mRNA_H-elongata_contig170763.4374.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig170763.4374.1
Unique NamemRNA_H-elongata_contig170763.4374.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig170763.4374.1 vs. uniprot
Match: A0A6H5JJW9_9PHAE (Ribonuclease n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJW9_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 2.350e-41
Identity = 75/99 (75.76%), Postives = 81/99 (81.82%), Query Frame = 1 
Query:    1 LSRSCWQRKRGEGFSMVIGVDEAGRGPFAGPVVAAACHIPADVIIQGVQDSKKVAQHRDREALFKELTGEPGVVWATAEVGSRRIDEINILEATKEAMT 297
            L R+   RK  EGF  VIG+DEAGRGPFAGPVVAAAC IP DV I G+QDSKK+ QH DRE LFKELT  PGV+WAT+EVGS RIDEINILEATKEAMT
Sbjct:  114 LGRTRENRKLAEGFDAVIGLDEAGRGPFAGPVVAAACMIPPDVNILGIQDSKKITQHSDRETLFKELTETPGVIWATSEVGSSRIDEINILEATKEAMT 212
[Close]
BLAST of mRNA_H-elongata_contig170763.4374.1 vs. uniprot
Match: A0A0P1ACX4_PLAHL (Ribonuclease n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ACX4_PLAHL)

HSP 1 Score: 116 bits (291), Expect = 4.510e-30
Identity = 61/99 (61.62%), Postives = 75/99 (75.76%), Query Frame = 1 
Query:    1 LSRSCWQRKRGEGFSMVIGVDEAGRGPFAGPVVAAACHIPADVIIQGVQDSKKVAQHRDREALFKELTGEPGVVWATAEVGSRRIDEINILEATKEAMT 297
            LSR    R + +G+S VIGVDEAGRGP AGPVVAAACH+P DV+I+GV DSKK+ Q R REALF+ LT  P + +A     ++RIDEINIL+A+ EAMT
Sbjct:   54 LSRQFETRYKAKGYSTVIGVDEAGRGPLAGPVVAAACHVPLDVVIEGVDDSKKILQER-REALFELLTTHPSITYAVHVNSAQRIDEINILQASLEAMT 151
[Close]
BLAST of mRNA_H-elongata_contig170763.4374.1 vs. uniprot
Match: G4Z1P2_PHYSP (Ribonuclease n=4 Tax=Phytophthora TaxID=4783 RepID=G4Z1P2_PHYSP)

HSP 1 Score: 109 bits (273), Expect = 1.750e-27
Identity = 56/99 (56.57%), Postives = 76/99 (76.77%), Query Frame = 1 
Query:    1 LSRSCWQRKRGEGFSMVIGVDEAGRGPFAGPVVAAACHIPADVIIQGVQDSKKVAQHRDREALFKELTGEPGVVWATAEVGSRRIDEINILEATKEAMT 297
            L+R+   R + +G++ VIGVDEAGRGP AGPVVAAACH+P DV I+GV DSKK+++ + REALF+ LT  P + +A     ++RIDEINIL+A+ E+MT
Sbjct:   36 LARTFETRYQAKGYTTVIGVDEAGRGPLAGPVVAAACHVPLDVTIEGVDDSKKISEPQ-REALFELLTNHPSITYAVHVNSAQRIDEINILQASLESMT 133
[Close]
BLAST of mRNA_H-elongata_contig170763.4374.1 vs. uniprot
Match: A0A662Y097_9STRA (Ribonuclease n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y097_9STRA)

HSP 1 Score: 107 bits (267), Expect = 2.290e-26
Identity = 59/100 (59.00%), Postives = 77/100 (77.00%), Query Frame = 1 
Query:    1 LSRSCWQRKRGEG-FSMVIGVDEAGRGPFAGPVVAAACHIPADVIIQGVQDSKKVAQHRDREALFKELTGEPGVVWATAEVGSRRIDEINILEATKEAMT 297
            LSR+   ++   G +++VIGVDEAGRGP AGPVVAAACH+PADV + GVQDSKK+++ + REALF +LT +  V +A     ++RIDEINIL+AT EAMT
Sbjct:   53 LSRAFETQRAAAGDYAVVIGVDEAGRGPLAGPVVAAACHVPADVALVGVQDSKKLSEPQ-REALFAQLTSDARVTFAVHVSSAQRIDEINILQATLEAMT 151
[Close]
BLAST of mRNA_H-elongata_contig170763.4374.1 vs. uniprot
Match: A0A5D6XRI3_9STRA (Ribonuclease n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XRI3_9STRA)

HSP 1 Score: 105 bits (263), Expect = 2.930e-26
Identity = 54/98 (55.10%), Postives = 72/98 (73.47%), Query Frame = 1 
Query:    1 LSRSCWQRKRGEGFSMVIGVDEAGRGPFAGPVVAAACHIPADVIIQGVQDSKKVAQHRDREALFKELTGEPGVVWATAEVGSRRIDEINILEATKEAM 294
            + R     K  +GF  V+GVDEAGRGP AGPVVAAACH+P DV+++GV DSKK+ + + REAL+++LT  P V WA     ++RIDEINIL+A+ E+M
Sbjct:    5 MQRHFEAAKIAKGFKYVVGVDEAGRGPLAGPVVAAACHVPLDVLLEGVHDSKKLNEAQ-REALYEQLTTHPRVQWAVHVNSAQRIDEINILQASLESM 101
[Close]
BLAST of mRNA_H-elongata_contig170763.4374.1 vs. uniprot
Match: A0A225WDA0_9STRA (Ribonuclease n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WDA0_9STRA)

HSP 1 Score: 106 bits (265), Expect = 4.530e-26
Identity = 56/99 (56.57%), Postives = 73/99 (73.74%), Query Frame = 1 
Query:    1 LSRSCWQRKRGEGFSMVIGVDEAGRGPFAGPVVAAACHIPADVIIQGVQDSKKVAQHRDREALFKELTGEPGVVWATAEVGSRRIDEINILEATKEAMT 297
            LSR    R   +G++ VIGVDEAGRGP AGPVVAAACH+P DV I+GV DSKK+++ + RE LF+ LT  P + +A     ++RIDEINIL+A+ E+MT
Sbjct:   63 LSRVFETRYEAKGYTTVIGVDEAGRGPLAGPVVAAACHVPLDVTIEGVDDSKKISEPQ-REELFELLTNHPKITYAVHVNSAQRIDEINILQASLESMT 160
[Close]
BLAST of mRNA_H-elongata_contig170763.4374.1 vs. uniprot
Match: A0A3M6VSI4_9STRA (Ribonuclease n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VSI4_9STRA)

HSP 1 Score: 105 bits (262), Expect = 1.330e-25
Identity = 55/99 (55.56%), Postives = 71/99 (71.72%), Query Frame = 1 
Query:    1 LSRSCWQRKRGEGFSMVIGVDEAGRGPFAGPVVAAACHIPADVIIQGVQDSKKVAQHRDREALFKELTGEPGVVWATAEVGSRRIDEINILEATKEAMT 297
            LSR+   R   +G++ VIGVDEAGRGP AGPVVA ACH+P +V I+G+ DSKK+ + + RE LF  LT  P V +A     ++RIDEINIL+AT E+MT
Sbjct:   66 LSRAFETRYEAKGYTTVIGVDEAGRGPLAGPVVAVACHVPTNVTIEGIDDSKKILEPQ-REKLFDLLTNHPSVTYAVHVNSAQRIDEINILQATLESMT 163
[Close]
BLAST of mRNA_H-elongata_contig170763.4374.1 vs. uniprot
Match: W2QYI7_PHYPN (Ribonuclease n=12 Tax=Phytophthora TaxID=4783 RepID=W2QYI7_PHYPN)

HSP 1 Score: 105 bits (261), Expect = 1.840e-25
Identity = 56/99 (56.57%), Postives = 71/99 (71.72%), Query Frame = 1 
Query:    1 LSRSCWQRKRGEGFSMVIGVDEAGRGPFAGPVVAAACHIPADVIIQGVQDSKKVAQHRDREALFKELTGEPGVVWATAEVGSRRIDEINILEATKEAMT 297
            LSR    R   +G++ VIGVDEAGRGP  GPVVAAACH+P DV I GV DSKK+ + + REALF+ LT  P + +A     ++RIDEINIL+A+ E+MT
Sbjct:   63 LSRIFETRYEAKGYTTVIGVDEAGRGPLVGPVVAAACHVPLDVTIPGVDDSKKILEPQ-REALFELLTTHPSITYAVHVNSAQRIDEINILQASLESMT 160
[Close]
BLAST of mRNA_H-elongata_contig170763.4374.1 vs. uniprot
Match: H3G7Z9_PHYRM (Ribonuclease n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G7Z9_PHYRM)

HSP 1 Score: 102 bits (253), Expect = 4.790e-25
Identity = 52/91 (57.14%), Postives = 68/91 (74.73%), Query Frame = 1 
Query:   22 RKRGEGFSMVIGVDEAGRGPFAGPVVAAACHIPADVIIQGVQDSKKVAQHRDREALFKELTGEPGVVWATAEVGSRRIDEINILEATKEAM 294
            R   +G++ VIGVDEAGRGP AGPVVAAACH+P DV + GV DSKK+ + + REALF+ LT  P + +A     ++RIDEINIL+A+ E+M
Sbjct:    4 RCEAKGYTTVIGVDEAGRGPLAGPVVAAACHVPLDVTLDGVDDSKKILEPQ-REALFELLTNHPSITYAVHVNSAQRIDEINILQASLESM 93
[Close]
BLAST of mRNA_H-elongata_contig170763.4374.1 vs. uniprot
Match: A0A6G0X055_9STRA (Ribonuclease n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X055_9STRA)

HSP 1 Score: 103 bits (257), Expect = 5.080e-25
Identity = 56/98 (57.14%), Postives = 72/98 (73.47%), Query Frame = 1 
Query:    1 LSRSCWQRKRGEGFSMVIGVDEAGRGPFAGPVVAAACHIPADVIIQGVQDSKKVAQHRDREALFKELTGEPGVVWATAEVGSRRIDEINILEATKEAM 294
            LSR   QR   +GF+ V+GVDEAGRGP AGPVVAAAC IP DV I+G+ DSK++ + + REALF++LT   G+ +A      +RIDEINIL+AT E+M
Sbjct:   66 LSRDIEQRIYDKGFTRVVGVDEAGRGPLAGPVVAAACFIPLDVTIEGIYDSKQLNEAQ-REALFEQLTTHKGIQYAVHVNSPQRIDEINILQATMESM 162
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig170763.4374.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJW9_9PHAE2.350e-4175.76Ribonuclease n=2 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
A0A0P1ACX4_PLAHL4.510e-3061.62Ribonuclease n=1 Tax=Plasmopara halstedii TaxID=47... [more]
G4Z1P2_PHYSP1.750e-2756.57Ribonuclease n=4 Tax=Phytophthora TaxID=4783 RepID... [more]
A0A662Y097_9STRA2.290e-2659.00Ribonuclease n=2 Tax=Nothophytophthora sp. Chile5 ... [more]
A0A5D6XRI3_9STRA2.930e-2655.10Ribonuclease n=1 Tax=Pythium brassicum TaxID=14850... [more]
A0A225WDA0_9STRA4.530e-2656.57Ribonuclease n=1 Tax=Phytophthora megakarya TaxID=... [more]
A0A3M6VSI4_9STRA1.330e-2555.56Ribonuclease n=2 Tax=Peronospora effusa TaxID=5428... [more]
W2QYI7_PHYPN1.840e-2556.57Ribonuclease n=12 Tax=Phytophthora TaxID=4783 RepI... [more]
H3G7Z9_PHYRM4.790e-2557.14Ribonuclease n=1 Tax=Phytophthora ramorum TaxID=16... [more]
A0A6G0X055_9STRA5.080e-2557.14Ribonuclease n=1 Tax=Aphanomyces euteiches TaxID=1... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig170763contigH-elongata_contig170763:424..1280 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score149.4
Seed ortholog evalue8.6e-34
Seed eggNOG ortholog2880.D7FM98
KEGG koko:K03470,ko:K10743
KEGG Pathwayko03030,map03030
GOsGO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006281,GO:0006298,GO:0006401,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019439,GO:0022616,GO:0032299,GO:0032991,GO:0033554,GO:0033567,GO:0034641,GO:0034645,GO:0034655,GO:0043137,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0046483,GO:0046700,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1901576
EggNOG free text desc.RNA-DNA hybrid ribonuclease activity
EggNOG OGsCOG0164@1,KOG2299@2759
EC3.1.26.4
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032
Hectar predicted targeting categoryother localisation
Exons3
Model size297
Cds size297
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig170763.4374.1prot_H-elongata_contig170763.4374.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig170763 424..1280 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929994.7736406-CDS-H-elongata_contig170763:423..5611622929994.7736406-CDS-H-elongata_contig170763:423..561Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170763 424..561 -
1691679238.852261-CDS-H-elongata_contig170763:423..5611691679238.852261-CDS-H-elongata_contig170763:423..561Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170763 424..561 -
1622929994.7931414-CDS-H-elongata_contig170763:745..8161622929994.7931414-CDS-H-elongata_contig170763:745..816Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170763 746..816 -
1691679238.8727381-CDS-H-elongata_contig170763:745..8161691679238.8727381-CDS-H-elongata_contig170763:745..816Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170763 746..816 -
1622929994.8127265-CDS-H-elongata_contig170763:1192..12801622929994.8127265-CDS-H-elongata_contig170763:1192..1280Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170763 1193..1280 -
1691679238.8901758-CDS-H-elongata_contig170763:1192..12801691679238.8901758-CDS-H-elongata_contig170763:1192..1280Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig170763 1193..1280 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig170763.4374.1

>prot_H-elongata_contig170763.4374.1 ID=prot_H-elongata_contig170763.4374.1|Name=mRNA_H-elongata_contig170763.4374.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp
LSRSCWQRKRGEGFSMVIGVDEAGRGPFAGPVVAAACHIPADVIIQGVQD
SKKVAQHRDREALFKELTGEPGVVWATAEVGSRRIDEINILEATKEAMT
back to top

mRNA from alignment at H-elongata_contig170763:424..1280-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig170763.4374.1 ID=mRNA_H-elongata_contig170763.4374.1|Name=mRNA_H-elongata_contig170763.4374.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=857bp|location=Sequence derived from alignment at H-elongata_contig170763:424..1280- (Himanthalia elongata Himel1 dioecious)
CTCTCACGCTCGTGTTGGCAGCGCAAGCGCGGCGAAGGTTTTTCGATGGT
GATAGGCGTGGACGAGGCGGGGCGAGGCCCCTTTGCGGGTCAGTGCAGCG
AAACGGGTACCTCGTAGAGTAGTAGGCAGGGCTTAAAAAATCCCTGGGGT
AAACTTGACCCTCGAATCGATCTCTGTGTGTATGTGTGTGTGTGTAATAC
TAGTAGTGCAAGGTGCTAGTCAAAGCTCTGGTACATGGCAGTAGTAAGCG
TGAGCAAGCGCATGGTGTTACCCTCCGCCTCCACCTTACGTCTTGGAGAT
CATGATCGCTAGAATGGAATGGAAGATCGTTACCATTGCTCTTGATCGTG
CCCACACCTCTACAACTATAGCGGTTACTGCAAGCCCTCCCCCCCCCTAC
CTCTTCGCTTTCTGAGCGCCTTATTCGTCGACCGATGTCGACGGCTTGCG
TCATCTCTCTGAAGGACCCGTCGTGGCCGCGGCGTGCCATATTCCTGCTG
ACGTCATCATCCAAGGTGTTCAAGACAGCAAAAAGGTGAACCAATAATCG
ACGAATCGTCGAATGTATGGTTTCGCTCATGCGGCTTGCCCTCGTAGCTT
GTGAAATCTCGGCTGAAATTTTCAGCCGCACCTCGATGGACGCCGGACGA
TGATTTTACAGCCTTGTAGAATCCAACCGTAACGATATCAACGGACCTTT
CCGGCGGCCTGTTCGGCAGGTGGCGCAGCATCGCGATCGCGAGGCGCTCT
TCAAGGAACTGACGGGAGAACCGGGCGTTGTTTGGGCCACGGCAGAGGTC
GGAAGTCGCCGCATTGACGAGATCAACATCCTCGAGGCCACCAAGGAGGC
AATGACG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig170763:424..1280-

>mRNA_H-elongata_contig170763.4374.1 ID=mRNA_H-elongata_contig170763.4374.1|Name=mRNA_H-elongata_contig170763.4374.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig170763:424..1280- (Himanthalia elongata Himel1 dioecious)
CTCTCACGCTCGTGTTGGCAGCGCAAGCGCGGCGAAGGTTTTTCGATGGT
GATAGGCGTGGACGAGGCGGGGCGAGGCCCCTTTGCGGCTCTCACGCTCG
TGTTGGCAGCGCAAGCGCGGCGAAGGTTTTTCGATGGTGATAGGCGTGGA
CGAGGCGGGGCGAGGCCCCTTTGCGGGACCCGTCGTGGCCGCGGCGTGCC
ATATTCCTGCTGACGTCATCATCCAAGGTGTTCAAGACAGCAAAAAGGAC
CCGTCGTGGCCGCGGCGTGCCATATTCCTGCTGACGTCATCATCCAAGGT
GTTCAAGACAGCAAAAAGGTGGCGCAGCATCGCGATCGCGAGGCGCTCTT
CAAGGAACTGACGGGAGAACCGGGCGTTGTTTGGGCCACGGCAGAGGTCG
GAAGTCGCCGCATTGACGAGATCAACATCCTCGAGGCCACCAAGGAGGCA
ATGACGGTGGCGCAGCATCGCGATCGCGAGGCGCTCTTCAAGGAACTGAC
GGGAGAACCGGGCGTTGTTTGGGCCACGGCAGAGGTCGGAAGTCGCCGCA
TTGACGAGATCAACATCCTCGAGGCCACCAAGGAGGCAATGACG
back to top