mRNA_H-elongata_contig10531.441.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10531.441.1
Unique NamemRNA_H-elongata_contig10531.441.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig10531.441.1 vs. uniprot
Match: D8LFT7_ECTSI (Plastid phosphoglycerate mutase protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFT7_ECTSI)

HSP 1 Score: 430 bits (1106), Expect = 2.430e-140
Identity = 218/322 (67.70%), Postives = 260/322 (80.75%), Query Frame = 1
Query:  244 GRVLFAPGGLVVAMTAARKGIARAFSFGGLRGAINLQHPFGKRFFRAASAVAEP---------SNATPPETPLPPPGDN-DLVSFYLLRHGQTNFNAIGRIQGTLDSSVLTEQGISQAVEAGKTLASAEDLELGPTVIVSPMTRARQTLEYVREELQKAK--RDFEAVEIVRDIREIELFEWEGELKDDIIRDNPDDYAAWLADPSNFNFSGRYPAKDLWARAGKAWDQIRSLQTIQGQTSTLLVAHNAINQALVFTAFGCDTTYFRKLAWPNCAVLELQWRKGAERAERYRWVIPESSPFVEAADAARILKTSANDNRFTL 1173
            GR   APGG ++A+  ARK   RAF FGG           GKR FR+ +A +           + ATPPE+P PP GD+ +L SF+LLRHGQTNFNAIGRIQGTLDSS+LTE+GISQA+EAGKTLAS  DL+LGPTV+VSPM RA+QTLE VR+EL+K++  +DFE VEIV DIREIELFEW+G+LK+DII++NP+ YA+W+ADPSNFNFSGRYPA+DLW RA  AWDQIRSLQ+IQ Q  TL+VAHNAINQAL++TA GCDTTYFRKL+WPNCAVLELQWR+G  RAERYRWV+PE+S FVEAADAAR+LK   +DNR+TL
Sbjct:    5 GRPRPAPGGFLIALATARKSFTRAFCFGG-----GSSSSVGKRLFRSTAAESSAKAGTGPRGLATATPPESPFPPAGDDGELESFFLLRHGQTNFNAIGRIQGTLDSSILTEEGISQALEAGKTLASYADLDLGPTVVVSPMGRAQQTLECVRQELRKSEISKDFETVEIVPDIREIELFEWQGQLKEDIIKNNPEQYASWVADPSNFNFSGRYPARDLWKRASNAWDQIRSLQSIQDQPRTLVVAHNAINQALLWTALGCDTTYFRKLSWPNCAVLELQWRRGEARAERYRWVVPEASGFVEAADAARLLKDGEDDNRYTL 321          
BLAST of mRNA_H-elongata_contig10531.441.1 vs. uniprot
Match: Q00GN2_KARBR (Plastid phosphoglycerate mutase protein (Fragment) n=1 Tax=Karenia brevis TaxID=156230 RepID=Q00GN2_KARBR)

HSP 1 Score: 175 bits (444), Expect = 6.460e-45
Identity = 103/238 (43.28%), Postives = 146/238 (61.34%), Query Frame = 1
Query:  466 FYLLRHGQTNFNAIGRIQGTLDSSVLTEQGISQAVEAGKTLASAEDLELGPTVIVSPMTRARQTLEYVREELQKAKRDFEAVEIVRDIREIELFEWEGELKDDIIRDNPDDYAAWLADPSNFNFSGRYPAKDLWARAGKAWDQIRSLQTIQGQTS--TLLVAHNAINQALVFTAFGCDTTYFRKLAWPNCAVLELQWRKGAERAERYRWVIP--ESSPFVEAADAARILKTSANDNRF 1167
            + +LRHG+TNFNA G +QG+ D S LTE+G +QA +AG  LA+  DL +   V VSP+TRA  TLE V + L  +    EA+ +  ++REI+L+ WEG+ K+D+ R+ PD Y AW +   +F   G YP  +LW RA +AW  IR+ +  +      TL+V HN I QAL F+A G D +YFR+L++PN   LE  W  G   A R+RW +P  E+S    +A AA +    A+D R+
Sbjct:   99 YLILRHGETNFNAKGILQGSSDISRLTEKGQAQANKAGMELATLSDLPI-EQVFVSPLTRATSTLELVAQSLPCSLP--EAITLP-ELREIDLYSWEGKQKEDLKREMPDTYQAWKSADPDFVVDGHYPLVELWQRAKEAWAAIRASEDGKRDIDGVTLIVCHNGIGQALFFSAIGLDASYFRQLSFPNAGALECDWPLGELHASRWRWRLPLDEASSEWRSATAASL---DASDGRY 329          
BLAST of mRNA_H-elongata_contig10531.441.1 vs. uniprot
Match: A0A7S4I552_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I552_9STRA)

HSP 1 Score: 169 bits (429), Expect = 1.570e-43
Identity = 94/242 (38.84%), Postives = 137/242 (56.61%), Query Frame = 1
Query:  439 PPGDNDLVSFYLLRHGQTNFNAIGRIQGTLDSSVLTEQGISQAVEAGKTLASAEDLEL---GPT--VIVSPMTRARQTLEYVREELQKAKRDFEAVEIVRDIREIELFEWEGELKDDIIRDNPDDYAAW-LADPSNFNFSGRYPAKDLWARAGKAWDQIRSLQTIQGQT-------STLLVAHNAINQALVFTAFGCDTTYFRKLAWPNCAVLELQWRKGAERAERYRWVIPESSPFVEAAD 1125
            PP    L  +++LRHG+T+ NA GRIQG+ D S LTE+G SQA   G  +    D E    GP   V  SP+TRA++TL+ +RE    +    E   ++ ++REI+L++WEG    +I  ++P+ YAAW + D      SG  P  ++WARAG+ W+ IRS   + G+T       STLLV H  + Q L+ +A G D T+FR+  +PNC + E+ W    E A  +RW  P  S  ++  D
Sbjct:   33 PPSSASLHRYFILRHGETDANASGRIQGSADFSRLTERGQSQAARVGSVVFGGSDGEGSIDGPIRHVYASPLTRAQETLQIIREHADPSLIPGEGEIVLDELREIDLYDWEGRHTSEIEENDPEAYAAWTMGDAHGMEVSGCKPIVEMWARAGRVWEIIRSANAVAGRTDSDENPSSTLLVCHGTLGQGLLSSALGLDETHFRRHDFPNCGMAEIVWYHDEEIARNWRWHHPSRSELMQPFD 274          
BLAST of mRNA_H-elongata_contig10531.441.1 vs. uniprot
Match: A0A7S4C0X0_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C0X0_CHRCT)

HSP 1 Score: 163 bits (413), Expect = 2.540e-41
Identity = 102/257 (39.69%), Postives = 138/257 (53.70%), Query Frame = 1
Query:  379 RAASAVAEPSNATPPETPLPPPGDNDLVSFYLLRHGQTNFNAIGRIQGTLDSSVLTEQGISQAVEAGKTLASAEDLELGPTVIVSPMTRARQTLEYVREELQKAKRDFEAVEIVRDIREIELFEWEGELKDDIIRDNPDDYAAWLADPSNFNFSGRYPAKDLWARAGKAWDQIRSLQTIQGQTSTLLVA-HNAINQALVFTAFGCDTTYFRKLAWPNCAVLELQWRKGAER--------------AERYRWVIPESS 1104
            RA+SA  +P     P +  P  G      F +LRHG+TN NA G IQG+ D SVLT++G  QA  AG+ LA          V VSP++RAR TLE  R+       +     ++ D+RE++L++WEG  K D+ R+ PD+Y AW   P  F+ SG+ P  DLWARA   W +I S       + T+LV  H+ I QAL+ TA G D   FR+ A PNC  +EL+W  G                 A R+RW+IP +S
Sbjct:   15 RASSAALQP-----PTSAAPGAG----CKFVILRHGETNHNADGIIQGSSDVSVLTDKGKEQARRAGEQLAELYQEGSISKVFVSPLSRARDTLELCRKTAPLPTGEI----VLADLREVDLWDWEGRNKADLRRERPDEYEAWKGQPLLFSVSGKKPIVDLWARARNVWREIHSQVPEDPSSGTILVVCHSGIGQALLSTALGEDERSFRRRALPNCGAVELEWIDGYVASTDGGVASMDSDCLANRWRWLIPNTS 258          
BLAST of mRNA_H-elongata_contig10531.441.1 vs. uniprot
Match: A0A7S0F1H7_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0F1H7_9CRYP)

HSP 1 Score: 166 bits (420), Expect = 3.990e-41
Identity = 100/238 (42.02%), Postives = 138/238 (57.98%), Query Frame = 1
Query:  466 FYLLRHGQTNFNAIGRIQGTLDSSVLTEQGISQAVEAGKTLASAEDLELGPTVIVSPMTRARQTLEYVREELQKAKRDFEAVEIVRDIREIELFEWEGELKDDIIRDNPDDYAAWLAD-PSNFNF-SGRYPAKDLWARAGKAWDQIRSLQTIQGQTSTLLVAHNAINQALVFTAFGCDTTYFRKLAWPNCAVLELQWRKGAERAERYRWVIPESSP------FVEAADAARILKTSAN 1155
            F +LRHG+TN+NA GRIQG+ D S LTE+G +QA   G  L+         +V VSP+TRAR+TLE     L +      +  ++ D+RE++L+EWEG LK +I    PD Y+ W  + P  F   SG+YP +DLW RA   WD +R   T  G+T TL+VAHN INQAL+ T  G    +FRKL +PNC + E+    G  +A+++RW+ P  S       +    D     KTSA+
Sbjct:  158 FLILRHGKTNYNAEGRIQGSTDFSRLTEEGEAQASSVGGILSEIHI----DSVFVSPLTRARRTLELAEAGLGRNLSG--SAIVLDDLREVDLYEWEGMLKKEIKEMYPDIYSLWRGENPRQFKLDSGKYPIRDLWKRASNVWDVLRRDAT-NGKT-TLIVAHNGINQALLCTTLGLSEEFFRKLEFPNCGIAEVIIPHGQSKAKQWRWLYPTPSEWSYHDMYSAEEDVEETSKTSAS 387          
BLAST of mRNA_H-elongata_contig10531.441.1 vs. uniprot
Match: L1ISC6_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1ISC6_GUITC)

HSP 1 Score: 154 bits (388), Expect = 7.070e-39
Identity = 91/196 (46.43%), Postives = 123/196 (62.76%), Query Frame = 1
Query:  466 FYLLRHGQTNFNAIGRIQGTLDSSVLTEQGISQAVEAGKTLASAEDLELGPTVIVSPMTRARQTLEYVREELQKAKRDFEAVEIVRDIREIELFEWEGELKDDIIRDN-PDDYAAWLAD-PSNFNF-SGRYPAKDLWARAGKAWDQIRSLQTIQGQTSTLLVAHNAINQALVFTAFGCDTTYFRKLAWPNCAVLEL 1044
            F  LRHG+TN+NA GRIQG+ D S LTE+G +QA   G+ L+   D+ +  +V VSP+TRAR TLE       +   D  +  ++ D+RE++L EWEG LK   I++  PD Y+ W  + P  F   SG+YP +DLW RAGK W+ +R      G+TS L+VAHN INQAL+ T  G    YFRKL +PNC + E+
Sbjct:   17 FLFLRHGKTNYNAEGRIQGSTDFSRLTEEGEAQASSVGRILS---DIPID-SVFVSPLTRARMTLELAAAGSGRNLSD--SAMVLDDLREVDLHEWEGMLKKQEIKEMYPDIYSLWRGENPREFKLDSGKYPIRDLWKRAGKVWEVLRR-DAANGKTS-LIVAHNGINQALLCTTLGLSEEYFRKLEFPNCGIAEV 204          
BLAST of mRNA_H-elongata_contig10531.441.1 vs. uniprot
Match: A0A812MB86_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812MB86_9DINO)

HSP 1 Score: 140 bits (354), Expect = 8.130e-34
Identity = 90/229 (39.30%), Postives = 131/229 (57.21%), Query Frame = 1
Query:  466 FYLLRHGQTNFNAIGRIQGTLDS-SVLTEQGISQAVEAGKTLASAEDLELGPTVIVSPMTRARQTLEYVREELQKAKRDFEAVEIVRDIREIELFEWEGELKDDIIRDNPDDYAAWLADPSNFNFSGRYPAKDLWARAGKAWDQIRSLQTIQGQTSTLLVAHNAINQALVFTAFGCDTTYFRKLAWPNCAVLELQWRKGAERAERYRWVIPESSPFVEAADAARILKTS 1149
            F L+RHGQT FNA  R QG++D  SVLT +GISQA E G+ L           V VSP+ RARQTLE  R    +     E    + ++REI+L+EW+G  +D+I  ++P+    W  +  N   SGRY  +DLW R+ +AW ++R +    G+  +L+VAH AI +AL+ TA G     FR LA  N  V+E+ W  G+E   ++R + P+  P+   AD  + +K +
Sbjct:   22 FLLVRHGQTTFNAEKRFQGSMDEGSVLTAKGISQAEELGQWLKGNPVA----AVFVSPLLRARQTLEVARTVAGEVLPPTETK--LSELREIDLYEWQGRTQDEIRAEDPELMRLWKEETWNLQVSGRYVVRDLWRRSIEAWHRMRQVAP-SGEERSLVVAHGAIIKALISTALGLPEQGFRHLAMSNGEVVEVAW-SGSEA--KWRKLHPDKGPWRCLADEEQAMKAN 240          
BLAST of mRNA_H-elongata_contig10531.441.1 vs. uniprot
Match: A0A812LVJ0_9DINO (NEK1 protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812LVJ0_9DINO)

HSP 1 Score: 144 bits (364), Expect = 5.390e-33
Identity = 92/229 (40.17%), Postives = 133/229 (58.08%), Query Frame = 1
Query:  466 FYLLRHGQTNFNAIGRIQGTLDS-SVLTEQGISQAVEAGKTLASAEDLELGPTVIVSPMTRARQTLEYVREELQKAKRDFEAVEIVRDIREIELFEWEGELKDDIIRDNPDDYAAWLADPSNFNFSGRYPAKDLWARAGKAWDQIRSLQTIQGQTSTLLVAHNAINQALVFTAFGCDTTYFRKLAWPNCAVLELQWRKGAERAERYRWVIPESSPFVEAADAARILKTS 1149
            F L+RHGQT FNA  R QG++D  SVLT +GISQA E G+ L           V VSP+ RARQTLE  R    +     E    + ++REI+L+EW+G  +D+I  ++P+    W  +  N   SGRY  +DLW R+ +AW ++R +   +G+TS L+VAH AI +AL+ TA G     FR LA  N  V+E+ W  G+E   ++R + P+  P+   AD  + +K +
Sbjct:  255 FLLVRHGQTTFNAEKRFQGSMDEGSVLTAKGISQAEELGQWLKGNPVA----AVFVSPLLRARQTLEVARTVAGEVLPPTETK--LSELREIDLYEWQGRTQDEIRAEDPEFIRLWKEETWNLQVSGRYVVRDLWRRSIEAWHRMRQVAPSRGETS-LVVAHGAIIKALISTALGLPEQGFRHLAMSNGEVVEVAW-SGSEA--KWRKLHPDKGPWRCLADEEQAMKAN 473          
BLAST of mRNA_H-elongata_contig10531.441.1 vs. uniprot
Match: R1DPI0_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DPI0_EMIHU)

HSP 1 Score: 138 bits (348), Expect = 8.900e-33
Identity = 94/251 (37.45%), Postives = 133/251 (52.99%), Query Frame = 1
Query:  460 VSFYLLRHGQTNFNAIGRIQGTLDSSVLTEQGISQAVEAGKTLASAEDLELGPTVIVSPMTRARQTLEYVREELQKAKRDFEAVEIVRDIREIELFEWEGELKDDIIRDNPDDYAAWLADPSNFNFSGRYPA-----KDLWARA-GKAWDQIRSLQTIQGQT---STLLVAHNAINQALVFTAFGCDTTYFRK--LA----------WPNCAVLELQWRKGAERAERYRWVIPESSPFVEAADAARILKTS 1149
            V F +LRHGQT+ N  G IQG+ D S L+++G +QA E G  LA   D+ +  T + SP+ RA+QT E     L   + D      +  +REI+L  WEG  K ++  + PD YAAW  DP      GR P       +LW RA   AW  +R++ T   +    +TL+V H ++ QAL+ TA G D T +R+  LA          +PNC + E+ W   A RA R+RW +PE   + ++  AAR L  S
Sbjct:   20 VRFLVLRHGQTDHNRDGIIQGSSDVSRLSDRGRTQAREVGAALARLGDVRVARTFL-SPLARAQQTHEI----LLLDRPDLPTPTTLDGLREIDLGSWEGRAKAELRAEQPDVYAAWQCDPLAMVVDGRRPRCRKPIVELWERARSAAWPTLRAVDTAAAEDDEGATLVVCHGSLGQALLCTALGLDATAWRRHRLARCTAERARHPFPNCGMAEIDWPADAPRATRWRWRLPEEGCW-QSGTAARALHLS 264          
BLAST of mRNA_H-elongata_contig10531.441.1 vs. uniprot
Match: A0A7S2AAY9_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2AAY9_TRICV)

HSP 1 Score: 138 bits (347), Expect = 4.460e-32
Identity = 99/297 (33.33%), Postives = 136/297 (45.79%), Query Frame = 1
Query:  364 GKRFFRAASAVAEPSNATPPETPLPPPGDNDLVSFYLLRHGQTNFNAIGRIQGTLDSSVLTEQGISQAVEAGKTLASAEDLELGPTVI----VSPMTRARQTLEYVRE-----ELQKAKRDFEAVEIVRDIREIELFEWEGELKDDIIRDNPDDYAAW-LADPSNFNFSGRYPAKDLWARAGKAWDQIRS--------------------LQTIQGQT--------------------STLLVAHNAINQALVFTAFGCDTTYFRKLAWPNCAVLELQWRKGAERAERYRWVIPESS 1104
            G+  F  A A A  S +  P  P           +Y+LRHG+T+ NA GRIQG+ D+S LTE+G +QA E      S        TV     VSP+TRAR+TL  VRE      L  A+R      ++ D+REI+ + WEG  K D++ + PD Y AW + D  N    GR P  ++W RA   W+ +R+                     + + G                      STLLV H  + QAL+  AFG D T+FR   +PNC + E+ W    + A  +RW  P  S
Sbjct:   40 GRPSFARALATAATSRSPSPSPPH---------RYYILRHGETDANASGRIQGSSDASRLTERGRAQAAEVAAAAFSGVVGGAVGTVFSAAYVSPLTRARETLSVVRELAGPGVLPPAER------VLTDLREIDFYGWEGRDKADLMAEFPDSYRAWKVGDSRNVVVEGRLPVVEVWERAASVWEVVRADAAAAAXXXXXXXXXSAENHPRAVDGSPGADGDGXXXXTXXXXXDTTPSTLLVCHGTLGQALLCAAFGRDETHFRLYEFPNCGLAEIVWHGDEKLARSWRWHHPTPS 321          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10531.441.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFT7_ECTSI2.430e-14067.70Plastid phosphoglycerate mutase protein n=2 Tax=Ec... [more]
Q00GN2_KARBR6.460e-4543.28Plastid phosphoglycerate mutase protein (Fragment)... [more]
A0A7S4I552_9STRA1.570e-4338.84Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S4C0X0_CHRCT2.540e-4139.69Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S0F1H7_9CRYP3.990e-4142.02Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
L1ISC6_GUITC7.070e-3946.43Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A812MB86_9DINO8.130e-3439.30Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP... [more]
A0A812LVJ0_9DINO5.390e-3340.17NEK1 protein n=1 Tax=Symbiodinium necroappetens Ta... [more]
R1DPI0_EMIHU8.900e-3337.45Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A7S2AAY9_TRICV4.460e-3233.33Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10531contigH-elongata_contig10531:2775..7533 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score429.5
Seed ortholog evalue1.4e-117
Seed eggNOG ortholog2880.D8LFT7
KEGG koko:K22200
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0042578,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0047538
EggNOG free text desc.regulation of pentose-phosphate shunt
EggNOG OGsCOG0588@1,KOG0235@2759
EC3.1.3.63
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionplastid phosphoglycerate mutase protein precursor
Ec32 orthologEc-01_000980.1
Exons4
Model size2844
Cds size948
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10531.441.1prot_H-elongata_contig10531.441.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10531 4443..7305 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929586.3610697-UTR-H-elongata_contig10531:2774..44421622929586.3610697-UTR-H-elongata_contig10531:2774..4442Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10531 2775..4442 -
1691679080.7528048-UTR-H-elongata_contig10531:2774..44421691679080.7528048-UTR-H-elongata_contig10531:2774..4442Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10531 2775..4442 -
1622929586.4235775-UTR-H-elongata_contig10531:7305..75331622929586.4235775-UTR-H-elongata_contig10531:7305..7533Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10531 7306..7533 -
1691679080.799061-UTR-H-elongata_contig10531:7305..75331691679080.799061-UTR-H-elongata_contig10531:7305..7533Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10531 7306..7533 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929586.3762493-CDS-H-elongata_contig10531:4442..47731622929586.3762493-CDS-H-elongata_contig10531:4442..4773Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10531 4443..4773 -
1691679080.7630448-CDS-H-elongata_contig10531:4442..47731691679080.7630448-CDS-H-elongata_contig10531:4442..4773Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10531 4443..4773 -
1622929586.3881588-CDS-H-elongata_contig10531:5213..53061622929586.3881588-CDS-H-elongata_contig10531:5213..5306Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10531 5214..5306 -
1691679080.771084-CDS-H-elongata_contig10531:5213..53061691679080.771084-CDS-H-elongata_contig10531:5213..5306Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10531 5214..5306 -
1622929586.400297-CDS-H-elongata_contig10531:6262..64951622929586.400297-CDS-H-elongata_contig10531:6262..6495Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10531 6263..6495 -
1691679080.7790334-CDS-H-elongata_contig10531:6262..64951691679080.7790334-CDS-H-elongata_contig10531:6262..6495Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10531 6263..6495 -
1622929586.412645-CDS-H-elongata_contig10531:7014..73051622929586.412645-CDS-H-elongata_contig10531:7014..7305Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10531 7015..7305 -
1691679080.7881346-CDS-H-elongata_contig10531:7014..73051691679080.7881346-CDS-H-elongata_contig10531:7014..7305Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10531 7015..7305 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10531.441.1

>prot_H-elongata_contig10531.441.1 ID=prot_H-elongata_contig10531.441.1|Name=mRNA_H-elongata_contig10531.441.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=316bp
MKTGRGRVLFAPGGLVVAMTAARKGIARAFSFGGLRGAINLQHPFGKRFF
RAASAVAEPSNATPPETPLPPPGDNDLVSFYLLRHGQTNFNAIGRIQGTL
DSSVLTEQGISQAVEAGKTLASAEDLELGPTVIVSPMTRARQTLEYVREE
LQKAKRDFEAVEIVRDIREIELFEWEGELKDDIIRDNPDDYAAWLADPSN
FNFSGRYPAKDLWARAGKAWDQIRSLQTIQGQTSTLLVAHNAINQALVFT
AFGCDTTYFRKLAWPNCAVLELQWRKGAERAERYRWVIPESSPFVEAADA
ARILKTSANDNRFTL*
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mRNA from alignment at H-elongata_contig10531:2775..7533-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10531.441.1 ID=mRNA_H-elongata_contig10531.441.1|Name=mRNA_H-elongata_contig10531.441.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4759bp|location=Sequence derived from alignment at H-elongata_contig10531:2775..7533- (Himanthalia elongata Himel1 dioecious)
GTTTACCTCACAACGTTCAGCGAAGGAAACACTGCATCCTTTTCAAACAG CTTGCACAGAAGTTGAGACTACCGCTATCGAATCATTTGAATCTGTCCGA AATTGAGGGGATAATCTTGTAGGCCTCGAACTCGTGCTGGAAGACTAACA ACGTAGACCAGAGGACACAAGAGCTCCGTATTTCGACGATTTTTCTTTCC AATATAAGTCCCACAGCAATAGCCTGTAATGAAGACTGGACGAGGCCGCG TTCTATTTGCCCCAGGAGGGCTCGTGGTCGCTATGACTGCGGCACGAAAG GGCATTGCGCGGGCTTTCTCCTTCGGCGGTCTCAGGGGCGCAATCAATCT TCAGCACCCTTTCGGAAAGAGATTTTTTCGGGCTGCAAGCGCAGTGGCCG AGCCGTCCAACGCTACACCGCCGGAGACGCCTTTGCCTCCACCCGGGGAC AACGACCTGGTGTCTTTTTACCTACTGCGCCACGGACAGACGAACTTCAA CGCCATTGGGCGTATCCAGGTGCGTAGAAGTTTACATGTGCGCTAGTAAG TATTCCTAGACTGCGTAGATATCTTTTGACCCAGGATACACAGGAAGACA GCTGATCAGATGGGAACACTTAAGGGTCAAAACGCAAAGCAACGGCCAAG GACATACACGGAATTACACAAGGGAGATTTTTTTTTTTTTAATGATGGAC TGATCGAAGCAATTTTTTAATTTTCACAAAATCGGAACTGGCTTGAACTT GCTCCTCAAACCGAGGGGTAGCCGGGCCCTATGCGCTTAACTGAGCCTTC GGAAGTCCGGTGATGGCATATGCCGTCATCCGGTGACACCTCTAGCTCCA AGAAAATCGACAGTCGAGATATATATCAAGGCAAAAAGTATATTTTACAC GTCTTTTCTCTCTCCAGCCTCAAGTTGATTTCAAAATTTAACAGCTGTTC CCTTTTGTTGCTTCGTCTTTGACCTGCTCCGGACGGTGTTGAATCCTGTG ACCTATCGGGGTGTCGCTCGATTTTTAATTCCGTACAGGGGACGTTGGAT TCATCAGTTCTCACCGAGCAGGGCATTTCGCAAGCCGTGGAGGCTGGCAA AACCCTGGCATCGGCGGAGGACCTCGAGCTTGGCCCGACTGTAATCGTGT CGCCCATGACCCGTGCTCGCCAGACGCTCGAATACGTCCGCGAGGAGCTC CAGAAGGCCAAGCGCGACTTCGAGGCTGTCGAGATAGTCCGCGACATCAG AGAGATCGAACTGTTCGAGTGGTGAGTGCATTCGTTTGCGTGGGGTGTGT CGGCAGGCTCTGGTTTGGCGTCACCCCCCCCCTGCTTAACAGAGCTTGTG AGTCTACTGCTTAACACGAGCTCGGCCCCAGTGGGTTGGCTCGCCCCAGC TGCTCCTAGCGCATGTGTCCTGAAATGGATACCATCCATCAACCAACGTC GGTCGGTCACGGCTGGTAATAAAGCATCGTGGGGAGATACATAATATGTT ACCGTTGCTAAATATTGCGGTCTTGAAAACTCTTATGTAAAGCTCAACGT CGATTTCCTATGATGGGCCACGTGTTCTGGACATTTTTTTTCTCCTATTT TTGCTTCAAATTCTCGAGGGCACATTTCGCAGCCAGGGCGAGCTGGCTGA CCTTCATTCCCATCCTCCTTGAAAGTATGCTTGACGCAACACAGAAACCA AATTCCCATTCCTCCACTCCCAACCATCTGTCAATCCCCCGTTTCAACCG TTGTATTGGAGCGAACGGTCCGTTGGCCTTTATCGGTATATTAGTTGTTT TTCCGTTGGCGAGAGTACTGCAGACCACGTCTCCTTCCCCCCGCCTTGTC GAACCTGCCGATACTCTGTACTTCGTCTTAGATCGAGGCAGCCCAAGCAG TCCTGAGTATAAACTAACTAAAGAGTTTTACCCTCTCGAGCTATAAGGTA GATATCCTCTAAGTTGTTATTCAGTAGAAGGCCCTGGCCCACCAGCAAGT GCGACGTTGACGATCCACCCGAGAAAATTCATACAGAACATTGCACATGC TGCAATGGGTGTGTGTTATGGTGTCAGAGGTCCTTGTTTATTGAGTCAGT TATCCGTTGTATGACTTATTTTAAACGTTGGATTGAAAATGCGCCTCACG ATATCCGCCCCCCTTCCCCCCCCCTTGCTAATGATGTGATTGATTTTGTT GCTTACGGATTGTTATGTTCTCCGCAGGGAAGGAGAGCTCAAGGATGATA TCATAAGAGACAACCCAGACGATTACGCCGCGTGGTTAGCGGATCCTTCG AACTTCAACTTCTCGGGAAGGTACAGTAACATGTCCTAAACTATAATATT ACTAGTGTGTCGTTTGGGAGAGCCGGTCCTGTACAGACAGCCCTGTACAG ACAGTTACAACTTGCCTCACTCCCTCGCTCGCTCTATGTCTGGACGATAC TTTAATTTGATAAGTGTGAGTCGATCGCTCGATCCTCTCTCAACATTCGC GTACCGAAAATTAAGCAGTATTTTAGCCGAGTGACAACTTAACGGAAAGG GTCCGTTGTCGCCCCGAAGGGAATGCATGTCATCCCTTCCGCTCGCCCCC CCCACCCCCCCACCTCCACCATCCACTGCGCGTGCCTGGAAGTCTCATAT AATCACAAGACGCCGTATGTCCCTCTCGAGTGGCTTGCCCCAAATTGAAA GTATTTAATGATAAATCTTTAGACTATCCCGTCGGCGTCCCCACTGCTGT GGGATTTCAGGTACCCGGCGAAAGATCTGTGGGCGCGAGCGGGTAAGGCC TGGGATCAGATCCGCTCTCTTCAGACGATTCAGGGCCAAACAAGCACCCT CCTCGTGGCTCACAACGCGATCAATCAAGCCCTGGTGTTCACTGCCTTCG GCTGCGACACGACGTACTTCCGAAAGCTCGCGTGGCCCAACTGCGCGGTT CTCGAGCTCCAATGGCGTAAGGGGGCGGAGAGGGCGGAGCGTTACCGCTG GGTGATTCCCGAATCGTCACCCTTCGTCGAGGCGGCGGATGCGGCAAGGA TTCTCAAGACCAGCGCGAATGACAACCGTTTCACCCTCTGATAAGAGAGG AGAGACGGTCTGGGCCGGTTGGGTTAGGCATAACGCTTCTTACAAATCGA CACGGGTGAGACAAAGGTGGCGAGTTCGGGGGCGTGTTTCGTAAGTGGAG GAAAGGCTAGTGCGAAGTATTTTTTGAACATTTTTTCATCAAACTGAAAC CATCATGCGGATATAGCCAGTTATGTTGATGATGAAATAGAATCGCTGCG GGCAGATGAAGTGTATAGTCATGAGAAACGACAAAGGTCCCCGCGCAAAC TGACTCGATGTGAGACGTGACTTTAAACTTGCGGTAGCGAGGTTACGAAG TATTTCATCTGTTCTGTTGCGCGTCGGTCCGTTTGTTGATCAAGACGGTG TACACGGCGGCGCAAGCACATCGACCGGAGTTTGGATCTGTCATCCCTGT TAACTGTTAGAGAGTTCGTATGTGACGGTAAAATTTGCGTGGTGCACGTG AATGGGTGGGTGGGTGACTCCGGCGTGGAAAAAACGGTTTAATGCGTGGT GAGAAGCGCCGGTGTTATCCATTCATCTATACGGGAGAGACAAAGCAGGC GGACCTTTTGACACAACATATTATCATAGACAACACTAGAAAGAGGGTAG ACTTATGGGGCATTTTCTACGCCCTTGAGATGCGGTTGCACGTTGCCTTG TTTTATCGGTCGGTCTCGATTTTGTAGAAAGGTCTGGCTGAGCGGACGTC GTTTGCGTCAAACGCGTCGATTCGATTCGATCCGAATTCGATTGGATACG CTCCTTCCCTAGTGTGATCTGTCAAGCTTTCCATGATGTCAGTCGTTTTC GGGTTGAACTGTGAACTGCGGGTTAGGTGTTGGGGAAAGAGCCTACCGAT GCGAGGGACTTATGTGACCAGCGCCAGCCGCTTCGAATAGAGTACTTCGA ATAGAGTAGTCGAAACGGGCGGATGTGAGGTCCTTGCTGTAATCGTTCGG GATGTGCCTCCCGGGTAACCTGAAAGGATGGGGCCATGAGTTGGCCAAGC GTATAATCTTATACTGTAGGTAACCACGGCCTTTGTTAGCGTTGGTATAG TAGTCAGAGGGAGGTGCGATCGCGAATATAAGCCAGTCAAGTTTTTCGAT TTTGGTGGTGGAGAGGGTGAACCCTAGTTACTTGACGAATGTTTTGAAAA AAATTGCCAGCGGTTCTCATCGAAATACATCCATCTCTGGTGGTTGGCTG GTTGGTCCCGATACGCCCTACAAGCAGAAAAGTTAATCCACCATCGCAGC GATGTGCTGCGTGCTCTTCCTGTAGGGCGAACTGTATGTAGGTACTGTAG CTATCGAGGTCTGCTTTGCGCGCCACTAGGGCCGCTGGAGATTAACGACG GCACAGCCGTAACTGGTCACTAGGAGTCTTCCTTGTATGTTACAACAATA AGCAGCGCTGGTGCATCGGAGCACGCATGTTCATTTGTTGTTAAGATATA TATCCGCCCTTGGCCTAGGAGCTGGACTCGACGCCAGAGGAGCTGAAATA TTTGACACAAGTACGATAGTAGACACTGCTGAGGATGAATTAGGTTGGAA GAAGCCGAGAAGGCTGCAGCTGTGTCATGTTCACACACCGAAGCCGGTGT AAGGAAGGTGTATATGTTCGAAGGGTTTCATAGAGTTTTCAAGTTAAATG TCACTTTCC
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Coding sequence (CDS) from alignment at H-elongata_contig10531:2775..7533-

>mRNA_H-elongata_contig10531.441.1 ID=mRNA_H-elongata_contig10531.441.1|Name=mRNA_H-elongata_contig10531.441.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1896bp|location=Sequence derived from alignment at H-elongata_contig10531:2775..7533- (Himanthalia elongata Himel1 dioecious)
ATGAAGACTGGACGAGGCCGCGTTCTATTTGCCCCAGGAGGGCTCGTGGT
CGCTATGACTGCGGCACGAAAGGGCATTGCGCGGGCTTTCTCCTTCGGCG
GTCTCAGGGGCGCAATCAATCTTCAGCACCCTTTCGGAAAGAGATTTTTT
CGGGCTGCAAGCGCAGTGGCCGAGCCGTCCAACGCTACACCGCCGGAGAC
GCCTTTGCCTCCACCCGGGGACAACGACCTGGTGTCTTTTTACCTACTGC
GCCACGGACAGACGAACTTCAACGCCATTGGGCGTATCCAGATGAAGACT
GGACGAGGCCGCGTTCTATTTGCCCCAGGAGGGCTCGTGGTCGCTATGAC
TGCGGCACGAAAGGGCATTGCGCGGGCTTTCTCCTTCGGCGGTCTCAGGG
GCGCAATCAATCTTCAGCACCCTTTCGGAAAGAGATTTTTTCGGGCTGCA
AGCGCAGTGGCCGAGCCGTCCAACGCTACACCGCCGGAGACGCCTTTGCC
TCCACCCGGGGACAACGACCTGGTGTCTTTTTACCTACTGCGCCACGGAC
AGACGAACTTCAACGCCATTGGGCGTATCCAGGGGACGTTGGATTCATCA
GTTCTCACCGAGCAGGGCATTTCGCAAGCCGTGGAGGCTGGCAAAACCCT
GGCATCGGCGGAGGACCTCGAGCTTGGCCCGACTGTAATCGTGTCGCCCA
TGACCCGTGCTCGCCAGACGCTCGAATACGTCCGCGAGGAGCTCCAGAAG
GCCAAGCGCGACTTCGAGGCTGTCGAGATAGTCCGCGACATCAGAGAGAT
CGAACTGTTCGAGTGGGGACGTTGGATTCATCAGTTCTCACCGAGCAGGG
CATTTCGCAAGCCGTGGAGGCTGGCAAAACCCTGGCATCGGCGGAGGACC
TCGAGCTTGGCCCGACTGTAATCGTGTCGCCCATGACCCGTGCTCGCCAG
ACGCTCGAATACGTCCGCGAGGAGCTCCAGAAGGCCAAGCGCGACTTCGA
GGCTGTCGAGATAGTCCGCGACATCAGAGAGATCGAACTGTTCGAGTGGG
AAGGAGAGCTCAAGGATGATATCATAAGAGACAACCCAGACGATTACGCC
GCGTGGTTAGCGGATCCTTCGAACTTCAACTTCTCGGGAAGGGAAGGAGA
GCTCAAGGATGATATCATAAGAGACAACCCAGACGATTACGCCGCGTGGT
TAGCGGATCCTTCGAACTTCAACTTCTCGGGAAGGTACCCGGCGAAAGAT
CTGTGGGCGCGAGCGGGTAAGGCCTGGGATCAGATCCGCTCTCTTCAGAC
GATTCAGGGCCAAACAAGCACCCTCCTCGTGGCTCACAACGCGATCAATC
AAGCCCTGGTGTTCACTGCCTTCGGCTGCGACACGACGTACTTCCGAAAG
CTCGCGTGGCCCAACTGCGCGGTTCTCGAGCTCCAATGGCGTAAGGGGGC
GGAGAGGGCGGAGCGTTACCGCTGGGTGATTCCCGAATCGTCACCCTTCG
TCGAGGCGGCGGATGCGGCAAGGATTCTCAAGACCAGCGCGAATGACAAC
CGTTTCACCCTCTGAGTACCCGGCGAAAGATCTGTGGGCGCGAGCGGGTA
AGGCCTGGGATCAGATCCGCTCTCTTCAGACGATTCAGGGCCAAACAAGC
ACCCTCCTCGTGGCTCACAACGCGATCAATCAAGCCCTGGTGTTCACTGC
CTTCGGCTGCGACACGACGTACTTCCGAAAGCTCGCGTGGCCCAACTGCG
CGGTTCTCGAGCTCCAATGGCGTAAGGGGGCGGAGAGGGCGGAGCGTTAC
CGCTGGGTGATTCCCGAATCGTCACCCTTCGTCGAGGCGGCGGATGCGGC
AAGGATTCTCAAGACCAGCGCGAATGACAACCGTTTCACCCTCTGA
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