prot_H-elongata_contig170763.4374.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig170763.4374.1
Unique Name	prot_H-elongata_contig170763.4374.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	99

Homology

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BLAST of mRNA_H-elongata_contig170763.4374.1 vs. uniprot
Match: A0A6H5JJW9_9PHAE (Ribonuclease n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJW9_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 2.350e-41
Identity = 75/99 (75.76%), Postives = 81/99 (81.82%), Query Frame = 0

Query:    1 LSRSCWQRKRGEGFSMVIGVDEAGRGPFAGPVVAAACHIPADVIIQGVQDSKKVAQHRDREALFKELTGEPGVVWATAEVGSRRIDEINILEATKEAMT 99
            L R+   RK  EGF  VIG+DEAGRGPFAGPVVAAAC IP DV I G+QDSKK+ QH DRE LFKELT  PGV+WAT+EVGS RIDEINILEATKEAMT
Sbjct:  114 LGRTRENRKLAEGFDAVIGLDEAGRGPFAGPVVAAACMIPPDVNILGIQDSKKITQHSDRETLFKELTETPGVIWATSEVGSSRIDEINILEATKEAMT 212

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BLAST of mRNA_H-elongata_contig170763.4374.1 vs. uniprot
Match: A0A0P1ACX4_PLAHL (Ribonuclease n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ACX4_PLAHL)

HSP 1 Score: 116 bits (291), Expect = 4.510e-30
Identity = 61/99 (61.62%), Postives = 75/99 (75.76%), Query Frame = 0

Query:    1 LSRSCWQRKRGEGFSMVIGVDEAGRGPFAGPVVAAACHIPADVIIQGVQDSKKVAQHRDREALFKELTGEPGVVWATAEVGSRRIDEINILEATKEAMT 99
            LSR    R + +G+S VIGVDEAGRGP AGPVVAAACH+P DV+I+GV DSKK+ Q R REALF+ LT  P + +A     ++RIDEINIL+A+ EAMT
Sbjct:   54 LSRQFETRYKAKGYSTVIGVDEAGRGPLAGPVVAAACHVPLDVVIEGVDDSKKILQER-REALFELLTTHPSITYAVHVNSAQRIDEINILQASLEAMT 151

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BLAST of mRNA_H-elongata_contig170763.4374.1 vs. uniprot
Match: G4Z1P2_PHYSP (Ribonuclease n=4 Tax=Phytophthora TaxID=4783 RepID=G4Z1P2_PHYSP)

HSP 1 Score: 109 bits (273), Expect = 1.750e-27
Identity = 56/99 (56.57%), Postives = 76/99 (76.77%), Query Frame = 0

Query:    1 LSRSCWQRKRGEGFSMVIGVDEAGRGPFAGPVVAAACHIPADVIIQGVQDSKKVAQHRDREALFKELTGEPGVVWATAEVGSRRIDEINILEATKEAMT 99
            L+R+   R + +G++ VIGVDEAGRGP AGPVVAAACH+P DV I+GV DSKK+++ + REALF+ LT  P + +A     ++RIDEINIL+A+ E+MT
Sbjct:   36 LARTFETRYQAKGYTTVIGVDEAGRGPLAGPVVAAACHVPLDVTIEGVDDSKKISEPQ-REALFELLTNHPSITYAVHVNSAQRIDEINILQASLESMT 133

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BLAST of mRNA_H-elongata_contig170763.4374.1 vs. uniprot
Match: A0A662Y097_9STRA (Ribonuclease n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y097_9STRA)

HSP 1 Score: 107 bits (267), Expect = 2.290e-26
Identity = 59/100 (59.00%), Postives = 77/100 (77.00%), Query Frame = 0

Query:    1 LSRSCWQRKRGEG-FSMVIGVDEAGRGPFAGPVVAAACHIPADVIIQGVQDSKKVAQHRDREALFKELTGEPGVVWATAEVGSRRIDEINILEATKEAMT 99
            LSR+   ++   G +++VIGVDEAGRGP AGPVVAAACH+PADV + GVQDSKK+++ + REALF +LT +  V +A     ++RIDEINIL+AT EAMT
Sbjct:   53 LSRAFETQRAAAGDYAVVIGVDEAGRGPLAGPVVAAACHVPADVALVGVQDSKKLSEPQ-REALFAQLTSDARVTFAVHVSSAQRIDEINILQATLEAMT 151

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BLAST of mRNA_H-elongata_contig170763.4374.1 vs. uniprot
Match: A0A5D6XRI3_9STRA (Ribonuclease n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XRI3_9STRA)

HSP 1 Score: 105 bits (263), Expect = 2.930e-26
Identity = 54/98 (55.10%), Postives = 72/98 (73.47%), Query Frame = 0

Query:    1 LSRSCWQRKRGEGFSMVIGVDEAGRGPFAGPVVAAACHIPADVIIQGVQDSKKVAQHRDREALFKELTGEPGVVWATAEVGSRRIDEINILEATKEAM 98
            + R     K  +GF  V+GVDEAGRGP AGPVVAAACH+P DV+++GV DSKK+ + + REAL+++LT  P V WA     ++RIDEINIL+A+ E+M
Sbjct:    5 MQRHFEAAKIAKGFKYVVGVDEAGRGPLAGPVVAAACHVPLDVLLEGVHDSKKLNEAQ-REALYEQLTTHPRVQWAVHVNSAQRIDEINILQASLESM 101

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BLAST of mRNA_H-elongata_contig170763.4374.1 vs. uniprot
Match: A0A225WDA0_9STRA (Ribonuclease n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WDA0_9STRA)

HSP 1 Score: 106 bits (265), Expect = 4.530e-26
Identity = 56/99 (56.57%), Postives = 73/99 (73.74%), Query Frame = 0

Query:    1 LSRSCWQRKRGEGFSMVIGVDEAGRGPFAGPVVAAACHIPADVIIQGVQDSKKVAQHRDREALFKELTGEPGVVWATAEVGSRRIDEINILEATKEAMT 99
            LSR    R   +G++ VIGVDEAGRGP AGPVVAAACH+P DV I+GV DSKK+++ + RE LF+ LT  P + +A     ++RIDEINIL+A+ E+MT
Sbjct:   63 LSRVFETRYEAKGYTTVIGVDEAGRGPLAGPVVAAACHVPLDVTIEGVDDSKKISEPQ-REELFELLTNHPKITYAVHVNSAQRIDEINILQASLESMT 160

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BLAST of mRNA_H-elongata_contig170763.4374.1 vs. uniprot
Match: A0A3M6VSI4_9STRA (Ribonuclease n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VSI4_9STRA)

HSP 1 Score: 105 bits (262), Expect = 1.330e-25
Identity = 55/99 (55.56%), Postives = 71/99 (71.72%), Query Frame = 0

Query:    1 LSRSCWQRKRGEGFSMVIGVDEAGRGPFAGPVVAAACHIPADVIIQGVQDSKKVAQHRDREALFKELTGEPGVVWATAEVGSRRIDEINILEATKEAMT 99
            LSR+   R   +G++ VIGVDEAGRGP AGPVVA ACH+P +V I+G+ DSKK+ + + RE LF  LT  P V +A     ++RIDEINIL+AT E+MT
Sbjct:   66 LSRAFETRYEAKGYTTVIGVDEAGRGPLAGPVVAVACHVPTNVTIEGIDDSKKILEPQ-REKLFDLLTNHPSVTYAVHVNSAQRIDEINILQATLESMT 163

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BLAST of mRNA_H-elongata_contig170763.4374.1 vs. uniprot
Match: W2QYI7_PHYPN (Ribonuclease n=12 Tax=Phytophthora TaxID=4783 RepID=W2QYI7_PHYPN)

HSP 1 Score: 105 bits (261), Expect = 1.840e-25
Identity = 56/99 (56.57%), Postives = 71/99 (71.72%), Query Frame = 0

Query:    1 LSRSCWQRKRGEGFSMVIGVDEAGRGPFAGPVVAAACHIPADVIIQGVQDSKKVAQHRDREALFKELTGEPGVVWATAEVGSRRIDEINILEATKEAMT 99
            LSR    R   +G++ VIGVDEAGRGP  GPVVAAACH+P DV I GV DSKK+ + + REALF+ LT  P + +A     ++RIDEINIL+A+ E+MT
Sbjct:   63 LSRIFETRYEAKGYTTVIGVDEAGRGPLVGPVVAAACHVPLDVTIPGVDDSKKILEPQ-REALFELLTTHPSITYAVHVNSAQRIDEINILQASLESMT 160

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BLAST of mRNA_H-elongata_contig170763.4374.1 vs. uniprot
Match: H3G7Z9_PHYRM (Ribonuclease n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G7Z9_PHYRM)

HSP 1 Score: 102 bits (253), Expect = 4.790e-25
Identity = 52/91 (57.14%), Postives = 68/91 (74.73%), Query Frame = 0

Query:    8 RKRGEGFSMVIGVDEAGRGPFAGPVVAAACHIPADVIIQGVQDSKKVAQHRDREALFKELTGEPGVVWATAEVGSRRIDEINILEATKEAM 98
            R   +G++ VIGVDEAGRGP AGPVVAAACH+P DV + GV DSKK+ + + REALF+ LT  P + +A     ++RIDEINIL+A+ E+M
Sbjct:    4 RCEAKGYTTVIGVDEAGRGPLAGPVVAAACHVPLDVTLDGVDDSKKILEPQ-REALFELLTNHPSITYAVHVNSAQRIDEINILQASLESM 93

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BLAST of mRNA_H-elongata_contig170763.4374.1 vs. uniprot
Match: A0A6G0X055_9STRA (Ribonuclease n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X055_9STRA)

HSP 1 Score: 103 bits (257), Expect = 5.080e-25
Identity = 56/98 (57.14%), Postives = 72/98 (73.47%), Query Frame = 0

Query:    1 LSRSCWQRKRGEGFSMVIGVDEAGRGPFAGPVVAAACHIPADVIIQGVQDSKKVAQHRDREALFKELTGEPGVVWATAEVGSRRIDEINILEATKEAM 98
            LSR   QR   +GF+ V+GVDEAGRGP AGPVVAAAC IP DV I+G+ DSK++ + + REALF++LT   G+ +A      +RIDEINIL+AT E+M
Sbjct:   66 LSRDIEQRIYDKGFTRVVGVDEAGRGPLAGPVVAAACFIPLDVTIEGIYDSKQLNEAQ-REALFEQLTTHKGIQYAVHVNSPQRIDEINILQATMESM 162

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig170763.4374.1 vs. uniprot

BLAST of mRNA_H-elongata_contig170763.4374.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JJW9_9PHAE	2.350e-41	75.76	Ribonuclease n=2 Tax=Ectocarpus TaxID=2879 RepID=A...	[more]
A0A0P1ACX4_PLAHL	4.510e-30	61.62	Ribonuclease n=1 Tax=Plasmopara halstedii TaxID=47...	[more]
G4Z1P2_PHYSP	1.750e-27	56.57	Ribonuclease n=4 Tax=Phytophthora TaxID=4783 RepID...	[more]
A0A662Y097_9STRA	2.290e-26	59.00	Ribonuclease n=2 Tax=Nothophytophthora sp. Chile5 ...	[more]
A0A5D6XRI3_9STRA	2.930e-26	55.10	Ribonuclease n=1 Tax=Pythium brassicum TaxID=14850...	[more]
A0A225WDA0_9STRA	4.530e-26	56.57	Ribonuclease n=1 Tax=Phytophthora megakarya TaxID=...	[more]
A0A3M6VSI4_9STRA	1.330e-25	55.56	Ribonuclease n=2 Tax=Peronospora effusa TaxID=5428...	[more]
W2QYI7_PHYPN	1.840e-25	56.57	Ribonuclease n=12 Tax=Phytophthora TaxID=4783 RepI...	[more]
H3G7Z9_PHYRM	4.790e-25	57.14	Ribonuclease n=1 Tax=Phytophthora ramorum TaxID=16...	[more]
A0A6G0X055_9STRA	5.080e-25	57.14	Ribonuclease n=1 Tax=Aphanomyces euteiches TaxID=1...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024567	Ribonuclease HII/HIII domain	PFAM	PF01351	RNase_HII	coord: 18..96 e-value: 1.5E-12 score: 47.8
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 2..99 e-value: 1.4E-25 score: 92.1
IPR022898	Ribonuclease HII	PANTHER	PTHR10954:SF18	RIBONUCLEASE HII	coord: 11..98
IPR001352	Ribonuclease HII/HIII	PANTHER	PTHR10954	RIBONUCLEASE H2 SUBUNIT A	coord: 11..98
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 12..98

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig170763	contig	H-elongata_contig170763:424..1280 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig170763.4374.1	mRNA_H-elongata_contig170763.4374.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig170763 424..1280 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig170763.4374.1 ID=prot_H-elongata_contig170763.4374.1|Name=mRNA_H-elongata_contig170763.4374.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp
LSRSCWQRKRGEGFSMVIGVDEAGRGPFAGPVVAAACHIPADVIIQGVQD
SKKVAQHRDREALFKELTGEPGVVWATAEVGSRRIDEINILEATKEAMT

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR024567	RNase_HII/HIII_dom
IPR036397	RNaseH_sf
IPR022898	RNase_HII
IPR001352	RNase_HII/HIII
IPR012337	RNaseH-like_sf