A++  E W+ L + Y   GL  R  L  +L+  K+        +L ++ ++  +L  +E P+D + V ++IL+GLT  YD  +  +E SS
Sbjct:   44 ADEDNKKKDDKALARIALSVAPTIIPHIRTAKSAHEAWTILQKTYEGRGLSRRLGLLRSLFNTKLSECSSMEVYLNKIKEISHQLSEIESPLDDELVAVIILSGLTDDYDPLIMAIEHSS 163
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BLAST of mRNA_H-elongata_contig174873.4551.1 vs. uniprot
Match: UPI00103FEA55 (uncharacterized protein LOC114361313 n=2 Tax=Ostrinia furnacalis TaxID=93504 RepID=UPI00103FEA55)

HSP 1 Score: 53.9 bits (128), Expect = 2.020e-5
Identity = 31/120 (25.83%), Postives = 58/120 (48.33%), Query Frame = 1 
Query:  130 ADPDQLRTAHQAWVSLIATCNGVAFDIVQGAETPEEVWSKLVQYYHASGLKERRRLTVNLYTMKMKLGEHPRKFLLRVDQMVKELERVERPVDPKDVDIVILNGLTPQYDAEVRMLETSS 489
            AD D  +   +A   +  +        ++ A++  E W+ L + Y   GL  R  L  +L+  K+        +L ++ ++  +L  +E P+D + V ++IL+GLT  YD  +  +E SS
Sbjct:   44 ADEDNKKKDDKALARIALSVAPTVIPHIRTAKSAHEAWTILQKTYEGRGLSRRLGLLRSLFNTKLSECSSMEVYLNKIKEISHQLSEIESPLDDELVAVIILSGLTDDYDPLIMAIEHSS 163
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BLAST of mRNA_H-elongata_contig174873.4551.1 vs. uniprot
Match: A0A2H1VB05_SPOFR (SFRICE_041671 (Fragment) n=1 Tax=Spodoptera frugiperda TaxID=7108 RepID=A0A2H1VB05_SPOFR)

HSP 1 Score: 51.2 bits (121), Expect = 4.100e-5
Identity = 25/93 (26.88%), Postives = 50/93 (53.76%), Query Frame = 1 
Query:  211 VQGAETPEEVWSKLVQYYHASGLKERRRLTVNLYTMKMKLGEHPRKFLLRVDQMVKELERVERPVDPKDVDIVILNGLTPQYDAEVRMLETSS 489
            ++ A++  E W  L + Y   GL  R  L  +L++ K+        +L ++ ++  +L  +E P+D + V +++L+GLT  YD  +  +E S+
Sbjct:   43 IRTAKSAHEAWKILQKAYEGRGLSRRLGLLRSLFSTKLSENSSMEVYLNKIKEISHQLNEIESPLDDEFVAVIMLSGLTDDYDPLIMAIEHST 135
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig174873.4551.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
UPI00103F0D669.650e-625.83uncharacterized protein LOC114362197 n=1 Tax=Ostri... [more]
UPI00103FEA552.020e-525.83uncharacterized protein LOC114361313 n=2 Tax=Ostri... [more]
A0A2H1VB05_SPOFR4.100e-526.88SFRICE_041671 (Fragment) n=1 Tax=Spodoptera frugip... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig174873contigH-elongata_contig174873:373..882 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size510
Cds size510
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930014.8962424-CDS-H-elongata_contig174873:372..8821622930014.8962424-CDS-H-elongata_contig174873:372..882Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig174873 373..882 +
1691679246.4767256-CDS-H-elongata_contig174873:372..8821691679246.4767256-CDS-H-elongata_contig174873:372..882Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig174873 373..882 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig174873.4551.1prot_H-elongata_contig174873.4551.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig174873 373..882 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig174873.4551.1

>prot_H-elongata_contig174873.4551.1 ID=prot_H-elongata_contig174873.4551.1|Name=mRNA_H-elongata_contig174873.4551.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=170bp
PEDWNTWSRVHLAQLSALGCAAALTAEDGNDLKTGSSDFDNDEADPDQLR
TAHQAWVSLIATCNGVAFDIVQGAETPEEVWSKLVQYYHASGLKERRRLT
VNLYTMKMKLGEHPRKFLLRVDQMVKELERVERPVDPKDVDIVILNGLTP
QYDAEVRMLETSSDWPTRD*
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mRNA from alignment at H-elongata_contig174873:373..882+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig174873.4551.1 ID=mRNA_H-elongata_contig174873.4551.1|Name=mRNA_H-elongata_contig174873.4551.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=510bp|location=Sequence derived from alignment at H-elongata_contig174873:373..882+ (Himanthalia elongata Himel1 dioecious)
CCCGAGGACTGGAACACATGGTCCAGGGTACACCTAGCGCAACTCTCCGC
ACTTGGATGCGCTGCCGCGCTGACAGCGGAAGATGGCAACGACCTGAAGA
CCGGCAGTAGCGACTTCGACAACGACGAGGCCGACCCAGATCAGCTGAGA
ACGGCGCATCAAGCCTGGGTATCGCTGATAGCCACGTGCAACGGAGTAGC
GTTCGACATCGTCCAAGGAGCTGAGACGCCCGAGGAAGTGTGGTCAAAGC
TCGTGCAATACTACCACGCCAGCGGCCTCAAGGAACGACGCCGCCTCACT
GTAAATTTATATACGATGAAAATGAAACTCGGCGAGCATCCACGCAAATT
TTTGCTGCGGGTGGACCAGATGGTCAAGGAACTGGAAAGGGTGGAACGAC
CGGTGGACCCGAAGGACGTGGACATCGTAATTCTGAACGGCCTCACCCCC
CAGTACGACGCCGAGGTTCGAATGCTGGAGACCTCATCGGACTGGCCCAC
TCGAGATTGA
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Coding sequence (CDS) from alignment at H-elongata_contig174873:373..882+

>mRNA_H-elongata_contig174873.4551.1 ID=mRNA_H-elongata_contig174873.4551.1|Name=mRNA_H-elongata_contig174873.4551.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1020bp|location=Sequence derived from alignment at H-elongata_contig174873:373..882+ (Himanthalia elongata Himel1 dioecious)
CCCGAGGACTGGAACACATGGTCCAGGGTACACCTAGCGCAACTCTCCGC
ACTTGGATGCGCTGCCGCGCTGACAGCGGAAGATGGCAACGACCTGAAGA
CCGGCAGTAGCGACTTCGACAACGACGAGGCCGACCCAGATCAGCTGAGA
ACGGCGCATCAAGCCTGGGTATCGCTGATAGCCACGTGCAACGGAGTAGC
GTTCGACATCGTCCAAGGAGCTGAGACGCCCGAGGAAGTGTGGTCAAAGC
TCGTGCAATACTACCACGCCAGCGGCCTCAAGGAACGACGCCGCCTCACT
GTAAATTTATATACGATGAAAATGAAACTCGGCGAGCATCCACGCAAATT
TTTGCTGCGGGTGGACCAGATGGTCAAGGAACTGGAAAGGGTGGAACGAC
CGGTGGACCCGAAGGACGTGGACATCGTAATTCTGAACGGCCTCACCCCC
CAGTACGACGCCGAGGTTCGAATGCTGGAGACCTCATCGGACTGGCCCAC
TCGAGATTGACCCGAGGACTGGAACACATGGTCCAGGGTACACCTAGCGC
AACTCTCCGCACTTGGATGCGCTGCCGCGCTGACAGCGGAAGATGGCAAC
GACCTGAAGACCGGCAGTAGCGACTTCGACAACGACGAGGCCGACCCAGA
TCAGCTGAGAACGGCGCATCAAGCCTGGGTATCGCTGATAGCCACGTGCA
ACGGAGTAGCGTTCGACATCGTCCAAGGAGCTGAGACGCCCGAGGAAGTG
TGGTCAAAGCTCGTGCAATACTACCACGCCAGCGGCCTCAAGGAACGACG
CCGCCTCACTGTAAATTTATATACGATGAAAATGAAACTCGGCGAGCATC
CACGCAAATTTTTGCTGCGGGTGGACCAGATGGTCAAGGAACTGGAAAGG
GTGGAACGACCGGTGGACCCGAAGGACGTGGACATCGTAATTCTGAACGG
CCTCACCCCCCAGTACGACGCCGAGGTTCGAATGCTGGAGACCTCATCGG
ACTGGCCCACTCGAGATTGA
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