mRNA_H-elongata_contig10531.441.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig10531.441.1 vs. uniprot
Match: D8LFT7_ECTSI (Plastid phosphoglycerate mutase protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFT7_ECTSI) HSP 1 Score: 430 bits (1106), Expect = 2.430e-140 Identity = 218/322 (67.70%), Postives = 260/322 (80.75%), Query Frame = 1
Query: 244 GRVLFAPGGLVVAMTAARKGIARAFSFGGLRGAINLQHPFGKRFFRAASAVAEP---------SNATPPETPLPPPGDN-DLVSFYLLRHGQTNFNAIGRIQGTLDSSVLTEQGISQAVEAGKTLASAEDLELGPTVIVSPMTRARQTLEYVREELQKAK--RDFEAVEIVRDIREIELFEWEGELKDDIIRDNPDDYAAWLADPSNFNFSGRYPAKDLWARAGKAWDQIRSLQTIQGQTSTLLVAHNAINQALVFTAFGCDTTYFRKLAWPNCAVLELQWRKGAERAERYRWVIPESSPFVEAADAARILKTSANDNRFTL 1173
GR APGG ++A+ ARK RAF FGG GKR FR+ +A + + ATPPE+P PP GD+ +L SF+LLRHGQTNFNAIGRIQGTLDSS+LTE+GISQA+EAGKTLAS DL+LGPTV+VSPM RA+QTLE VR+EL+K++ +DFE VEIV DIREIELFEW+G+LK+DII++NP+ YA+W+ADPSNFNFSGRYPA+DLW RA AWDQIRSLQ+IQ Q TL+VAHNAINQAL++TA GCDTTYFRKL+WPNCAVLELQWR+G RAERYRWV+PE+S FVEAADAAR+LK +DNR+TL
Sbjct: 5 GRPRPAPGGFLIALATARKSFTRAFCFGG-----GSSSSVGKRLFRSTAAESSAKAGTGPRGLATATPPESPFPPAGDDGELESFFLLRHGQTNFNAIGRIQGTLDSSILTEEGISQALEAGKTLASYADLDLGPTVVVSPMGRAQQTLECVRQELRKSEISKDFETVEIVPDIREIELFEWQGQLKEDIIKNNPEQYASWVADPSNFNFSGRYPARDLWKRASNAWDQIRSLQSIQDQPRTLVVAHNAINQALLWTALGCDTTYFRKLSWPNCAVLELQWRRGEARAERYRWVVPEASGFVEAADAARLLKDGEDDNRYTL 321
BLAST of mRNA_H-elongata_contig10531.441.1 vs. uniprot
Match: Q00GN2_KARBR (Plastid phosphoglycerate mutase protein (Fragment) n=1 Tax=Karenia brevis TaxID=156230 RepID=Q00GN2_KARBR) HSP 1 Score: 175 bits (444), Expect = 6.460e-45 Identity = 103/238 (43.28%), Postives = 146/238 (61.34%), Query Frame = 1
Query: 466 FYLLRHGQTNFNAIGRIQGTLDSSVLTEQGISQAVEAGKTLASAEDLELGPTVIVSPMTRARQTLEYVREELQKAKRDFEAVEIVRDIREIELFEWEGELKDDIIRDNPDDYAAWLADPSNFNFSGRYPAKDLWARAGKAWDQIRSLQTIQGQTS--TLLVAHNAINQALVFTAFGCDTTYFRKLAWPNCAVLELQWRKGAERAERYRWVIP--ESSPFVEAADAARILKTSANDNRF 1167
+ +LRHG+TNFNA G +QG+ D S LTE+G +QA +AG LA+ DL + V VSP+TRA TLE V + L + EA+ + ++REI+L+ WEG+ K+D+ R+ PD Y AW + +F G YP +LW RA +AW IR+ + + TL+V HN I QAL F+A G D +YFR+L++PN LE W G A R+RW +P E+S +A AA + A+D R+
Sbjct: 99 YLILRHGETNFNAKGILQGSSDISRLTEKGQAQANKAGMELATLSDLPI-EQVFVSPLTRATSTLELVAQSLPCSLP--EAITLP-ELREIDLYSWEGKQKEDLKREMPDTYQAWKSADPDFVVDGHYPLVELWQRAKEAWAAIRASEDGKRDIDGVTLIVCHNGIGQALFFSAIGLDASYFRQLSFPNAGALECDWPLGELHASRWRWRLPLDEASSEWRSATAASL---DASDGRY 329
BLAST of mRNA_H-elongata_contig10531.441.1 vs. uniprot
Match: A0A7S4I552_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I552_9STRA) HSP 1 Score: 169 bits (429), Expect = 1.570e-43 Identity = 94/242 (38.84%), Postives = 137/242 (56.61%), Query Frame = 1
Query: 439 PPGDNDLVSFYLLRHGQTNFNAIGRIQGTLDSSVLTEQGISQAVEAGKTLASAEDLEL---GPT--VIVSPMTRARQTLEYVREELQKAKRDFEAVEIVRDIREIELFEWEGELKDDIIRDNPDDYAAW-LADPSNFNFSGRYPAKDLWARAGKAWDQIRSLQTIQGQT-------STLLVAHNAINQALVFTAFGCDTTYFRKLAWPNCAVLELQWRKGAERAERYRWVIPESSPFVEAAD 1125
PP L +++LRHG+T+ NA GRIQG+ D S LTE+G SQA G + D E GP V SP+TRA++TL+ +RE + E ++ ++REI+L++WEG +I ++P+ YAAW + D SG P ++WARAG+ W+ IRS + G+T STLLV H + Q L+ +A G D T+FR+ +PNC + E+ W E A +RW P S ++ D
Sbjct: 33 PPSSASLHRYFILRHGETDANASGRIQGSADFSRLTERGQSQAARVGSVVFGGSDGEGSIDGPIRHVYASPLTRAQETLQIIREHADPSLIPGEGEIVLDELREIDLYDWEGRHTSEIEENDPEAYAAWTMGDAHGMEVSGCKPIVEMWARAGRVWEIIRSANAVAGRTDSDENPSSTLLVCHGTLGQGLLSSALGLDETHFRRHDFPNCGMAEIVWYHDEEIARNWRWHHPSRSELMQPFD 274
BLAST of mRNA_H-elongata_contig10531.441.1 vs. uniprot
Match: A0A7S4C0X0_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C0X0_CHRCT) HSP 1 Score: 163 bits (413), Expect = 2.540e-41 Identity = 102/257 (39.69%), Postives = 138/257 (53.70%), Query Frame = 1
Query: 379 RAASAVAEPSNATPPETPLPPPGDNDLVSFYLLRHGQTNFNAIGRIQGTLDSSVLTEQGISQAVEAGKTLASAEDLELGPTVIVSPMTRARQTLEYVREELQKAKRDFEAVEIVRDIREIELFEWEGELKDDIIRDNPDDYAAWLADPSNFNFSGRYPAKDLWARAGKAWDQIRSLQTIQGQTSTLLVA-HNAINQALVFTAFGCDTTYFRKLAWPNCAVLELQWRKGAER--------------AERYRWVIPESS 1104
RA+SA +P P + P G F +LRHG+TN NA G IQG+ D SVLT++G QA AG+ LA V VSP++RAR TLE R+ + ++ D+RE++L++WEG K D+ R+ PD+Y AW P F+ SG+ P DLWARA W +I S + T+LV H+ I QAL+ TA G D FR+ A PNC +EL+W G A R+RW+IP +S
Sbjct: 15 RASSAALQP-----PTSAAPGAG----CKFVILRHGETNHNADGIIQGSSDVSVLTDKGKEQARRAGEQLAELYQEGSISKVFVSPLSRARDTLELCRKTAPLPTGEI----VLADLREVDLWDWEGRNKADLRRERPDEYEAWKGQPLLFSVSGKKPIVDLWARARNVWREIHSQVPEDPSSGTILVVCHSGIGQALLSTALGEDERSFRRRALPNCGAVELEWIDGYVASTDGGVASMDSDCLANRWRWLIPNTS 258
BLAST of mRNA_H-elongata_contig10531.441.1 vs. uniprot
Match: A0A7S0F1H7_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0F1H7_9CRYP) HSP 1 Score: 166 bits (420), Expect = 3.990e-41 Identity = 100/238 (42.02%), Postives = 138/238 (57.98%), Query Frame = 1
Query: 466 FYLLRHGQTNFNAIGRIQGTLDSSVLTEQGISQAVEAGKTLASAEDLELGPTVIVSPMTRARQTLEYVREELQKAKRDFEAVEIVRDIREIELFEWEGELKDDIIRDNPDDYAAWLAD-PSNFNF-SGRYPAKDLWARAGKAWDQIRSLQTIQGQTSTLLVAHNAINQALVFTAFGCDTTYFRKLAWPNCAVLELQWRKGAERAERYRWVIPESSP------FVEAADAARILKTSAN 1155
F +LRHG+TN+NA GRIQG+ D S LTE+G +QA G L+ +V VSP+TRAR+TLE L + + ++ D+RE++L+EWEG LK +I PD Y+ W + P F SG+YP +DLW RA WD +R T G+T TL+VAHN INQAL+ T G +FRKL +PNC + E+ G +A+++RW+ P S + D KTSA+
Sbjct: 158 FLILRHGKTNYNAEGRIQGSTDFSRLTEEGEAQASSVGGILSEIHI----DSVFVSPLTRARRTLELAEAGLGRNLSG--SAIVLDDLREVDLYEWEGMLKKEIKEMYPDIYSLWRGENPRQFKLDSGKYPIRDLWKRASNVWDVLRRDAT-NGKT-TLIVAHNGINQALLCTTLGLSEEFFRKLEFPNCGIAEVIIPHGQSKAKQWRWLYPTPSEWSYHDMYSAEEDVEETSKTSAS 387
BLAST of mRNA_H-elongata_contig10531.441.1 vs. uniprot
Match: L1ISC6_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1ISC6_GUITC) HSP 1 Score: 154 bits (388), Expect = 7.070e-39 Identity = 91/196 (46.43%), Postives = 123/196 (62.76%), Query Frame = 1
Query: 466 FYLLRHGQTNFNAIGRIQGTLDSSVLTEQGISQAVEAGKTLASAEDLELGPTVIVSPMTRARQTLEYVREELQKAKRDFEAVEIVRDIREIELFEWEGELKDDIIRDN-PDDYAAWLAD-PSNFNF-SGRYPAKDLWARAGKAWDQIRSLQTIQGQTSTLLVAHNAINQALVFTAFGCDTTYFRKLAWPNCAVLEL 1044
F LRHG+TN+NA GRIQG+ D S LTE+G +QA G+ L+ D+ + +V VSP+TRAR TLE + D + ++ D+RE++L EWEG LK I++ PD Y+ W + P F SG+YP +DLW RAGK W+ +R G+TS L+VAHN INQAL+ T G YFRKL +PNC + E+
Sbjct: 17 FLFLRHGKTNYNAEGRIQGSTDFSRLTEEGEAQASSVGRILS---DIPID-SVFVSPLTRARMTLELAAAGSGRNLSD--SAMVLDDLREVDLHEWEGMLKKQEIKEMYPDIYSLWRGENPREFKLDSGKYPIRDLWKRAGKVWEVLRR-DAANGKTS-LIVAHNGINQALLCTTLGLSEEYFRKLEFPNCGIAEV 204
BLAST of mRNA_H-elongata_contig10531.441.1 vs. uniprot
Match: A0A812MB86_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812MB86_9DINO) HSP 1 Score: 140 bits (354), Expect = 8.130e-34 Identity = 90/229 (39.30%), Postives = 131/229 (57.21%), Query Frame = 1
Query: 466 FYLLRHGQTNFNAIGRIQGTLDS-SVLTEQGISQAVEAGKTLASAEDLELGPTVIVSPMTRARQTLEYVREELQKAKRDFEAVEIVRDIREIELFEWEGELKDDIIRDNPDDYAAWLADPSNFNFSGRYPAKDLWARAGKAWDQIRSLQTIQGQTSTLLVAHNAINQALVFTAFGCDTTYFRKLAWPNCAVLELQWRKGAERAERYRWVIPESSPFVEAADAARILKTS 1149
F L+RHGQT FNA R QG++D SVLT +GISQA E G+ L V VSP+ RARQTLE R + E + ++REI+L+EW+G +D+I ++P+ W + N SGRY +DLW R+ +AW ++R + G+ +L+VAH AI +AL+ TA G FR LA N V+E+ W G+E ++R + P+ P+ AD + +K +
Sbjct: 22 FLLVRHGQTTFNAEKRFQGSMDEGSVLTAKGISQAEELGQWLKGNPVA----AVFVSPLLRARQTLEVARTVAGEVLPPTETK--LSELREIDLYEWQGRTQDEIRAEDPELMRLWKEETWNLQVSGRYVVRDLWRRSIEAWHRMRQVAP-SGEERSLVVAHGAIIKALISTALGLPEQGFRHLAMSNGEVVEVAW-SGSEA--KWRKLHPDKGPWRCLADEEQAMKAN 240
BLAST of mRNA_H-elongata_contig10531.441.1 vs. uniprot
Match: A0A812LVJ0_9DINO (NEK1 protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812LVJ0_9DINO) HSP 1 Score: 144 bits (364), Expect = 5.390e-33 Identity = 92/229 (40.17%), Postives = 133/229 (58.08%), Query Frame = 1
Query: 466 FYLLRHGQTNFNAIGRIQGTLDS-SVLTEQGISQAVEAGKTLASAEDLELGPTVIVSPMTRARQTLEYVREELQKAKRDFEAVEIVRDIREIELFEWEGELKDDIIRDNPDDYAAWLADPSNFNFSGRYPAKDLWARAGKAWDQIRSLQTIQGQTSTLLVAHNAINQALVFTAFGCDTTYFRKLAWPNCAVLELQWRKGAERAERYRWVIPESSPFVEAADAARILKTS 1149
F L+RHGQT FNA R QG++D SVLT +GISQA E G+ L V VSP+ RARQTLE R + E + ++REI+L+EW+G +D+I ++P+ W + N SGRY +DLW R+ +AW ++R + +G+TS L+VAH AI +AL+ TA G FR LA N V+E+ W G+E ++R + P+ P+ AD + +K +
Sbjct: 255 FLLVRHGQTTFNAEKRFQGSMDEGSVLTAKGISQAEELGQWLKGNPVA----AVFVSPLLRARQTLEVARTVAGEVLPPTETK--LSELREIDLYEWQGRTQDEIRAEDPEFIRLWKEETWNLQVSGRYVVRDLWRRSIEAWHRMRQVAPSRGETS-LVVAHGAIIKALISTALGLPEQGFRHLAMSNGEVVEVAW-SGSEA--KWRKLHPDKGPWRCLADEEQAMKAN 473
BLAST of mRNA_H-elongata_contig10531.441.1 vs. uniprot
Match: R1DPI0_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DPI0_EMIHU) HSP 1 Score: 138 bits (348), Expect = 8.900e-33 Identity = 94/251 (37.45%), Postives = 133/251 (52.99%), Query Frame = 1
Query: 460 VSFYLLRHGQTNFNAIGRIQGTLDSSVLTEQGISQAVEAGKTLASAEDLELGPTVIVSPMTRARQTLEYVREELQKAKRDFEAVEIVRDIREIELFEWEGELKDDIIRDNPDDYAAWLADPSNFNFSGRYPA-----KDLWARA-GKAWDQIRSLQTIQGQT---STLLVAHNAINQALVFTAFGCDTTYFRK--LA----------WPNCAVLELQWRKGAERAERYRWVIPESSPFVEAADAARILKTS 1149
V F +LRHGQT+ N G IQG+ D S L+++G +QA E G LA D+ + T + SP+ RA+QT E L + D + +REI+L WEG K ++ + PD YAAW DP GR P +LW RA AW +R++ T + +TL+V H ++ QAL+ TA G D T +R+ LA +PNC + E+ W A RA R+RW +PE + ++ AAR L S
Sbjct: 20 VRFLVLRHGQTDHNRDGIIQGSSDVSRLSDRGRTQAREVGAALARLGDVRVARTFL-SPLARAQQTHEI----LLLDRPDLPTPTTLDGLREIDLGSWEGRAKAELRAEQPDVYAAWQCDPLAMVVDGRRPRCRKPIVELWERARSAAWPTLRAVDTAAAEDDEGATLVVCHGSLGQALLCTALGLDATAWRRHRLARCTAERARHPFPNCGMAEIDWPADAPRATRWRWRLPEEGCW-QSGTAARALHLS 264
BLAST of mRNA_H-elongata_contig10531.441.1 vs. uniprot
Match: A0A7S2AAY9_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2AAY9_TRICV) HSP 1 Score: 138 bits (347), Expect = 4.460e-32 Identity = 99/297 (33.33%), Postives = 136/297 (45.79%), Query Frame = 1
Query: 364 GKRFFRAASAVAEPSNATPPETPLPPPGDNDLVSFYLLRHGQTNFNAIGRIQGTLDSSVLTEQGISQAVEAGKTLASAEDLELGPTVI----VSPMTRARQTLEYVRE-----ELQKAKRDFEAVEIVRDIREIELFEWEGELKDDIIRDNPDDYAAW-LADPSNFNFSGRYPAKDLWARAGKAWDQIRS--------------------LQTIQGQT--------------------STLLVAHNAINQALVFTAFGCDTTYFRKLAWPNCAVLELQWRKGAERAERYRWVIPESS 1104
G+ F A A A S + P P +Y+LRHG+T+ NA GRIQG+ D+S LTE+G +QA E S TV VSP+TRAR+TL VRE L A+R ++ D+REI+ + WEG K D++ + PD Y AW + D N GR P ++W RA W+ +R+ + + G STLLV H + QAL+ AFG D T+FR +PNC + E+ W + A +RW P S
Sbjct: 40 GRPSFARALATAATSRSPSPSPPH---------RYYILRHGETDANASGRIQGSSDASRLTERGRAQAAEVAAAAFSGVVGGAVGTVFSAAYVSPLTRARETLSVVRELAGPGVLPPAER------VLTDLREIDFYGWEGRDKADLMAEFPDSYRAWKVGDSRNVVVEGRLPVVEVWERAASVWEVVRADAAAAAXXXXXXXXXSAENHPRAVDGSPGADGDGXXXXTXXXXXDTTPSTLLVCHGTLGQALLCAAFGRDETHFRLYEFPNCGLAEIVWHGDEKLARSWRWHHPTPS 321 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10531.441.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10531.441.1 >prot_H-elongata_contig10531.441.1 ID=prot_H-elongata_contig10531.441.1|Name=mRNA_H-elongata_contig10531.441.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=316bp MKTGRGRVLFAPGGLVVAMTAARKGIARAFSFGGLRGAINLQHPFGKRFFback to top mRNA from alignment at H-elongata_contig10531:2775..7533- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig10531.441.1 ID=mRNA_H-elongata_contig10531.441.1|Name=mRNA_H-elongata_contig10531.441.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4759bp|location=Sequence derived from alignment at H-elongata_contig10531:2775..7533- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig10531:2775..7533- >mRNA_H-elongata_contig10531.441.1 ID=mRNA_H-elongata_contig10531.441.1|Name=mRNA_H-elongata_contig10531.441.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1896bp|location=Sequence derived from alignment at H-elongata_contig10531:2775..7533- (Himanthalia elongata Himel1 dioecious)back to top |